BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0027.p
         (69 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3BGX1.1 C3BGX1_9BACI Transporter                                      79   2e-13
C2ZZS8.1 C2ZZS8_BACCE Transporter                                      79   2e-13
C2Z9T7.1 C2Z9T7_BACCE Transporter                                      79   2e-13
C2PXN7.1 C2PXN7_BACCE Transporter                                      78   2e-13
C3AIC3.1 C3AIC3_BACMY Transporter                                      78   2e-13

>C3BGX1.1 C3BGX1_9BACI Transporter
          Length = 127

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 44/67 (65%)

Query: 3   ATTFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQ 62
           A+ FA+DPG I  CLFRNTYIWL NGEQFW++P+FVGR S+              ID  +
Sbjct: 61  ASPFAVDPGAISFCLFRNTYIWLTNGEQFWYYPIFVGRRSVTGFRWNGRFWVIFGIDTRR 120

Query: 63  IRSFTCF 69
           I SFTCF
Sbjct: 121 ISSFTCF 127


>C2ZZS8.1 C2ZZS8_BACCE Transporter
          Length = 130

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 45/67 (67%)

Query: 3   ATTFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQ 62
           A+ FA+DPG I  CLFRNTYIWL+NGEQFW+FP+FVG  S+A             ID  +
Sbjct: 64  ASPFAVDPGAISLCLFRNTYIWLSNGEQFWYFPIFVGPRSVAGFRWNGRFWVIFGIDTRR 123

Query: 63  IRSFTCF 69
           I SFTCF
Sbjct: 124 IISFTCF 130


>C2Z9T7.1 C2Z9T7_BACCE Transporter
          Length = 130

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 45/67 (67%)

Query: 3   ATTFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQ 62
           A+ FA+DPG I  CLFRNTYIWL+NGEQFW+FP+FVG  S+A             ID  +
Sbjct: 64  ASPFAVDPGAISLCLFRNTYIWLSNGEQFWYFPIFVGPRSVAGFRWNGRFWVIFGIDTRR 123

Query: 63  IRSFTCF 69
           I SFTCF
Sbjct: 124 IISFTCF 130


>C2PXN7.1 C2PXN7_BACCE Transporter
          Length = 105

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 45/67 (67%)

Query: 3   ATTFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQ 62
           A+ FA+DPG I  CLFRNTYIWL+NGEQFW+FP+FVG  S+A             ID  +
Sbjct: 39  ASPFAVDPGAISLCLFRNTYIWLSNGEQFWYFPIFVGPRSVAGFRWNGRFWVIFGIDTRR 98

Query: 63  IRSFTCF 69
           I SFTCF
Sbjct: 99  IISFTCF 105


>C3AIC3.1 C3AIC3_BACMY Transporter
          Length = 133

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 44/67 (65%)

Query: 3   ATTFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQ 62
           A+ FA+DPG I  CLFRNTYIWL NGEQFW++P+FVGR S+              ID  +
Sbjct: 67  ASPFAVDPGAISFCLFRNTYIWLTNGEQFWYYPIFVGRRSVTGFRWNGRFWVIFGIDTRR 126

Query: 63  IRSFTCF 69
           I SFTCF
Sbjct: 127 ISSFTCF 133


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.335    0.146    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 328,156,126
Number of extensions: 7974999
Number of successful extensions: 17326
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 17323
Number of HSP's successfully gapped: 32
Length of query: 69
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 28
Effective length of database: 2,674,434,588
Effective search space: 74884168464
Effective search space used: 74884168464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 125 (52.8 bits)