BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0040.p (539 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65J12.1 Q65J12_BACLD Sugar kinase, possible xylulose kinase 872 0.0 Q8EMP2.1 Q8EMP2_OCEIH Hypothetical conserved protein 793 0.0 A8FFH8.1 A8FFH8_BACP2 Xylulokinase EC=2.7.1.17 723 0.0 B4ALH8.1 B4ALH8_BACPU Xylulokinase 719 0.0 B0G4U1.1 B0G4U1_9FIRM Putative uncharacterized protein 718 0.0 >Q65J12.1 Q65J12_BACLD Sugar kinase, possible xylulose kinase Length = 535 Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/529 (78%), Positives = 461/529 (87%) Query: 6 NIKQAILKGETSLGIEFGSTRIKAVLIDYRFETIASGSYEWENLLVDGYWTYHLADIIKG 65 NIKQAI +GETSLGIEFGSTRIKAVLID FETIASGSYEWENLL DG+WTY+L DII G Sbjct: 7 NIKQAITEGETSLGIEFGSTRIKAVLIDSSFETIASGSYEWENLLEDGFWTYNLVDIITG 66 Query: 66 LQTAYSEMKLEVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRNATTGAAA 125 L+TAYSEMK EVE+ YG+T+ GSIG SAMMHGYMAFD GELLVPFRTWRN+TTGAAA Sbjct: 67 LRTAYSEMKNEVERNYGITIRKIGSIGISAMMHGYMAFDKTGELLVPFRTWRNSTTGAAA 126 Query: 126 KELSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGYIHWLLTGSKAIGIGDAS 185 KEL+D F+FNIPERWSIAHLYQAILN E+H+P +ITTLAGYIHWLLTG+KAIGIGDAS Sbjct: 127 KELTDQFQFNIPERWSIAHLYQAILNEEKHLPRIDYITTLAGYIHWLLTGNKAIGIGDAS 186 Query: 186 GMFPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHAGEQAGVLTEAGVKILDA 245 GMFPIDE+ Q+YN M+KQFDELI+ KGYPWKL+D+LPKV +GEQAG LTE G KILD Sbjct: 187 GMFPIDESTQNYNESMVKQFDELISNKGYPWKLKDILPKVYISGEQAGELTEIGAKILDQ 246 Query: 246 SGDLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEQDLSAVYPEIDMV 305 S +LQPGIP+CPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLE++LS VYPEID+V Sbjct: 247 SKNLQPGIPICPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEKELSKVYPEIDLV 306 Query: 306 TTPDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQLFSVMFKKALEAXXXXXX 365 TTP+GSPVGMVHANNCSSDINAWLGLFREF+EAMGQK + N+LF VM KALEA Sbjct: 307 TTPNGSPVGMVHANNCSSDINAWLGLFREFFEAMGQKIETNKLFEVMLNKALEADSDGGG 366 Query: 366 XXXXXXFSGENITGMEKGRPLFVRSPESRFNLANFMRTHLYSAFAALKIGMDILTKKENV 425 FSGENITG+EKGRPLFVRSPESRFNLANFMRTHL++AFAALKIGMDILTK+E + Sbjct: 367 LLSYGYFSGENITGLEKGRPLFVRSPESRFNLANFMRTHLFTAFAALKIGMDILTKEEKI 426 Query: 426 AIDSILAHGGLFKTPIVGQKMLAAALNVPVSVMATAGEGGAWGMAILAAYMSTKGQQEPL 485 IDSILAHGGLFKTP+VGQK++AAA+N PVSVM TAGEGGAWGMAILA+YM KGQ+E L Sbjct: 427 EIDSILAHGGLFKTPLVGQKIVAAAMNTPVSVMETAGEGGAWGMAILASYMMNKGQEESL 486 Query: 486 DDFLADKVFKAAEGHEIHPDSADVAGFELFMERYSNGLAIEQAAVDHLV 534 +DFL KVF+ G EI+PD DV GFE F+ERY GL IEQAAVDHL+ Sbjct: 487 EDFLDKKVFEEDAGQEIYPDQLDVEGFEAFIERYKKGLMIEQAAVDHLI 535 >Q8EMP2.1 Q8EMP2_OCEIH Hypothetical conserved protein Length = 539 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/536 (69%), Positives = 442/536 (82%), Gaps = 3/536 (0%) Query: 3 MDQN---IKQAILKGETSLGIEFGSTRIKAVLIDYRFETIASGSYEWENLLVDGYWTYHL 59 M++N IK+ I GETSLGIEFGSTRIKA+LID F TIASGS+EWEN L +G+WTY+L Sbjct: 1 MEKNQAHIKEWIANGETSLGIEFGSTRIKAILIDNSFHTIASGSFEWENELENGFWTYNL 60 Query: 60 ADIIKGLQTAYSEMKLEVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRNA 119 DI+ GLQTAYSEMK VE++YG+T+ T GS+G SAMMHGYMAFD GELLVPFRTWRNA Sbjct: 61 VDIVTGLQTAYSEMKQNVEREYGITIRTIGSVGVSAMMHGYMAFDKTGELLVPFRTWRNA 120 Query: 120 TTGAAAKELSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGYIHWLLTGSKAI 179 +T AAKEL+D F+FNIPERWSIAHLYQAILN E+H+P ITTL+G+IHWLLTG K I Sbjct: 121 STTTAAKELTDLFQFNIPERWSIAHLYQAILNEEKHLPRIDVITTLSGFIHWLLTGEKVI 180 Query: 180 GIGDASGMFPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHAGEQAGVLTEAG 239 GIGDASG+FPID++ +DYN MIK+F++ I +K YPW++ D+LP + GE+AG LT+ G Sbjct: 181 GIGDASGVFPIDKSTKDYNQSMIKRFNKTIESKQYPWEVEDILPNILVGGEEAGRLTQVG 240 Query: 240 VKILDASGDLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEQDLSAVY 299 +I+D S +LQPGIP CPPEGDAGTGMVATNS+RKRTGN+SVGTSVFAMIVL+ +L+ VY Sbjct: 241 AEIIDRSKNLQPGIPFCPPEGDAGTGMVATNSIRKRTGNVSVGTSVFAMIVLDNELTDVY 300 Query: 300 PEIDMVTTPDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQLFSVMFKKALEA 359 PEIDMVTTP GSPV MVHANNCSSD+NAW+GLFREFYEAMGQ D +Q+F VM KK+++A Sbjct: 301 PEIDMVTTPSGSPVAMVHANNCSSDLNAWIGLFREFYEAMGQTVDTDQIFEVMLKKSMKA 360 Query: 360 XXXXXXXXXXXXFSGENITGMEKGRPLFVRSPESRFNLANFMRTHLYSAFAALKIGMDIL 419 SGENITG+EKGRPLFVRSPES FNLANFMRTHL++AF ALKIGMDIL Sbjct: 361 DPDGGGLLSYGYLSGENITGIEKGRPLFVRSPESNFNLANFMRTHLFTAFGALKIGMDIL 420 Query: 420 TKKENVAIDSILAHGGLFKTPIVGQKMLAAALNVPVSVMATAGEGGAWGMAILAAYMSTK 479 TK+E V IDSILAHGGLFKTP+ GQK+++AA+NVPVSVM TAG+GGAWG+AILA+YM + Sbjct: 421 TKEEKVTIDSILAHGGLFKTPLAGQKIVSAAMNVPVSVMDTAGDGGAWGVAILASYMRNR 480 Query: 480 GQQEPLDDFLADKVFKAAEGHEIHPDSADVAGFELFMERYSNGLAIEQAAVDHLVE 535 + E L+DFL KVF++A EI+PD DV GFE FMERY GLAIE AA +H +E Sbjct: 481 ERNESLEDFLDTKVFESASAKEIYPDGLDVEGFEKFMERYKEGLAIEGAAAEHFIE 536 >A8FFH8.1 A8FFH8_BACP2 Xylulokinase EC=2.7.1.17 Length = 541 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/530 (65%), Positives = 421/530 (79%), Gaps = 1/530 (0%) Query: 5 QNIKQAILKGETSLGIEFGSTRIKAVLIDYRFETIASGSYEWENLLVDGYWTYHLADIIK 64 + +A+ +G TSLGIEFGSTRIKA+LID F+ IA G++EWE+ L +G WTY+L DII Sbjct: 4 EETTKALKEGRTSLGIEFGSTRIKAILIDEAFQPIAQGAFEWESSLQEGIWTYNLIDIIT 63 Query: 65 GLQTAYSEMKLEVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRNATTGAA 124 GLQ AY EMK +VEQ+Y VT+ T GSIG SAMMHGY+A D GE+LVPFRTWRNATT A Sbjct: 64 GLQVAYREMKEQVEQRYDVTIQTIGSIGVSAMMHGYVACDHTGEVLVPFRTWRNATTIEA 123 Query: 125 AKELSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGYIHWLLTGSKAIGIGDA 184 +++L+D F+F+IPERWSIAHLYQAIL E+H+ ++TTL+GYIHWLLTG +AIGIGDA Sbjct: 124 SQKLTDVFQFHIPERWSIAHLYQAILEEEKHLSRLEYMTTLSGYIHWLLTGKQAIGIGDA 183 Query: 185 SGMFPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHAGEQAGVLTEAGVKILD 244 SGMFPIDE +DYN M+ QF++LIA KGYPWKLR LLP+V AGE+AGVLT AG ILD Sbjct: 184 SGMFPIDEQTKDYNEEMLHQFEDLIAEKGYPWKLRHLLPRVYLAGEEAGVLTAAGAAILD 243 Query: 245 ASGDLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEQDLSAVYPEIDM 304 LQPGIP CPPEGDAGTGMVATNSV KRTGNISVGTSVFAMIVLEQ+L VYPE+DM Sbjct: 244 QGKHLQPGIPFCPPEGDAGTGMVATNSVEKRTGNISVGTSVFAMIVLEQELKGVYPEVDM 303 Query: 305 VTTPDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQLFSVMFKKALEAXXXXX 364 VTTPDG PV MVHANNC+SD+NAW+ +FRE ++A+G + ++++ + ++ALEA Sbjct: 304 VTTPDGLPVAMVHANNCTSDLNAWMNIFREAFDALGVQVSSEKVYAALLQQALEADRDGG 363 Query: 365 XXXXXXXFSGENITGMEKGRPLFVRSPESRFNLANFMRTHLYSAFAALKIGMDILTKKEN 424 +SGENIT + +GRPLFVRS ESRFNLANFMRTHL+SAF A+KIGMD L ++E+ Sbjct: 364 GLLSYGYYSGENITRLPEGRPLFVRSAESRFNLANFMRTHLFSAFGAMKIGMDRLKEQEH 423 Query: 425 VAIDSILAHGGLFKTPIVGQKMLAAALNVPVSVMATAGEGGAWGMAILAAYMSTKGQQEP 484 V ID +LAHGGLFKTP+VGQKM+AAAL+ PVSV++TAGEGGA+GMA+LA+YM QQ+ Sbjct: 424 VVIDRLLAHGGLFKTPLVGQKMVAAALDTPVSVVSTAGEGGAFGMAVLASYM-VHHQQQT 482 Query: 485 LDDFLADKVFKAAEGHEIHPDSADVAGFELFMERYSNGLAIEQAAVDHLV 534 L +FL +VF I PD+ DV GF F++RY +GL IE+AAV HLV Sbjct: 483 LPEFLTHQVFADTSEELIEPDTLDVKGFGEFLKRYQDGLPIEEAAVAHLV 532 >B4ALH8.1 B4ALH8_BACPU Xylulokinase Length = 541 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/530 (64%), Positives = 419/530 (79%), Gaps = 1/530 (0%) Query: 5 QNIKQAILKGETSLGIEFGSTRIKAVLIDYRFETIASGSYEWENLLVDGYWTYHLADIIK 64 + +A+ +G TSLGIEFGSTRIKA+LID F+ IA G++EWE+ L +G WTY+L DII Sbjct: 4 EETTKALKEGRTSLGIEFGSTRIKAILIDEAFQPIAQGAFEWESSLQEGIWTYNLIDIIT 63 Query: 65 GLQTAYSEMKLEVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRNATTGAA 124 GLQ AY EMK +VEQ+YGVT+ T GSIG SAMMHGY+A D GE+LVPFRTWRNATT A Sbjct: 64 GLQVAYREMKEQVEQRYGVTIQTIGSIGVSAMMHGYVACDHTGEVLVPFRTWRNATTIEA 123 Query: 125 AKELSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGYIHWLLTGSKAIGIGDA 184 +++L+D F+F+IPERWSIAHLYQAIL E+H+ ++TTL+GYIHWLLTG +AIGIGDA Sbjct: 124 SQKLTDVFQFHIPERWSIAHLYQAILEEEKHLSRLEYMTTLSGYIHWLLTGKQAIGIGDA 183 Query: 185 SGMFPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHAGEQAGVLTEAGVKILD 244 SGMFPIDE +DYN M+ QF++LIA KGYPWKLR LLP+V AGE+AGVLT AG ILD Sbjct: 184 SGMFPIDEQTKDYNEEMLHQFEDLIAEKGYPWKLRHLLPRVYLAGEEAGVLTAAGAAILD 243 Query: 245 ASGDLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEQDLSAVYPEIDM 304 L+PGIP CPPEGDAGTGMVATNSV KRTGNISVGTSVFAMIVLEQ+L VYPE+DM Sbjct: 244 QGKHLRPGIPFCPPEGDAGTGMVATNSVEKRTGNISVGTSVFAMIVLEQELKGVYPEVDM 303 Query: 305 VTTPDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQLFSVMFKKALEAXXXXX 364 VTTPDG PV MVHANNC+SD+NAW+ +FRE ++A+G + +++ + ++ALEA Sbjct: 304 VTTPDGLPVAMVHANNCTSDLNAWMNIFREAFDALGVQVSSGKVYEALLQQALEADRDGG 363 Query: 365 XXXXXXXFSGENITGMEKGRPLFVRSPESRFNLANFMRTHLYSAFAALKIGMDILTKKEN 424 +SGENIT + +GRPLFVRS ESRFNLANFMRTHL+SAF A+KIGMD L ++E Sbjct: 364 GLLSYGYYSGENITRLPEGRPLFVRSAESRFNLANFMRTHLFSAFGAMKIGMDRLKEQEQ 423 Query: 425 VAIDSILAHGGLFKTPIVGQKMLAAALNVPVSVMATAGEGGAWGMAILAAYMSTKGQQEP 484 V ID +LAHGGLFKTP+VGQKM+AAAL+ PVSV++TAGEGGA+GMA+LA+YM Q++ Sbjct: 424 VVIDRLLAHGGLFKTPLVGQKMVAAALDTPVSVVSTAGEGGAFGMAVLASYM-VHHQKQT 482 Query: 485 LDDFLADKVFKAAEGHEIHPDSADVAGFELFMERYSNGLAIEQAAVDHLV 534 L +FL +VF I PD DV GF F++RY +GL IE+AAV HL+ Sbjct: 483 LAEFLTHQVFAHTSEELIEPDPLDVKGFGEFLKRYQDGLPIEEAAVAHLM 532 >B0G4U1.1 B0G4U1_9FIRM Putative uncharacterized protein Length = 532 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/527 (64%), Positives = 408/527 (77%) Query: 8 KQAILKGETSLGIEFGSTRIKAVLIDYRFETIASGSYEWENLLVDGYWTYHLADIIKGLQ 67 K+ I KG+T LGIEFGSTRIKAVLID IASG +EWEN L +G WTY L DI +GL+ Sbjct: 5 KELIEKGKTVLGIEFGSTRIKAVLIDENHHPIASGDHEWENRLENGIWTYSLDDIWQGLR 64 Query: 68 TAYSEMKLEVEQKYGVTLTTAGSIGFSAMMHGYMAFDDKGELLVPFRTWRNATTGAAAKE 127 +Y ++ VE+ YGV L G+IGFSAMMHGYMAFD GELLVPFRTWRN TG A++ Sbjct: 65 DSYQKLAFNVEESYGVILKKIGAIGFSAMMHGYMAFDKNGELLVPFRTWRNGITGEASEA 124 Query: 128 LSDTFKFNIPERWSIAHLYQAILNGEQHVPHARFITTLAGYIHWLLTGSKAIGIGDASGM 187 L++ F++NIP+RWSIAHLYQAILNGE HV F TTLAGYIHW LTG K +GIGDASGM Sbjct: 125 LTEAFQYNIPQRWSIAHLYQAILNGEDHVKDIEFFTTLAGYIHWKLTGQKVLGIGDASGM 184 Query: 188 FPIDEAAQDYNAPMIKQFDELIAAKGYPWKLRDLLPKVCHAGEQAGVLTEAGVKILDASG 247 FPID + Y+A MI++FD L+A K YPWKL+D+LPK+ AGE AG+LT G K+LD SG Sbjct: 185 FPIDPETKQYHAAMIQKFDLLVADKNYPWKLKDILPKILVAGENAGILTPEGAKLLDPSG 244 Query: 248 DLQPGIPLCPPEGDAGTGMVATNSVRKRTGNISVGTSVFAMIVLEQDLSAVYPEIDMVTT 307 +L+ GIPLCPPEGDAGTGM ATNSV KRTGN+S GTSVFAM+VLE++L VYPEID+VTT Sbjct: 245 NLEAGIPLCPPEGDAGTGMAATNSVAKRTGNVSAGTSVFAMVVLEKELKKVYPEIDLVTT 304 Query: 308 PDGSPVGMVHANNCSSDINAWLGLFREFYEAMGQKADPNQLFSVMFKKALEAXXXXXXXX 367 PDGS VGMVHANNC+SD+NAW+GLFREF E+ G + D NQLF ++ KALE Sbjct: 305 PDGSLVGMVHANNCTSDLNAWVGLFREFAESFGMEVDMNQLFGTLYNKALEGDKDCGGLL 364 Query: 368 XXXXFSGENITGMEKGRPLFVRSPESRFNLANFMRTHLYSAFAALKIGMDILTKKENVAI 427 SGENITG+ +GRPLFVRSPESRFNLANFMRTHLY++ ALK+GMDIL K+E V I Sbjct: 365 SYGYLSGENITGVTEGRPLFVRSPESRFNLANFMRTHLYTSLGALKVGMDILLKEEQVQI 424 Query: 428 DSILAHGGLFKTPIVGQKMLAAALNVPVSVMATAGEGGAWGMAILAAYMSTKGQQEPLDD 487 D IL HGGLFKT VGQ +LAAA++ PVSVM TAGEGG WGMA+LA+YM K E L Sbjct: 425 DKILGHGGLFKTKGVGQGILAAAIDTPVSVMETAGEGGPWGMALLASYMLNKESDETLAH 484 Query: 488 FLADKVFKAAEGHEIHPDSADVAGFELFMERYSNGLAIEQAAVDHLV 534 +L++KVF +G + PD DV GFE F+ERY G+AIE+AA+++L+ Sbjct: 485 YLSEKVFAGNKGTSMDPDPEDVKGFETFIERYKKGIAIEKAALENLI 531 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,188,576,791 Number of extensions: 135232435 Number of successful extensions: 323789 Number of sequences better than 1.0e-05: 167 Number of HSP's gapped: 323722 Number of HSP's successfully gapped: 167 Length of query: 539 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 398 Effective length of database: 1,732,333,088 Effective search space: 689468569024 Effective search space used: 689468569024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)