BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0038.p (477 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65J10.1 ARAA2_BACLD L-arabinose isomerase 2 EC=5.3.1.4 880 0.0 Q8EMP4.2 ARAA_OCEIH L-arabinose isomerase EC=5.3.1.4 858 0.0 Q3Y1E5.1 Q3Y1E5_ENTFC L-arabinose isomerase EC=5.3.1.4 815 0.0 C2HE20.1 C2HE20_ENTFC L-arabinose isomerase EC=5.3.1.4 813 0.0 B4ALH6.1 B4ALH6_BACPU L-arabinose isomerase EC=5.3.1.4 802 0.0 >Q65J10.1 ARAA2_BACLD L-arabinose isomerase 2 EC=5.3.1.4 Length = 474 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/473 (87%), Positives = 447/473 (94%) Query: 4 MSIVGAKQFWFVVGSQHLYGEEALGEVKAHAQAMTDALNKSGVLPYPLVLQDLAVSADTI 63 M G K+FWFVVGSQHLYGEE L EV+AHAQAMTDALN+S VLPYPLVLQDLAV+AD I Sbjct: 1 MLTTGKKEFWFVVGSQHLYGEETLAEVRAHAQAMTDALNESAVLPYPLVLQDLAVNADKI 60 Query: 64 TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWATIDMDF 123 TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQ+NESIPW TIDMDF Sbjct: 61 TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWPTIDMDF 120 Query: 124 MNLNQAAHGDREYGFINARLNKQNKVVVGYWERAEVQKQIAAWMDVAVAYNESFSIKVAR 183 MNLNQ+AHGDREYGFINARL KQNKVVVGYWER EVQ+QIA WMDVAVAYNESF+IKVAR Sbjct: 121 MNLNQSAHGDREYGFINARLKKQNKVVVGYWERPEVQQQIAEWMDVAVAYNESFNIKVAR 180 Query: 184 FGDNMRNVGVTEGDKVEAQIQFGWTVDYYGIGDLVEYVKAVKEEEIDALFAEYAELYDFE 243 FGDNMRNV VTEGDK+EAQIQFGWTVDY+GIGDLV+YV AV +EEI+ LFAEYA+LY+F+ Sbjct: 181 FGDNMRNVAVTEGDKIEAQIQFGWTVDYFGIGDLVQYVNAVTDEEINRLFAEYADLYEFD 240 Query: 244 YGTYSKEAWEASVKVQASYEIALKRFLDHGGYNAFTSNFEDLHGMKQLPGLAVQRLMAQG 303 YGTYS+E WE SVKVQASYEIA+KRFLD GGYNAFT+NFEDL+GMKQLPGLAVQRLMAQG Sbjct: 241 YGTYSREDWEKSVKVQASYEIAIKRFLDDGGYNAFTTNFEDLYGMKQLPGLAVQRLMAQG 300 Query: 304 YGFAGEGDWKTAALDRLLKVMSHNQNTGFMEDYTYEMAAGQEAILQSHMLEVDPCLASSK 363 YGFAGEGDWKTAALDRLLKVMS NQ+TGFMEDYTYE+AAGQE+ILQSHMLEVDP LAS+K Sbjct: 301 YGFAGEGDWKTAALDRLLKVMSRNQSTGFMEDYTYELAAGQESILQSHMLEVDPSLASNK 360 Query: 364 PKVVVSPLGIGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEAEAFEPTVPAPKLP 423 PK++VSPLGIGDREDPARLVFDGKAG+GVVVSMADFGTHYKLLINE AFEPTVPAP LP Sbjct: 361 PKIIVSPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHYKLLINEVSAFEPTVPAPNLP 420 Query: 424 VARVLWKVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQIVTYAKLVGLEYVVI 476 VARVLW+VKPNFQDGVKAW+ENGGGHHTVVSL LTTDQ++TYAKLV LEYVVI Sbjct: 421 VARVLWEVKPNFQDGVKAWLENGGGHHTVVSLFLTTDQMITYAKLVDLEYVVI 473 >Q8EMP4.2 ARAA_OCEIH L-arabinose isomerase EC=5.3.1.4 Length = 474 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/473 (84%), Positives = 441/473 (93%) Query: 4 MSIVGAKQFWFVVGSQHLYGEEALGEVKAHAQAMTDALNKSGVLPYPLVLQDLAVSADTI 63 M + K+FWFVVGSQ LYGEEAL EVKA AQ +TDALN+SG LPYP+VL+DLA++AD I Sbjct: 1 MLTLKEKEFWFVVGSQQLYGEEALQEVKAQAQTVTDALNESGALPYPIVLKDLAINADQI 60 Query: 64 TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWATIDMDF 123 T++MKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQ+NESIPW TIDMDF Sbjct: 61 TNVMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWDTIDMDF 120 Query: 124 MNLNQAAHGDREYGFINARLNKQNKVVVGYWERAEVQKQIAAWMDVAVAYNESFSIKVAR 183 MNLNQ+AHGDREYGFINARLNKQNKVVVGYW ++EVQ+QIA WMDVA AYNESF++KVAR Sbjct: 121 MNLNQSAHGDREYGFINARLNKQNKVVVGYWGKSEVQRQIAEWMDVAAAYNESFNVKVAR 180 Query: 184 FGDNMRNVGVTEGDKVEAQIQFGWTVDYYGIGDLVEYVKAVKEEEIDALFAEYAELYDFE 243 FGDNMRNV VT+GDK+EAQIQFGWTVDY+ IGDLV+YV AVKEEEID LFAEY + YDF+ Sbjct: 181 FGDNMRNVAVTDGDKIEAQIQFGWTVDYFAIGDLVQYVNAVKEEEIDVLFAEYKDSYDFD 240 Query: 244 YGTYSKEAWEASVKVQASYEIALKRFLDHGGYNAFTSNFEDLHGMKQLPGLAVQRLMAQG 303 YG YSK+ WEASV+VQASYEIA+KRFLD GGYNAFTSNFEDL+GMKQLPGLAVQRLM QG Sbjct: 241 YGDYSKDDWEASVRVQASYEIAIKRFLDDGGYNAFTSNFEDLYGMKQLPGLAVQRLMGQG 300 Query: 304 YGFAGEGDWKTAALDRLLKVMSHNQNTGFMEDYTYEMAAGQEAILQSHMLEVDPCLASSK 363 YGFAGEGDWKTAALDRLLKVMSHNQ+TGFMEDYTYE+A G+EAILQSHMLEVDP LAS+K Sbjct: 301 YGFAGEGDWKTAALDRLLKVMSHNQSTGFMEDYTYELAEGKEAILQSHMLEVDPTLASTK 360 Query: 364 PKVVVSPLGIGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEAEAFEPTVPAPKLP 423 PK+ V PLGIGDREDPARLVFDGKAG+GVVVSMADFGTH+KLLINE AFEPT PAP LP Sbjct: 361 PKITVFPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHFKLLINEVNAFEPTTPAPNLP 420 Query: 424 VARVLWKVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQIVTYAKLVGLEYVVI 476 VARVLW+VKPNFQDGVKAWIENGGGHHTVVSLNLTTDQ+V+YAKLVGL+Y+VI Sbjct: 421 VARVLWEVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQVVSYAKLVGLDYIVI 473 >Q3Y1E5.1 Q3Y1E5_ENTFC L-arabinose isomerase EC=5.3.1.4 Length = 474 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/474 (80%), Positives = 426/474 (89%) Query: 4 MSIVGAKQFWFVVGSQHLYGEEALGEVKAHAQAMTDALNKSGVLPYPLVLQDLAVSADTI 63 M +G K+FWFVVGSQHLYGEEAL EVK HAQ M D LN++G LPYP+ LQ+LAV+ADTI Sbjct: 1 MLNIGEKEFWFVVGSQHLYGEEALREVKKHAQEMVDELNENGQLPYPIRLQELAVTADTI 60 Query: 64 TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWATIDMDF 123 T IMKEVNYR+EVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPW TIDMDF Sbjct: 61 TKIMKEVNYREEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWKTIDMDF 120 Query: 124 MNLNQAAHGDREYGFINARLNKQNKVVVGYWERAEVQKQIAAWMDVAVAYNESFSIKVAR 183 MNLNQ+AHGDREYGFINARLNKQNK+VVGYW+R E+QK+IA WMDVAVAYNESF IKVAR Sbjct: 121 MNLNQSAHGDREYGFINARLNKQNKIVVGYWKRPEIQKEIADWMDVAVAYNESFGIKVAR 180 Query: 184 FGDNMRNVGVTEGDKVEAQIQFGWTVDYYGIGDLVEYVKAVKEEEIDALFAEYAELYDFE 243 FGDNMRNVGVTEGDKVEAQIQFGWTVDY+GIGDLV+ + V +EE+D LF EY ELY F+ Sbjct: 181 FGDNMRNVGVTEGDKVEAQIQFGWTVDYFGIGDLVQVIDRVSDEEVDQLFEEYKELYTFD 240 Query: 244 YGTYSKEAWEASVKVQASYEIALKRFLDHGGYNAFTSNFEDLHGMKQLPGLAVQRLMAQG 303 YG Y ++ WE VKVQA EI ++RFL+ GGYNAFT+NFEDL+GMKQLPGLAVQRLMA+G Sbjct: 241 YGDYEEKTWEEHVKVQAQQEIGIRRFLEEGGYNAFTTNFEDLYGMKQLPGLAVQRLMAEG 300 Query: 304 YGFAGEGDWKTAALDRLLKVMSHNQNTGFMEDYTYEMAAGQEAILQSHMLEVDPCLASSK 363 YGFAGEGDWKTAA+DRLLK+M+ ++TGFMEDYTYE+A+GQEAIL+SHM+EVDP LA++K Sbjct: 301 YGFAGEGDWKTAAIDRLLKIMARGKDTGFMEDYTYELASGQEAILESHMMEVDPTLAATK 360 Query: 364 PKVVVSPLGIGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEAEAFEPTVPAPKLP 423 P++VVSPL +GDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINE EAFEPT AP LP Sbjct: 361 PRIVVSPLSMGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEVEAFEPTTEAPNLP 420 Query: 424 VARVLWKVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQIVTYAKLVGLEYVVIN 477 VARVLWK KPNF +GV +WI+ GGGHHTVVSLNLTTDQI T+AKLV LE VVI Sbjct: 421 VARVLWKTKPNFHEGVHSWIQAGGGHHTVVSLNLTTDQIETWAKLVELETVVIR 474 >C2HE20.1 C2HE20_ENTFC L-arabinose isomerase EC=5.3.1.4 Length = 474 Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/474 (80%), Positives = 426/474 (89%) Query: 4 MSIVGAKQFWFVVGSQHLYGEEALGEVKAHAQAMTDALNKSGVLPYPLVLQDLAVSADTI 63 M +G K+FWFVVGSQHLYGEEAL EVK HAQ M D LN++G LPYP+ LQ+LAV+ADTI Sbjct: 1 MLNIGEKEFWFVVGSQHLYGEEALREVKKHAQEMVDELNENGQLPYPIRLQELAVTADTI 60 Query: 64 TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWATIDMDF 123 T IMKEVNYR+EVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPW TIDMDF Sbjct: 61 TKIMKEVNYREEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWKTIDMDF 120 Query: 124 MNLNQAAHGDREYGFINARLNKQNKVVVGYWERAEVQKQIAAWMDVAVAYNESFSIKVAR 183 MNLNQ+AHGDREYGFINARLNKQNK+VVGYW+R E+QK+IA WMDVAVAYNESF IKVAR Sbjct: 121 MNLNQSAHGDREYGFINARLNKQNKIVVGYWKRPEIQKEIADWMDVAVAYNESFGIKVAR 180 Query: 184 FGDNMRNVGVTEGDKVEAQIQFGWTVDYYGIGDLVEYVKAVKEEEIDALFAEYAELYDFE 243 FGDNMRNVGVTEGDKVEAQIQFGWTVDY+GIGDLV+ + V +EE++ LF EY ELY F+ Sbjct: 181 FGDNMRNVGVTEGDKVEAQIQFGWTVDYFGIGDLVQVIDRVSDEEVEQLFEEYKELYTFD 240 Query: 244 YGTYSKEAWEASVKVQASYEIALKRFLDHGGYNAFTSNFEDLHGMKQLPGLAVQRLMAQG 303 YG Y ++ WE VKVQA EI ++RFL+ GGYNAFT+NFEDL+GMKQLPGLAVQRLMA+G Sbjct: 241 YGDYEEKTWEEHVKVQAQQEIGIRRFLEEGGYNAFTTNFEDLYGMKQLPGLAVQRLMAEG 300 Query: 304 YGFAGEGDWKTAALDRLLKVMSHNQNTGFMEDYTYEMAAGQEAILQSHMLEVDPCLASSK 363 YGFAGEGDWKTAA+DRLLK+M+ ++TGFMEDYTYE+A+GQEAIL+SHM+EVDP LA++K Sbjct: 301 YGFAGEGDWKTAAIDRLLKIMARGKDTGFMEDYTYELASGQEAILESHMMEVDPTLAATK 360 Query: 364 PKVVVSPLGIGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEAEAFEPTVPAPKLP 423 P++VVSPL +GDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINE EAFEPT AP LP Sbjct: 361 PRIVVSPLSMGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEVEAFEPTTEAPNLP 420 Query: 424 VARVLWKVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQIVTYAKLVGLEYVVIN 477 VARVLWK KPNF +GV +WI+ GGGHHTVVSLNLTTDQI T+AKLV LE VVI Sbjct: 421 VARVLWKTKPNFHEGVHSWIQAGGGHHTVVSLNLTTDQIETWAKLVELETVVIR 474 >B4ALH6.1 B4ALH6_BACPU L-arabinose isomerase EC=5.3.1.4 Length = 473 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/467 (80%), Positives = 420/467 (89%) Query: 10 KQFWFVVGSQHLYGEEALGEVKAHAQAMTDALNKSGVLPYPLVLQDLAVSADTITSIMKE 69 K+ WF+VGSQHLYG+EAL +VKA AQ MTDALN+SG+LPYP++LQ+LAVSAD IT +MKE Sbjct: 7 KECWFIVGSQHLYGDEALQKVKADAQKMTDALNESGLLPYPVILQELAVSADQITKLMKE 66 Query: 70 VNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQYNESIPWATIDMDFMNLNQA 129 VNYRDEV GV+TWMHTFSPAKMWIRGT LLQKPLLHL TQY E IPW TIDMD+MNL+Q+ Sbjct: 67 VNYRDEVVGVMTWMHTFSPAKMWIRGTNLLQKPLLHLVTQYYEKIPWDTIDMDYMNLHQS 126 Query: 130 AHGDREYGFINARLNKQNKVVVGYWERAEVQKQIAAWMDVAVAYNESFSIKVARFGDNMR 189 AHGDREYG+INARLNKQN++V G+W + +VQ+QIA WMDVA AY+ESF IKVARFGDNMR Sbjct: 127 AHGDREYGYINARLNKQNQIVTGHWSKPDVQQQIAEWMDVAAAYHESFQIKVARFGDNMR 186 Query: 190 NVGVTEGDKVEAQIQFGWTVDYYGIGDLVEYVKAVKEEEIDALFAEYAELYDFEYGTYSK 249 +V VTEGDK+EAQIQ GWTVDY+GIGDLVEYV AV+E E+DALFAEY YD +YGTYS Sbjct: 187 HVAVTEGDKIEAQIQLGWTVDYFGIGDLVEYVSAVEEAEVDALFAEYLTQYDVDYGTYSV 246 Query: 250 EAWEASVKVQASYEIALKRFLDHGGYNAFTSNFEDLHGMKQLPGLAVQRLMAQGYGFAGE 309 E WE SVKVQA YEIA+KRFLD GGYNAFT+NFEDLHGMKQLPGLAVQRLMA+GYGFAGE Sbjct: 247 EDWEKSVKVQARYEIAIKRFLDEGGYNAFTTNFEDLHGMKQLPGLAVQRLMAKGYGFAGE 306 Query: 310 GDWKTAALDRLLKVMSHNQNTGFMEDYTYEMAAGQEAILQSHMLEVDPCLASSKPKVVVS 369 GDWKTAALDRLLKVMSH+Q+TGFMEDYTYEM +GQEA+LQSHMLEVDP LA +KP +VVS Sbjct: 307 GDWKTAALDRLLKVMSHHQSTGFMEDYTYEMTSGQEAVLQSHMLEVDPALAHTKPVIVVS 366 Query: 370 PLGIGDREDPARLVFDGKAGEGVVVSMADFGTHYKLLINEAEAFEPTVPAPKLPVARVLW 429 PLGIG+REDPARLVFDGKAGEGVVVS+ADFGTH+K LI E EAFEP AP LPVARVLW Sbjct: 367 PLGIGNREDPARLVFDGKAGEGVVVSIADFGTHFKWLIQEVEAFEPEEAAPHLPVARVLW 426 Query: 430 KVKPNFQDGVKAWIENGGGHHTVVSLNLTTDQIVTYAKLVGLEYVVI 476 K+KPNFQDGVKAWI+ GGGHHTVVSLNLT DQIV +AKLV EYVV+ Sbjct: 427 KIKPNFQDGVKAWIKQGGGHHTVVSLNLTVDQIVHFAKLVSAEYVVL 473 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,932,155,437 Number of extensions: 125014943 Number of successful extensions: 282699 Number of sequences better than 1.0e-05: 296 Number of HSP's gapped: 282115 Number of HSP's successfully gapped: 296 Length of query: 477 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 337 Effective length of database: 1,741,754,103 Effective search space: 586971132711 Effective search space used: 586971132711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)