BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0016.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5EMA1.1 C5EMA1_9FIRM Putative uncharacterized protein 261 5e-68 A7VTG0.1 A7VTG0_9CLOT Putative uncharacterized protein 253 2e-65 B3K651.1 B3K651_9BACI Binding-protein-dependent transport system... 251 4e-65 A7VQI1.1 A7VQI1_9CLOT Putative uncharacterized protein 250 1e-64 C4ZB14.1 C4ZB14_9FIRM Sugar ABC transporter (Permease) 249 2e-64 >C5EMA1.1 C5EMA1_9FIRM Putative uncharacterized protein Length = 282 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 123/257 (47%), Positives = 178/257 (69%), Gaps = 1/257 (0%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXX 81 +Q+YP++W+F++S K TT+ S P +LP T NY +++ G + Y NS Sbjct: 27 VQLYPVLWLFLASIKPTTELSAA-PFALPKSPTLANYIKIFSDGKILGYMWNSFKITAVS 85 Query: 82 XXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTS 141 SA A F I K F+ + + F GIMIP+Q+ LIPLFI Y+++ I+NT S Sbjct: 86 IVLIVFLSATAGFAISKFRFRLTGRIYAFFTFGIMIPVQITLIPLFIFYSRMHILNTSFS 145 Query: 142 LILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVV 201 LILPQVGFALP+S+ LFVSFY +I NE++E+A++DGC Y+ F ++FPL++NT++TV Sbjct: 146 LILPQVGFALPLSVMLFVSFYSFIPNELIESAIVDGCSPYRTFTSIVFPLAKNTVITVAS 205 Query: 202 MNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYF 261 M+ IF+WN+FIFANTFI + ++T+ +GL DY+G +G DWG+T+AAI+++ +P M+VYF Sbjct: 206 MHSIFIWNDFIFANTFISEQAAKTVALGLKDYVGAFGNVDWGSTYAAIAVSILPPMIVYF 265 Query: 262 IFNKSVISGMTAGATKG 278 + NK V GMTAGA KG Sbjct: 266 VLNKWVAEGMTAGAVKG 282 >A7VTG0.1 A7VTG0_9CLOT Putative uncharacterized protein Length = 287 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 129/255 (50%), Positives = 174/255 (68%) Query: 23 QVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXX 82 Q+YP++W+ I+S K+ D +P S P NY + K +L YF NS Sbjct: 32 QLYPIIWMIITSLKSPADVQRSSPFSFPDPIFTENYINAIKKADLLLYFRNSAVVTIITM 91 Query: 83 XXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSL 142 FS+ A F +EK+ FK +VL FL GI IPI + LIPLFI+Y +G+++T SL Sbjct: 92 VLVILFSSTAGFALEKLRFKAHGAVLSYFLTGITIPIHITLIPLFIIYKSVGMLDTWFSL 151 Query: 143 ILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVM 202 ILPQ+GF LP+SIYLF +FY+YI N ++EAA++DG V + F+ + FPLS+NTI+TV + Sbjct: 152 ILPQIGFCLPLSIYLFTAFYRYIPNSMLEAAIIDGASVPRSFFSIYFPLSKNTIMTVATV 211 Query: 203 NLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFI 262 N I VWNEF+FANTF RTIPVGL D++G+YG DWG TFAAI++T +P +++YF+ Sbjct: 212 NFISVWNEFVFANTFTLSTSMRTIPVGLKDFVGEYGKVDWGCTFAAIALTLLPLLILYFV 271 Query: 263 FNKSVISGMTAGATK 277 FNKS+ISGMTAGA K Sbjct: 272 FNKSIISGMTAGAIK 286 >B3K651.1 B3K651_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 124/257 (48%), Positives = 180/257 (70%), Gaps = 1/257 (0%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXX 81 +Q+YP+VW+ +SSFK++ + + P SLP+ ++F NY +V+ +L Y N+ Sbjct: 22 VQIYPVVWLMLSSFKSSIELT-TKPFSLPTLWSFDNYAAVFRDSSLLLYIKNTAIVTFSC 80 Query: 82 XXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTS 141 SA A F + KM + + +L F GIMIPIQV LIPLFI+Y + G++N+ + Sbjct: 81 LLLIVFLSATAGFALVKMQSRLNSKLLLFFTIGIMIPIQVTLIPLFIMYKESGLLNSYLA 140 Query: 142 LILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVV 201 LILPQVGFALP+SI +F SFY+Y+ NE++EAAV+DGC +YQVF ++I PL+ NT +TV Sbjct: 141 LILPQVGFALPLSILIFTSFYRYVPNELIEAAVIDGCNIYQVFLKVISPLTINTTITVAS 200 Query: 202 MNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYF 261 +N IF+WN+FIF+NTF +D + +TI VGL ++IG +G TDWG TFAAI I+ IP +V Y Sbjct: 201 INFIFIWNDFIFSNTFTNDKQYKTIAVGLQEFIGAFGATDWGQTFAAICISIIPIIVTYL 260 Query: 262 IFNKSVISGMTAGATKG 278 + N+ V++G++ GA KG Sbjct: 261 LLNRYVMAGVSDGAVKG 277 >A7VQI1.1 A7VQI1_9CLOT Putative uncharacterized protein Length = 279 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/253 (50%), Positives = 166/253 (65%), Gaps = 1/253 (0%) Query: 25 YPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXXXX 84 YP+ WV SS K + + + +LP F FGNY V + L YF NS Sbjct: 27 YPIFWVISSSLKTSEELVQAS-YTLPHSFYFGNYIRVLTESKLPLYFLNSIIVAVSVLLG 85 Query: 85 XXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSLIL 144 A AF I K+ FK S++++ FL G+MIPI LIP+F +YN +G+ NT SLIL Sbjct: 86 IVVIGAPVAFAISKLRFKQSKTLMSFFLMGMMIPIFASLIPMFRIYNVVGLRNTYLSLIL 145 Query: 145 PQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVMNL 204 PQ+GF LPISIYL+V F K+I + I EAAV+DG G +QVF R+IFP+S+NT +TVV N Sbjct: 146 PQIGFNLPISIYLYVGFMKFIPDAIHEAAVIDGAGAFQVFSRIIFPMSKNTTITVVTYNF 205 Query: 205 IFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFIFN 264 +FVWNEF FANTF+ + +T+P GL D+IG G DWGATFAAI++ +PT+V+YF N Sbjct: 206 VFVWNEFTFANTFMTKSEMKTLPNGLNDFIGAMGFVDWGATFAAITLAILPTLVIYFFLN 265 Query: 265 KSVISGMTAGATK 277 K+V+ GM AGA K Sbjct: 266 KNVMEGMAAGAVK 278 >C4ZB14.1 C4ZB14_9FIRM Sugar ABC transporter (Permease) Length = 275 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/257 (46%), Positives = 173/257 (67%), Gaps = 1/257 (0%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXX 81 IQVYP++W+F++S K T + S P +LP TF N+ V++ G +G Y NS Sbjct: 20 IQVYPIIWLFMASVKPTIELS-TTPFALPKVVTFENFIKVFSDGKIGIYMWNSLKVTGIS 78 Query: 82 XXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTS 141 S+ + + K + + + F GIM+P+Q+ LIPLFI Y+K+GI+NT S Sbjct: 79 LILIIFLSSTVGYALSKFRIRGKKQIYKFFTFGIMVPVQITLIPLFIFYSKMGILNTSFS 138 Query: 142 LILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVV 201 LILPQVGFALP+++ +FVSFY ++ +E++EAA++DGC F +++FPL+RNTI+T+ Sbjct: 139 LILPQVGFALPLAVMMFVSFYDFVPDELVEAAIVDGCNPGVTFIKIVFPLARNTIITIAS 198 Query: 202 MNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYF 261 M I +WN+FIFANTFI D ++T+ +GL DY+G +G DWG TFAAI I+ +P +++YF Sbjct: 199 MYSILIWNDFIFANTFISDSNAKTVAMGLKDYVGAFGNVDWGLTFAAIVISILPPLIIYF 258 Query: 262 IFNKSVISGMTAGATKG 278 NK V +GMT GATKG Sbjct: 259 ALNKWVTAGMTMGATKG 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,446,393,210 Number of extensions: 54192252 Number of successful extensions: 195980 Number of sequences better than 1.0e-05: 5854 Number of HSP's gapped: 186837 Number of HSP's successfully gapped: 5854 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)