BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0032.p (365 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PC59.1 C1PC59_BACCO Putative uncharacterized protein 114 1e-23 B1HXG3.1 B1HXG3_LYSSC Putative uncharacterized protein 109 5e-22 Q97LG1.1 Q97LG1_CLOAB Predicted membrane protein 97 2e-18 B1QCE6.1 B1QCE6_CLOBO Putative membrane protein 86 4e-15 B1S607.1 B1S607_9BIFI Putative uncharacterized protein 86 5e-15 >C1PC59.1 C1PC59_BACCO Putative uncharacterized protein Length = 361 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 173/357 (48%), Gaps = 35/357 (9%) Query: 5 ETIFISGFYLFIALMISIQAYIGLRTLLFGITLPAEALQDRGVRGIRRNYVLLTGGFAVI 64 ETI + F+ +A+M++I YI RT FG+T+P A D ++ +R+ Y + F+++ Sbjct: 2 ETIMVLIFFGLVAVMMAITPYITRRTESFGVTIPEAAYLDPELKKLRKQYAAVIIVFSIL 61 Query: 65 LGAACFLVTRHVTTSRSFLYWAAASLLLIMMSFFAIRI---SRMSAQRLKAARGWHVAVQ 121 L AA F+ V+TS+ A ++L+ + F I + +M A +K R W A Sbjct: 62 LAAALFIA---VSTSQLLQTGFALAVLVDIAGNFLIYLYFHRKMKA--IKKTRNW--AAG 114 Query: 122 TKRAASLAAG-RTQGSVLSFWWYSAHVAVMALCIFFVVVRWNAIPPSFATHMGPDGLPDQ 180 K+A + R+Q + S W+ H +V A + + IP A H +G P Sbjct: 115 KKQAIIVDPKFRSQKLIFSNAWFLIHASVTAATFLMTWLCYGRIPDRIAMHYDFNGTPTD 174 Query: 181 YTFKSVRTVFMMNIVQALMIVFFAGYNLMISRARTSLDPQDQEGSLRKQLKLKKIHSISA 240 + KS RTVF + VQ +++ F N MI++++ L+ + E SL + ++ ++ S Sbjct: 175 WVEKSYRTVFELPTVQLFLLILFIWLNTMIAKSKQQLNAERPEASLEQNVRFRRRWSAF- 233 Query: 241 WGISLLGIVNIGLLQAVILYGWNLNLLVRSNISFL-------VLFFLTLIGVLLYLRFRG 293 ++ GLL ++ + L+ +V I++L VL + +L + +G Sbjct: 234 -------MIITGLLMILLFFAIQLSFIVPVPIAWLSYGGMGAVLLIVAGAVLLSVITGQG 286 Query: 294 LDQIR--------DVPSQEERHWKWLGSIYANPEDPALFVPDRYGFLWTINMANPLG 342 +IR ++ +WK LG Y N DP+L+V R+G WT+N A+P G Sbjct: 287 GSRIRVGNGAVQGRFQYDDDAYWK-LGVFYFNRNDPSLWVEKRFGSGWTLNFAHPAG 342 >B1HXG3.1 B1HXG3_LYSSC Putative uncharacterized protein Length = 353 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/342 (24%), Positives = 164/342 (47%), Gaps = 30/342 (8%) Query: 22 IQAYIGLRTLLFGITLPAEALQDRGVRGIRRNYVLLTGGFAVILGAACFLVTRHVTTSRS 81 I +I T++FG+T+P + ++ + +++ Y + GG ++ +++ ++ TS S Sbjct: 8 IVPFIVRDTIVFGVTVPDQNIKHPALANLKKRYAQIVGGTGIVF-LIVMIISYNLFTSES 66 Query: 82 ----FLYWAAASLLLIMMSFFAIRISRMSAQRLKAARGWHVAVQTKRAASLAAGRTQGSV 137 FL S+L + M + + ++S LK W V ++ RA L A R++ + Sbjct: 67 VRGIFLLGCLWSMLTVSMGLYWVYHQKISV--LKRQEQWGVNIKQVRAVDLTA-RSRDEM 123 Query: 138 LSFWWYSAHVAVMALCIFFVVVRWNAIPPSFATHMGPDGLPDQYTFKSVRTVFMMNIVQA 197 L + +++ + + I + ++ ++ +P + A H GP G D + K+ T + ++ Sbjct: 124 LPWSFFAVPLVISGFLIIYTILHYDKMPANIAVHWGPSGEADAWRNKTYLTAISLPLIML 183 Query: 198 LMIVFFAGYNLMISRARTSLDPQDQEGSLRKQLKLKKIHS----ISAWGIS-LLGIVNIG 252 ++ G I R+ + +E SL QLK +K S + ++ I+ LL ++ + Sbjct: 184 MIQFMMWGIIDSIKRSAIKIAVNRKEESLEDQLKTRKYISWQILLVSYAITVLLTVLQLS 243 Query: 253 LLQAVILYGWNLNLLVRSNISFLVLFFLTLIGVLLY---------LRFRGLDQIRDVPSQ 303 + + G+ L + +LF ++G LL +R+ + + Sbjct: 244 NIYPAMTVGYKL-------LPLFILFLAVVLGSLLIYVVKKRKYRVRYEKNSDSQVMDVD 296 Query: 304 EERHWKWLGSIYANPEDPALFVPDRYGFLWTINMANPLGKTV 345 E+R+WK G IY N +DP++FV R+G WT+N+ANP G V Sbjct: 297 EDRYWKG-GLIYMNRQDPSVFVEKRFGVGWTMNLANPRGYIV 337 >Q97LG1.1 Q97LG1_CLOAB Predicted membrane protein Length = 372 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/361 (22%), Positives = 159/361 (44%), Gaps = 51/361 (14%) Query: 29 RTLLFGITLPAEALQDRGVRGIRRNYV----LLTGGFAVILGAACFLVTRHVTTSRSFLY 84 R + GI +P E + + ++ I + Y+ LL A +L + + + Sbjct: 31 RNIYLGIRIPQEEINNTKIKAIGKRYIWSNLLLGIPIAALLSYCVYKINNDIL------- 83 Query: 85 WAAASLLLIMMSFFAIRISRMSAQRLKAARGWHVAVQTKRA-----ASLAAGRTQGSVLS 139 + AA +L + +SF ++K GW ++TK+ S A +++ V Sbjct: 84 YLAAIILFMAISFLLYYYYNRKILKIKKEEGW---LKTKKQEIVIDTSFAKRKSERMVAG 140 Query: 140 FWWYSAHVAVMALCIFFVVVRWNAIPPSFATHMGPDGLPDQYTFKSVRTVFMMNIVQALM 199 W+ + + +C+ V ++ IP + TH +G P+ Y+ KS T+F M I Q ++ Sbjct: 141 SRWFLLSLIFIVICLIVNVKQYPNIPYRYPTHWDINGRPNAYSLKSYMTIFSMPINQLIL 200 Query: 200 I-VFFAGYNLMISRARTSLDPQDQEGSLRKQLKLKKIHSISAWGISLLGIVNIGLLQAVI 258 I V F Y + ++ LD ++ + S + +K + + +I A +VN L + Sbjct: 201 IAVMFFSYKITFW-SKNELDGRNPKDSGERNIKFRNVWAIYAI------VVNFFLQIIFL 253 Query: 259 LYGWNLNLLVRSNISFLVLFFLTLIGVLLY---------------LRFRGLD-----QIR 298 + + + +V +N F+++ +T+ V++ L+ RG +R Sbjct: 254 IQDFQIMHIVNTNPKFIIIAVITMTIVVICSSLIISIKVGQGGSRLKTRGNKSEFGINMR 313 Query: 299 DVPSQEERHWKWLGSIYANPEDPALFVPDRYGFLWTINMANPLGKTVAAAMIAVLVTAIL 358 D ++++W+ Y N DP++FV R+G WT+N+ N G +I L+ I Sbjct: 314 D----DDKYWRLGNLFYCNKNDPSIFVQKRFGIGWTVNVGNKFGVLFYVLIIVFLIICIA 369 Query: 359 V 359 + Sbjct: 370 I 370 >B1QCE6.1 B1QCE6_CLOBO Putative membrane protein Length = 376 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 76/341 (22%), Positives = 158/341 (46%), Gaps = 44/341 (12%) Query: 29 RTLLFGITLPAEALQDRGVRGIRRNYVLLTGGFAVILGAACFLVTRHVTTSRSFLYWAAA 88 + + G+ +P E + ++ I R++VL +I FL++ V + + Sbjct: 31 KDIFLGVRIPEEESEKTEIKNIYRSFVLWN---IIISLPVIFLLSFIVYKFNNIGLFVLF 87 Query: 89 SLLLIMMSFFAIRISRMSAQRLKAARGWH------VAVQTKRAASLAAGRTQGSVLSFWW 142 + + I +SF ++LK+ + W +AV T+ ++ S++S WW Sbjct: 88 TFIYIFISFLIYIKFNNDVKKLKSNKNWFKNKKQVIAVDTE----FSSENANKSLISPWW 143 Query: 143 YSAHVAVMALCIFFVVVRWNAIPPSFATHMGPDGLPDQYTFKSVRTVFMMNIVQALMI-V 201 + + ++ + IF + + +P ATH +G + Y KS ++ M +++ + + Sbjct: 144 FLIPILIILITIFMNIKAYPNLPNKVATHWDFNGNVNGYQNKSTFLIYQMPLMELFITSI 203 Query: 202 FFAGYNLM--ISRARTSLDPQDQEGSLRKQLKLKKIHSI----SAWGISL-LGIVNIGLL 254 FF Y ++ + ++++P+ E R +L ++I SI SA +++ L I+N ++ Sbjct: 204 FFLCYKIIGWSKKQISAVNPE--ESKTRNKL-FRRILSIYMTFSAIAMTIFLSIINFQIM 260 Query: 255 QAVILYGWNLNLLVRSNISFLVLFFLTLI-------------GVLLYLRFRGLDQIRDVP 301 + + ++ + + F ++F L++I G L L ++ ++ + Sbjct: 261 KVI-------DINDKYMMYFSLIFTLSIIIATILLGVKVGQGGSNLKLNYKNDNKNNFIN 313 Query: 302 SQEERHWKWLGSIYANPEDPALFVPDRYGFLWTINMANPLG 342 ++ HW +IY N EDP+LF+ R+G WTIN PLG Sbjct: 314 KDDDDHWILGNTIYYNKEDPSLFIEKRFGIGWTINAGRPLG 354 >B1S607.1 B1S607_9BIFI Putative uncharacterized protein Length = 368 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 49/350 (14%) Query: 20 ISIQAYIGLRTLLFGITLPAEALQDRGVRGIRRNYVLLTGGFAVILGAA---CFLV---- 72 +++ ++ RT+ FG+++P A D G+R + Y + G + + AA C ++ Sbjct: 17 VALAPWVVRRTVCFGVSVPVSAQHDPGIRRAKIGYTVCAGSVSAMAVAASVACLVLWGAL 76 Query: 73 --TRHVTTSRSFLYWAAASLLLIMMSFFAIRISRMSAQRLKAARGWHVAVQTKRAASLAA 130 T VTT SLLLI+ SF I R R+K RGW A +RAA LA Sbjct: 77 GGTIAVTT---------MSLLLIVASFALIVKYRKRTMRIKHERGWK-ASTLERAAFLAE 126 Query: 131 GRTQGSVLSFWWYSAHVAVMALCIFFVVVRWNAIPPSFATHMGPDGLPDQYTFKSVRTVF 190 L W H+ +++ + ++++P HM G D + KS+ V Sbjct: 127 -NAGPEPLGLQWELLHLVPVSIMTASAFMLYDSMPDRLPIHMNAAGQIDDWLDKSLWVVL 185 Query: 191 MMNI-VQALMIVFFAGYNLMISRARTSLDPQDQEGSLRKQLKLKKIHSISAWGISLLGI- 248 M + +Q +M+ + MI + +DP+ S + + AW + +L + Sbjct: 186 GMPLLIQLIMVATMTAVHAMIIHSPRQIDPERPSISGYAYGRFSR-----AWSVYVLIVG 240 Query: 249 --VNIGLLQAVILYG--WNLNLLVRSNISFLVLFFLTLIGVLLYL------------RFR 292 N+G + + +Y W+ +R+ S ++L L +I L L R Sbjct: 241 LTANLGFVGLIPMYANWWD----IRAWGSVMMLIALAIIVAELVLAVVFGQCGSRTWRLD 296 Query: 293 GL-DQIRDVPSQEERHWKWLGSIYANPEDPALFVPDRYGFLWTINMANPL 341 G D ++ ++ W LG Y +PE+PA+ VP R G +T NMA+PL Sbjct: 297 GENDDGNNMADDDDDEWV-LGMFYYSPENPAIVVPKRMGVGYTFNMAHPL 345 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,955,616,473 Number of extensions: 76535237 Number of successful extensions: 268282 Number of sequences better than 1.0e-05: 52 Number of HSP's gapped: 268211 Number of HSP's successfully gapped: 52 Length of query: 365 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 228 Effective length of database: 1,770,017,148 Effective search space: 403563909744 Effective search space used: 403563909744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 132 (55.5 bits)