BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0039.p (231 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65J11.1 Q65J11_BACLD Putative uncharacterized protein 419 e-115 Q8EMP3.1 Q8EMP3_OCEIH L-ribulose-5-phosphate 4-epimerase 418 e-115 Q3Y1E4.1 Q3Y1E4_ENTFC Class II aldolase/adducin, N-terminal 393 e-108 A8FFH7.1 A8FFH7_BACP2 L-ribulose-5-phosphate 4-epimerase EC=5.1.3.4 392 e-107 C2HE21.1 C2HE21_ENTFC L-ribulose-5-phosphate 4-epimerase EC=5.1.3.4 391 e-107 >Q65J11.1 Q65J11_BACLD Putative uncharacterized protein Length = 231 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/231 (85%), Positives = 211/231 (91%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLEQLKEEV QANLDLPK+GLVKYTWGN SA+DR + LFVIKPSGV Y+ MK SDMVVVD Sbjct: 1 MLEQLKEEVLQANLDLPKYGLVKYTWGNASAIDRETGLFVIKPSGVDYETMKASDMVVVD 60 Query: 61 FDGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHADT 120 DGNVVEG+LRPSSDT THAVLYK Y EIGGIVHTHSTWAT+WAQAGLDVP MGTTHADT Sbjct: 61 LDGNVVEGELRPSSDTATHAVLYKRYPEIGGIVHTHSTWATIWAQAGLDVPAMGTTHADT 120 Query: 121 FYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDAH 180 FYGSVPC R+LTQEEIDRGYEAETG VIIETFE+RGLDI+AVPGVLL GH PFTWGKD Sbjct: 121 FYGSVPCARYLTQEEIDRGYEAETGHVIIETFEERGLDILAVPGVLLHGHGPFTWGKDVK 180 Query: 181 SAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQK 231 SAV+NSVVLEEV+KMNLF RELN FA+ELPQRILDKHYLRKHGK+AYYGQK Sbjct: 181 SAVLNSVVLEEVAKMNLFTRELNLFAKELPQRILDKHYLRKHGKNAYYGQK 231 >Q8EMP3.1 Q8EMP3_OCEIH L-ribulose-5-phosphate 4-epimerase Length = 231 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/231 (86%), Positives = 209/231 (90%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLEQLKEEVF+ANLDLPK GLVKYTWGN SA DR S LFVIKPSGV Y MK SDMVVVD Sbjct: 1 MLEQLKEEVFEANLDLPKQGLVKYTWGNASAFDRESGLFVIKPSGVDYKTMKASDMVVVD 60 Query: 61 FDGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHADT 120 DGNVVEG+L PSSDT THAVLYK Y E+GGIVHTHSTWATVWAQAGLDVPVMGTTHADT Sbjct: 61 LDGNVVEGELNPSSDTATHAVLYKRYPELGGIVHTHSTWATVWAQAGLDVPVMGTTHADT 120 Query: 121 FYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDAH 180 FYG+VPCTRFLTQEEIDRGYEAETGRVIIETFE+RGLD+ A+PGVLL GHAPFTWGKD Sbjct: 121 FYGAVPCTRFLTQEEIDRGYEAETGRVIIETFEERGLDVFAIPGVLLHGHAPFTWGKDVQ 180 Query: 181 SAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQK 231 SAV+NSVVLEEV+KMNLFARELN FA ELP RILDKHYLRKHG DAYYGQK Sbjct: 181 SAVVNSVVLEEVAKMNLFARELNRFAPELPDRILDKHYLRKHGGDAYYGQK 231 >Q3Y1E4.1 Q3Y1E4_ENTFC Class II aldolase/adducin, N-terminal Length = 232 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/231 (78%), Positives = 204/231 (88%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLEQLKEEV+QANLDLPKHGLVKYTWGNVSA D +R FVIKPSGV Y++M DMVVVD Sbjct: 1 MLEQLKEEVYQANLDLPKHGLVKYTWGNVSAFDPETRYFVIKPSGVSYEEMTADDMVVVD 60 Query: 61 FDGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHADT 120 D +++EG L PSSDTPTHAVLY+ + +IGGIVHTHSTWAT+WAQAGLDVP MGTTHADT Sbjct: 61 LDNHIIEGKLNPSSDTPTHAVLYRSFPQIGGIVHTHSTWATIWAQAGLDVPAMGTTHADT 120 Query: 121 FYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDAH 180 FYGSVPC RFLTQ+EID GYE ETG+VIIETF++R +D +A+PGVLL GH PFTWGKDA Sbjct: 121 FYGSVPCARFLTQQEIDSGYEYETGKVIIETFKERKIDPLAIPGVLLHGHGPFTWGKDAQ 180 Query: 181 SAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQK 231 SAVMN+VVL+EV KMNLF R+LN F+EELPQRILDKHYLRKHGK+AYYGQ Sbjct: 181 SAVMNAVVLDEVCKMNLFTRQLNSFSEELPQRILDKHYLRKHGKNAYYGQN 231 >A8FFH7.1 A8FFH7_BACP2 L-ribulose-5-phosphate 4-epimerase EC=5.1.3.4 Length = 234 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 181/231 (78%), Positives = 206/231 (89%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLE+LKEEVF+ANLDLPK+GLVK+TWGNVSA DR S LFVIKPSG+ YD++ DMVVVD Sbjct: 1 MLERLKEEVFEANLDLPKYGLVKFTWGNVSACDRDSGLFVIKPSGIAYDQLSAKDMVVVD 60 Query: 61 FDGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHADT 120 FDG VVEG+ PSSDT THAVLYKH+ EIGGI H+HS WATVWAQAGLD+ MGTTHADT Sbjct: 61 FDGEVVEGEYSPSSDTATHAVLYKHFDEIGGISHSHSMWATVWAQAGLDLQAMGTTHADT 120 Query: 121 FYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDAH 180 FYG+VPC RFLT+EE++RGYE ETGR+IIETFE+R LD+MAVPGVLL+GH PFTWGKDA Sbjct: 121 FYGAVPCARFLTEEEVNRGYEVETGRLIIETFEKRNLDVMAVPGVLLQGHGPFTWGKDAK 180 Query: 181 SAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQK 231 SAV NSV+LEEV+KMNLFA++LN +AE LPQRILDKHYLRKHG+ AYYGQK Sbjct: 181 SAVTNSVILEEVAKMNLFAKQLNEYAEPLPQRILDKHYLRKHGEHAYYGQK 231 >C2HE21.1 C2HE21_ENTFC L-ribulose-5-phosphate 4-epimerase EC=5.1.3.4 Length = 232 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 180/230 (78%), Positives = 203/230 (88%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLEQLKEEV+QANLDLPKHGLVKYTWGNVSA D +R FVIKPSGV Y++M DMVVVD Sbjct: 1 MLEQLKEEVYQANLDLPKHGLVKYTWGNVSAFDPETRYFVIKPSGVSYEEMTADDMVVVD 60 Query: 61 FDGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHADT 120 D +++EG L PSSDTPTHAVLY+ + +IGGIVHTHSTWAT+WAQAGLDVP MG THADT Sbjct: 61 LDNHIIEGKLNPSSDTPTHAVLYRSFPQIGGIVHTHSTWATIWAQAGLDVPAMGKTHADT 120 Query: 121 FYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDAH 180 FYGSVPC RFLTQ+EID GYE ETG+VIIETF++R +D +A+PGVLL GH PFTWGKDA Sbjct: 121 FYGSVPCARFLTQQEIDSGYEYETGKVIIETFKERKIDPLAIPGVLLHGHGPFTWGKDAQ 180 Query: 181 SAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQ 230 SAVMN+VVL+EV KMNLF R+LN F+EELPQRILDKHYLRKHGK+AYYGQ Sbjct: 181 SAVMNAVVLDEVCKMNLFTRQLNSFSEELPQRILDKHYLRKHGKNAYYGQ 230 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,472,087,342 Number of extensions: 62256198 Number of successful extensions: 148170 Number of sequences better than 1.0e-05: 1233 Number of HSP's gapped: 147768 Number of HSP's successfully gapped: 1233 Length of query: 231 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 100 Effective length of database: 1,826,543,238 Effective search space: 182654323800 Effective search space used: 182654323800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)