BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0015.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1R3C3.1 A1R3C3_ARTAT Putative ABC-type sugar transport systems,... 309 2e-82 B3K650.1 B3K650_9BACI Binding-protein-dependent transport system... 298 4e-79 C5EMA2.1 C5EMA2_9FIRM Sugar ABC transporter permease 285 5e-75 C4ZB13.1 C4ZB13_9FIRM Putative ABC-type sugar transport systems,... 275 4e-72 C4G1L8.1 C4G1L8_ABIDE Putative uncharacterized protein 272 3e-71 >A1R3C3.1 A1R3C3_ARTAT Putative ABC-type sugar transport systems, permease components Length = 293 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 145/259 (55%), Positives = 195/259 (75%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 S++ SFFSW+G+S+M ++G NY +M D FW++F N L+Y+ I + +Q+ L+VA Sbjct: 32 SLFLSFFSWNGISEMEFVGLANYVRMLTADDIFWRSFFNALLYLAICLVLQLGGALVVAS 91 Query: 97 LLTSITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWL 156 LLTS+ +GREL KTLY PA+I++VAIA LF +YS +PVG+LN L +GLG + R WL Sbjct: 92 LLTSLRRGRELIKTLYLLPAVISTVAIAFLFVRIYSIDPVGLLNQLLHWIGLGSFERAWL 151 Query: 157 SDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLI 216 SD+ L+AVS PEGWR+ GLYM+I+Y+ALI++P ++EEAA +DGAS W LF I+ P I Sbjct: 152 SDVNTVLAAVSAPEGWRFTGLYMLIIYAALIAVPKELEEAAVLDGASKWTLFTKIRFPYI 211 Query: 217 KPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMAVF 276 +PV + + IMATT L+GFDIPYLMTNGGPG+ +ELL TYMYKTAF+S DFGY S ++VF Sbjct: 212 RPVWITTTIMATTYGLRGFDIPYLMTNGGPGQSSELLTTYMYKTAFTSTDFGYASTISVF 271 Query: 277 IVVESLIAVAFIRRMMDSK 295 IV+E L+AV I M+ K Sbjct: 272 IVIECLVAVGLILFMLKRK 290 >B3K650.1 B3K650_9BACI Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 144/260 (55%), Positives = 193/260 (74%), Gaps = 3/260 (1%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 S+ + F W+G+ D YIG NY KMF D FW A NNL+YV I+V MQVF+GL A+ Sbjct: 32 SLNYGFQDWNGIKDASYIGLGNYIKMFQ-DPYFWNAVKNNLVYVVIVVLMQVFIGLFFAL 90 Query: 97 LLTSITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWL 156 LL+ + KG LF+TLY+ PA++ +VAIAQ+F+N YS +P+G+LN L+ +GLG WL Sbjct: 91 LLSYVKKGASLFRTLYYLPAVVVTVAIAQMFRNFYSLQPLGLLNMFLEWIGLGHLQSAWL 150 Query: 157 SDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLI 216 SD AL AVS+PEGWR+ G+YM+I Y+ALI+IP +IEEAA +DG + W L R IK+P I Sbjct: 151 SDPHTALIAVSIPEGWRFTGMYMVIFYAALIAIPKEIEEAATIDGVNGWQLIRHIKLPSI 210 Query: 217 KPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMAVF 276 K VL +++IM TTGAL+GFDIPY++ G G TEL+ TYMYK AF+S+ +GYGSA+AVF Sbjct: 211 KHVLSLALIMCTTGALRGFDIPYII--GVQGSTTELVTTYMYKKAFTSIQYGYGSAIAVF 268 Query: 277 IVVESLIAVAFIRRMMDSKE 296 IV+ESL+AV IR + +S++ Sbjct: 269 IVIESLLAVLIIRAIFNSRK 288 >C5EMA2.1 C5EMA2_9FIRM Sugar ABC transporter permease Length = 300 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/290 (47%), Positives = 199/290 (68%), Gaps = 3/290 (1%) Query: 8 ILRNRKXXXXXXXXXXXXXXXXXXXXXXWSMYFSFFSWDGVSDMLYIGFDNYAKMFGGDK 67 ILR+RK S+ SF W G+ ++G DNY MF D Sbjct: 3 ILRDRKAFCVFLLPGLLFYILAVFYPIEESIRLSFMEWGGIGARKFVGLDNYIHMFR-DP 61 Query: 68 TFWKAFSNNLIYVFIIVAMQVFLGLLVAILLTSITKGRELFKTLYFAPAIITSVAIAQLF 127 F+ AF NNLIY+ I+V+MQ+ +GL+ A+LLT +TK L KTLY+ P IIT+VA+ QLF Sbjct: 62 VFYTAFVNNLIYLVIVVSMQLMIGLIFAVLLTYMTKHVALIKTLYYVPCIITTVAVTQLF 121 Query: 128 QNVYSFEPVGILNFCLQQMGLGDWSRPWLSDLKWALSAVSVPEGWRYIGLYMIILYSALI 187 +++Y+ EPVG++N L G+ S WL+++K L+AVS+PEGWR+ G+YM+I Y+ALI Sbjct: 122 RSMYATEPVGLINQILNVFGIRSIS--WLTNIKTVLAAVSLPEGWRFAGMYMVIFYAALI 179 Query: 188 SIPSDIEEAARMDGASSWNLFRSIKMPLIKPVLMVSIIMATTGALKGFDIPYLMTNGGPG 247 S+ ++ EAAR+DGA+ W L IK+P+I+ ++++++ M TGAL+GFDIP+L+TNGGPG Sbjct: 180 SLDKEVMEAARVDGATDWQLLIRIKLPMIRQIILLTLTMCLTGALRGFDIPFLLTNGGPG 239 Query: 248 RVTELLPTYMYKTAFSSLDFGYGSAMAVFIVVESLIAVAFIRRMMDSKET 297 V+EL+ TYMYK AFSS +GYGS ++VFI++ES++ VA +R +M + T Sbjct: 240 NVSELMSTYMYKKAFSSNQYGYGSTLSVFIIIESILVVALLRAVMSEERT 289 >C4ZB13.1 C4ZB13_9FIRM Putative ABC-type sugar transport systems, permease component Length = 299 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 128/260 (49%), Positives = 190/260 (73%), Gaps = 1/260 (0%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 S+ SF W+G+ D + G NY MF D TF+K+F NNLIY+ I+V MQ+ +GL+ A+ Sbjct: 36 SIRLSFMEWNGIGDKTFAGLQNYVTMFH-DPTFYKSFLNNLIYLLIVVVMQLGIGLVFAV 94 Query: 97 LLTSITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWL 156 LLT + K KTLY+ P IIT+VAIAQLF+++Y+ EP+G++N Q +G+ WL Sbjct: 95 LLTFMKKHVTFVKTLYYVPCIITTVAIAQLFRSMYATEPMGLINQFFQAIGMEGMVTSWL 154 Query: 157 SDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLI 216 +++ AL AVSVPEGWR+ G+YM+I Y+ALIS+ + EAA++DGA+ + + IK+PLI Sbjct: 155 ANIHTALMAVSVPEGWRFTGMYMVIFYAALISLDPSVYEAAKVDGATDFQILLKIKLPLI 214 Query: 217 KPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMAVF 276 K ++++++ M TGAL+GFDIP+L+T+GGPG +ELL TYMYK AFS+ +GYGSA+AVF Sbjct: 215 KDIILLTLTMCLTGALRGFDIPFLLTSGGPGNASELLSTYMYKKAFSNNQYGYGSALAVF 274 Query: 277 IVVESLIAVAFIRRMMDSKE 296 I++ES++ V +R++ ++ Sbjct: 275 IIIESMLVVFILRKIFSERK 294 >C4G1L8.1 C4G1L8_ABIDE Putative uncharacterized protein Length = 299 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 125/260 (48%), Positives = 192/260 (73%), Gaps = 1/260 (0%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 S+ SF SW+G+ D + G NY MF D+TF+KAF NNL+Y+ I+V+MQ+ +GL+ A+ Sbjct: 36 SIRLSFMSWNGIGDRTFAGLQNYITMFK-DRTFYKAFINNLVYLLIVVSMQLTIGLVFAV 94 Query: 97 LLTSITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWL 156 LLT + K L KTLY+ P IIT+VAIAQLF+++Y+ EP+G++N +G+ + W+ Sbjct: 95 LLTFMKKHVILIKTLYYVPCIITTVAIAQLFRSMYATEPMGLINQFFSAIGMDNMVTSWI 154 Query: 157 SDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLI 216 +++K L+AVS+PEGWR+ G+YM+I Y+AL+S+ + EAA++DGA+ + IK+PLI Sbjct: 155 ANIKTMLAAVSIPEGWRFTGMYMVIFYAALVSLNPSVYEAAKVDGATELQILFKIKLPLI 214 Query: 217 KPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMAVF 276 K ++++++ M TGAL+GFDIP+L+T GG G +ELL TYMYK AFS+ +GYGSA+AVF Sbjct: 215 KNIILLTLTMCLTGALRGFDIPFLLTGGGAGNYSELLSTYMYKKAFSNNQYGYGSALAVF 274 Query: 277 IVVESLIAVAFIRRMMDSKE 296 I++ES++ V +R++ ++ Sbjct: 275 IIIESILVVIILRKIFAERK 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,576,552,663 Number of extensions: 62659621 Number of successful extensions: 230595 Number of sequences better than 1.0e-05: 6267 Number of HSP's gapped: 224724 Number of HSP's successfully gapped: 6276 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)