BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0029.p (400 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W8K7.1 C2W8K7_BACCE Putative uncharacterized protein 662 0.0 B3KHF0.1 B3KHF0_9BACI Putative uncharacterized protein 657 0.0 C2N3B3.1 C2N3B3_BACCE Putative uncharacterized protein 627 e-178 Q4MH44.1 Q4MH44_BACCE Glucose dehydrogenase 626 e-177 A9VGT2.1 A9VGT2_BACWK Putative uncharacterized protein 620 e-176 >C2W8K7.1 C2W8K7_BACCE Putative uncharacterized protein Length = 476 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/400 (80%), Positives = 343/400 (85%), Gaps = 4/400 (1%) Query: 1 LLGLAFHPDFYYNGLFYLHFSVAGTQGPGAIPGAPLESFKPNPCDSGTLNLRWTNREMYY 60 LLGLAFHP FYYNGLFYLH+SVA TQGPGA+ E FKPNPCD TLNLRW NRE Y Sbjct: 81 LLGLAFHPKFYYNGLFYLHYSVARTQGPGALS----EHFKPNPCDPKTLNLRWINRETQY 136 Query: 61 DHIDTVEEWSLQPNGQPQRRRTLLNLRRPFLNHNGVNSLNFSPETGKLVLTTGDGGSGFD 120 DHIDTVEEW LQ NGQPQ+RRTLLNLRRPF NHNGVNSLNFSPETG LVLTTGDGGSG+D Sbjct: 137 DHIDTVEEWILQLNGQPQKRRTLLNLRRPFFNHNGVNSLNFSPETGNLVLTTGDGGSGYD 196 Query: 121 PFNLSQDNMEIAGKIIEIDVVEETLIYNPPVATRFNELPVPIQETLTVIAKGVRNVPGIS 180 PFNLSQD+MEIAGKIIEIDV + T I NPPV TRFNELP IQETLTVI KGVRN+ GIS Sbjct: 197 PFNLSQDDMEIAGKIIEIDVAKNTFINNPPVVTRFNELPSSIQETLTVIVKGVRNITGIS 256 Query: 181 FEKVYNRYIKYVGNVGQDLVESIFSFVHYKPIPVTQLVQASLGNSELGQEGLINLGWRGW 240 F+K YN+YIKY GNVGQDLVESIFSFVHYKPIPVTQLVQASL S L Q G IN GWRGW Sbjct: 257 FQKFYNQYIKYAGNVGQDLVESIFSFVHYKPIPVTQLVQASLMRSNLDQIGFINFGWRGW 316 Query: 241 EGAFPTTVIKGCAASPTLDEKTIAYYNEAVETSVRRLQPLISYFHKDPRPDKLGGTALTG 300 EG FPT+ I+GC+A PTLDEKTIAYYNE ++TSVRRLQPL +YFHKD RPDK GGTALTG Sbjct: 317 EGDFPTSFIRGCSADPTLDEKTIAYYNETLKTSVRRLQPLTNYFHKDSRPDKFGGTALTG 376 Query: 301 VQAYLGNGIPGLTGSVVFTDLARDEGVHPPVRGFLAYARGQTDCKLNDFSIIETDYNFGS 360 VQ Y+GN IP LTGSVVFTDLAR E PPVRG LAY R +TD K NDFS+IETDYNFGS Sbjct: 377 VQPYMGNEIPNLTGSVVFTDLARHEESRPPVRGVLAYTRVRTDYKSNDFSVIETDYNFGS 436 Query: 361 GSAYYVSLGTNLDQTRLYLGVYGSMKVADFNQGTVFEMTP 400 SAYYV+LGTNLDQTRLYLGVYGSMKV DFNQGT+FE+ P Sbjct: 437 QSAYYVTLGTNLDQTRLYLGVYGSMKVTDFNQGTIFEIVP 476 >B3KHF0.1 B3KHF0_9BACI Putative uncharacterized protein Length = 475 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/400 (79%), Positives = 348/400 (87%) Query: 1 LLGLAFHPDFYYNGLFYLHFSVAGTQGPGAIPGAPLESFKPNPCDSGTLNLRWTNREMYY 60 LLGLAFHP FY N LFYLH+SVAGTQGPGA+PGAP ESFKPNPCD+ TLNL+W NRE Y Sbjct: 76 LLGLAFHPQFYVNRLFYLHYSVAGTQGPGALPGAPPESFKPNPCDASTLNLKWANREHQY 135 Query: 61 DHIDTVEEWSLQPNGQPQRRRTLLNLRRPFLNHNGVNSLNFSPETGKLVLTTGDGGSGFD 120 DHIDTVEEW LQ NGQP +RRTLLN+RRPFLNHNGVNSLNFSPETGKLVLTTGDGGSG+D Sbjct: 136 DHIDTVEEWILQSNGQPHKRRTLLNIRRPFLNHNGVNSLNFSPETGKLVLTTGDGGSGYD 195 Query: 121 PFNLSQDNMEIAGKIIEIDVVEETLIYNPPVATRFNELPVPIQETLTVIAKGVRNVPGIS 180 PFNLSQD+MEIAGKIIEIDVV+ T I NPPV TRFNELPVPIQETLTVIAKGVRN+PGIS Sbjct: 196 PFNLSQDDMEIAGKIIEIDVVKNTYIDNPPVVTRFNELPVPIQETLTVIAKGVRNIPGIS 255 Query: 181 FEKVYNRYIKYVGNVGQDLVESIFSFVHYKPIPVTQLVQASLGNSELGQEGLINLGWRGW 240 F++ YN+YIKYVGNVGQDLVESIFSFVHYKPIPVTQL+QASL +E EG INLGWRGW Sbjct: 256 FQRFYNQYIKYVGNVGQDLVESIFSFVHYKPIPVTQLIQASLMKTEPDHEGFINLGWRGW 315 Query: 241 EGAFPTTVIKGCAASPTLDEKTIAYYNEAVETSVRRLQPLISYFHKDPRPDKLGGTALTG 300 EGAFPT++I GC+A+P L+EKTIAYY EAV TSVRRLQPL SYFH+D R DK TALTG Sbjct: 316 EGAFPTSIITGCSANPALNEKTIAYYEEAVRTSVRRLQPLTSYFHEDSRTDKFRATALTG 375 Query: 301 VQAYLGNGIPGLTGSVVFTDLARDEGVHPPVRGFLAYARGQTDCKLNDFSIIETDYNFGS 360 VQ Y+G IP L+G+VVFTDLAR PVRG LAY + +TD KLNDF +IETD FGS Sbjct: 376 VQPYMGCEIPSLSGNVVFTDLARGPESQLPVRGVLAYTKVRTDGKLNDFHVIETDDPFGS 435 Query: 361 GSAYYVSLGTNLDQTRLYLGVYGSMKVADFNQGTVFEMTP 400 SAYYVSLGTNL+QTRLYLGVYGSMKVAD NQGTVFE+ P Sbjct: 436 QSAYYVSLGTNLNQTRLYLGVYGSMKVADANQGTVFEIIP 475 >C2N3B3.1 C2N3B3_BACCE Putative uncharacterized protein Length = 473 Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust. Identities = 304/399 (76%), Positives = 338/399 (84%), Gaps = 5/399 (1%) Query: 1 LLGLAFHPDFYYNGLFYLHFSVAGTQGPGAIPGAPLESFKPNPCDSGTLNLRWTNREMYY 60 LLGLAFHP FYYNGLFYLH+S+AGTQGPGA+ E FKPNPCD TLNLRW NRE Y Sbjct: 77 LLGLAFHPQFYYNGLFYLHYSLAGTQGPGALA----EPFKPNPCDPKTLNLRWINRETQY 132 Query: 61 DHIDTVEEWSLQPNGQPQRRRTLLNLRRPFLNHNGVNSLNFSPETGKLVLTTGDGGSGFD 120 DHIDTVEEW L PNGQPQ+RRTLLN+RRPFLNHNGVNSL+FSPETG LVLTTGDGGSG+D Sbjct: 133 DHIDTVEEWILHPNGQPQKRRTLLNIRRPFLNHNGVNSLSFSPETGALVLTTGDGGSGYD 192 Query: 121 PFNLSQDNMEIAGKIIEIDVVEETLIYNPPVATRFNELPVPIQETLTVIAKGVRNVPGIS 180 PFNLSQD+MEIAGKIIEIDV + TLI NPPV TRF+ELP IQETLTVIAKGVRN+ GIS Sbjct: 193 PFNLSQDDMEIAGKIIEIDVAKNTLINNPPVVTRFDELPSSIQETLTVIAKGVRNITGIS 252 Query: 181 FEKVYNRYIKYVGNVGQDLVESIFSFVHYKPIPVTQLVQASL-GNSELGQEGLINLGWRG 239 F++ YN+YIKYVGNVGQDLVESIFSFVHY+PIPVTQLVQASL S Q+G+IN GWRG Sbjct: 253 FQRFYNQYIKYVGNVGQDLVESIFSFVHYRPIPVTQLVQASLMMRSTSDQDGVINFGWRG 312 Query: 240 WEGAFPTTVIKGCAASPTLDEKTIAYYNEAVETSVRRLQPLISYFHKDPRPDKLGGTALT 299 WEG FPT+ I+ C+++PTLDEK IAYYNE V+TS++RLQP ISYFHK PDK GTALT Sbjct: 313 WEGNFPTSFIRRCSSTPTLDEKIIAYYNETVKTSMKRLQPFISYFHKGSGPDKFDGTALT 372 Query: 300 GVQAYLGNGIPGLTGSVVFTDLARDEGVHPPVRGFLAYARGQTDCKLNDFSIIETDYNFG 359 GVQ Y+GNGIP LTGS+VFTDL R E + PVRG LAY R D KLNDFS+IE DYNFG Sbjct: 373 GVQPYMGNGIPNLTGSIVFTDLTRKEESNSPVRGVLAYTRPSMDGKLNDFSVIEADYNFG 432 Query: 360 SGSAYYVSLGTNLDQTRLYLGVYGSMKVADFNQGTVFEM 398 S SAYYV+LGTNL+QTRLYLGVY S V D N+GT+FE+ Sbjct: 433 SQSAYYVNLGTNLNQTRLYLGVYESTNVTDLNKGTIFEI 471 >Q4MH44.1 Q4MH44_BACCE Glucose dehydrogenase Length = 476 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 292/400 (73%), Positives = 336/400 (84%), Gaps = 4/400 (1%) Query: 1 LLGLAFHPDFYYNGLFYLHFSVAGTQGPGAIPGAPLESFKPNPCDSGTLNLRWTNREMYY 60 LLGLAFHP FY NGLFYLH+SVAGTQGPGA+ E FKPNPCDS TLNL+W NR+ Y Sbjct: 81 LLGLAFHPQFYQNGLFYLHYSVAGTQGPGALS----EQFKPNPCDSKTLNLKWKNRDTQY 136 Query: 61 DHIDTVEEWSLQPNGQPQRRRTLLNLRRPFLNHNGVNSLNFSPETGKLVLTTGDGGSGFD 120 DHIDT+EEW LQ NGQP++RRTLLN++RPF NHNGVN+LNFSPETGKLV T GDGGSG+D Sbjct: 137 DHIDTIEEWILQSNGQPEKRRTLLNIKRPFFNHNGVNTLNFSPETGKLVFTNGDGGSGYD 196 Query: 121 PFNLSQDNMEIAGKIIEIDVVEETLIYNPPVATRFNELPVPIQETLTVIAKGVRNVPGIS 180 PFNLSQD++EI GKIIEIDV + T I NPPV TRFNELP+ IQETLTVIAKGVRN+ GIS Sbjct: 197 PFNLSQDDLEIVGKIIEIDVSKNTFINNPPVVTRFNELPLSIQETLTVIAKGVRNITGIS 256 Query: 181 FEKVYNRYIKYVGNVGQDLVESIFSFVHYKPIPVTQLVQASLGNSELGQEGLINLGWRGW 240 F++ YN+YIKY GNVGQD+VESIFSFV YKPIPVT+LVQ + QEG+IN GWRGW Sbjct: 257 FQRFYNQYIKYAGNVGQDIVESIFSFVQYKPIPVTELVQMHVMRLTSNQEGVINFGWRGW 316 Query: 241 EGAFPTTVIKGCAASPTLDEKTIAYYNEAVETSVRRLQPLISYFHKDPRPDKLGGTALTG 300 EG PT+ I+ CA +PTLDE+T+AYYNE +ETSV+R+QPLISYFHKDPRPDK GGT+LTG Sbjct: 317 EGELPTSFIRHCAENPTLDERTMAYYNETIETSVKRIQPLISYFHKDPRPDKFGGTSLTG 376 Query: 301 VQAYLGNGIPGLTGSVVFTDLARDEGVHPPVRGFLAYARGQTDCKLNDFSIIETDYNFGS 360 VQ Y+G IP L GSVVFTDLA+ E PPV+G LAY + TD K DF +IETDY+FG+ Sbjct: 377 VQPYMGTAIPNLHGSVVFTDLAKKEESRPPVKGVLAYTKASTDGKHADFHVIETDYDFGT 436 Query: 361 GSAYYVSLGTNLDQTRLYLGVYGSMKVADFNQGTVFEMTP 400 +AYY+SLGTNLDQTRLYLGVYGSMKV DFN+GT+FE+ P Sbjct: 437 QAAYYMSLGTNLDQTRLYLGVYGSMKVTDFNKGTIFEIIP 476 >A9VGT2.1 A9VGT2_BACWK Putative uncharacterized protein Length = 476 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 291/400 (72%), Positives = 334/400 (83%), Gaps = 4/400 (1%) Query: 1 LLGLAFHPDFYYNGLFYLHFSVAGTQGPGAIPGAPLESFKPNPCDSGTLNLRWTNREMYY 60 LLGLAFHP FY NGLFYLH+SVAGTQGPGA+ E FKPNPCD TLNL+W NR++ Y Sbjct: 81 LLGLAFHPQFYQNGLFYLHYSVAGTQGPGALS----EPFKPNPCDPKTLNLKWVNRDIQY 136 Query: 61 DHIDTVEEWSLQPNGQPQRRRTLLNLRRPFLNHNGVNSLNFSPETGKLVLTTGDGGSGFD 120 DHIDTVEEW LQ + QPQ+RRTLLN+RRPF NHNGVNSLNFSPE+GKLV T GDGGSG+D Sbjct: 137 DHIDTVEEWILQSHSQPQKRRTLLNIRRPFFNHNGVNSLNFSPESGKLVFTNGDGGSGYD 196 Query: 121 PFNLSQDNMEIAGKIIEIDVVEETLIYNPPVATRFNELPVPIQETLTVIAKGVRNVPGIS 180 PFNLSQD++EIAGKIIEIDV + T I NPPV TRFNE P+ IQETLTVIAKGVRN+ GIS Sbjct: 197 PFNLSQDDLEIAGKIIEIDVSKNTFINNPPVVTRFNEFPLSIQETLTVIAKGVRNITGIS 256 Query: 181 FEKVYNRYIKYVGNVGQDLVESIFSFVHYKPIPVTQLVQASLGNSELGQEGLINLGWRGW 240 F++ YN+YIKY GNVGQD+VESIFSFVHYKPIPVT+LVQ L S Q+G IN GWRGW Sbjct: 257 FQRFYNQYIKYAGNVGQDIVESIFSFVHYKPIPVTELVQTHLMRSTPNQDGFINFGWRGW 316 Query: 241 EGAFPTTVIKGCAASPTLDEKTIAYYNEAVETSVRRLQPLISYFHKDPRPDKLGGTALTG 300 EG FPT+ I+ C+ +PTLDE+T+AYYNE +ETSVRR+QPLISYFHKD R DK GGT+LTG Sbjct: 317 EGEFPTSFIRRCSENPTLDERTMAYYNETIETSVRRIQPLISYFHKDSRADKFGGTSLTG 376 Query: 301 VQAYLGNGIPGLTGSVVFTDLARDEGVHPPVRGFLAYARGQTDCKLNDFSIIETDYNFGS 360 VQ Y+G IP LTGS+VFTDLA+ E PV+G LA+ R D K NDF +IET Y+FG+ Sbjct: 377 VQPYMGTTIPSLTGSIVFTDLAKKEEFQSPVKGVLAFTRAALDGKRNDFHVIETTYDFGT 436 Query: 361 GSAYYVSLGTNLDQTRLYLGVYGSMKVADFNQGTVFEMTP 400 +AYYVSLGTNLDQTRLYLGVYGSMKV +FN+GT+FE+ P Sbjct: 437 QAAYYVSLGTNLDQTRLYLGVYGSMKVTEFNKGTIFEIVP 476 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,659,314,672 Number of extensions: 121197587 Number of successful extensions: 277590 Number of sequences better than 1.0e-05: 135 Number of HSP's gapped: 277506 Number of HSP's successfully gapped: 135 Length of query: 400 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 262 Effective length of database: 1,760,596,133 Effective search space: 461276186846 Effective search space used: 461276186846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)