BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0031.p
         (133 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1L1I2.1 C1L1I2_LISMC Putative transcription regulator, GntR family   140   3e-32
Q721Q4.1 Q721Q4_LISMF Transcriptional regulator, GntR family          140   5e-32
B8DEM5.1 B8DEM5_LISMH Transcriptional regulator, GntR family          140   5e-32
Q4EKC7.1 Q4EKC7_LISMO Transcriptional regulator, GntR family          140   5e-32
Q8Y8J2.1 Q8Y8J2_LISMO Lmo0909 protein                                 140   5e-32

>C1L1I2.1 C1L1I2_LISMC Putative transcription regulator, GntR family
          Length = 130

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 89/121 (73%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + + +DLQS+ PIY Q+ +Q+IEG+A  EL PGD LPSVR L  D+GIN HTVNK+Y +L
Sbjct: 1   MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEGF+Q+HR+KGV+V PDG+    E F  KL+ +L+ L     VRG++EE + + S+++
Sbjct: 61  KQEGFIQIHRQKGVVVHPDGVAKADELFFAKLQTKLKPLIAESVVRGVTEEKWLEVSKAI 120

Query: 121 Y 121
           +
Sbjct: 121 F 121


>Q721Q4.1 Q721Q4_LISMF Transcriptional regulator, GntR family
          Length = 130

 Score =  140 bits (352), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 89/121 (73%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + + +DLQS+ PIY Q+ +Q+IEG+A  EL PGD LPSVR L  D+GIN HTVNK+Y +L
Sbjct: 1   MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEGF+Q+HR+KGV++ PDG+    E F  KL+ +L+ L     VRG++EE + + S+++
Sbjct: 61  KQEGFIQIHRQKGVVIHPDGVAKADELFFAKLQTKLKPLIAESVVRGVTEEKWLEVSKAI 120

Query: 121 Y 121
           +
Sbjct: 121 F 121


>B8DEM5.1 B8DEM5_LISMH Transcriptional regulator, GntR family
          Length = 130

 Score =  140 bits (352), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 89/121 (73%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + + +DLQS+ PIY Q+ +Q+IEG+A  EL PGD LPSVR L  D+GIN HTVNK+Y +L
Sbjct: 1   MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEGF+Q+HR+KGV++ PDG+    E F  KL+ +L+ L     VRG++EE + + S+++
Sbjct: 61  KQEGFIQIHRQKGVVIHPDGVAKADELFFAKLQTKLKPLIAESVVRGVTEEKWLEVSKAI 120

Query: 121 Y 121
           +
Sbjct: 121 F 121


>Q4EKC7.1 Q4EKC7_LISMO Transcriptional regulator, GntR family
          Length = 130

 Score =  140 bits (352), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 89/121 (73%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + + +DLQS+ PIY Q+ +Q+IEG+A  EL PGD LPSVR L  D+GIN HTVNK+Y +L
Sbjct: 1   MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEGF+Q+HR+KGV++ PDG+    E F  KL+ +L+ L     VRG++EE + + S+++
Sbjct: 61  KQEGFIQIHRQKGVVIHPDGVAKADELFFAKLQTKLKPLIAESVVRGVTEEKWLEVSKAI 120

Query: 121 Y 121
           +
Sbjct: 121 F 121


>Q8Y8J2.1 Q8Y8J2_LISMO Lmo0909 protein
          Length = 130

 Score =  140 bits (352), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 89/121 (73%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + + +DLQS+ PIY Q+ +Q+IEG+A  EL PGD LPSVR L  D+GIN HTVNK+Y +L
Sbjct: 1   MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEGF+Q+HR+KGV++ PDG+    E F  KL+ +L+ L     VRG++EE + + S+++
Sbjct: 61  KQEGFIQIHRQKGVVIHPDGVAKADELFFTKLQTKLKPLIAESVVRGVTEEKWLEVSKAI 120

Query: 121 Y 121
           +
Sbjct: 121 F 121


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 736,800,053
Number of extensions: 27489917
Number of successful extensions: 92368
Number of sequences better than 1.0e-05: 1412
Number of HSP's gapped: 92605
Number of HSP's successfully gapped: 1412
Length of query: 133
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 35
Effective length of database: 2,137,436,733
Effective search space: 74810285655
Effective search space used: 74810285655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)