BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0011.p
         (57 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DC66.1 B1DC66_9BACL FAD linked oxidase domain protein               105   2e-21
B1HWA7.1 B1HWA7_LYSSC Reticuline oxidase EC=1.21.3.3                   79   2e-13
Q796Y5.4 YGAK_BACSU Uncharacterized FAD-linked oxidoreductase yg...    78   2e-13
C3HV21.1 C3HV21_BACTU FAD linked oxidase domain protein                77   5e-13
A7Z2P6.1 A7Z2P6_BACA2 YgaK                                             76   8e-13

>B1DC66.1 B1DC66_9BACL FAD linked oxidase domain protein
          Length = 459

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/54 (88%), Positives = 49/54 (90%)

Query: 4   KGDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIPVSKQVGK 57
           KGDYVNFPDLQIKNWPKAYYG NFGRLK+VKRKYDP NVF FAQSIPV KQV K
Sbjct: 406 KGDYVNFPDLQIKNWPKAYYGVNFGRLKRVKRKYDPQNVFRFAQSIPVGKQVRK 459


>B1HWA7.1 B1HWA7_LYSSC Reticuline oxidase EC=1.21.3.3
          Length = 456

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 38/46 (82%)

Query: 5   GDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           GDYVNFPD  I++WP AYYG NF RL++VK KYDP NVFHF QSIP
Sbjct: 405 GDYVNFPDRFIQDWPTAYYGRNFRRLREVKTKYDPFNVFHFPQSIP 450


>Q796Y5.4 YGAK_BACSU Uncharacterized FAD-linked oxidoreductase ygaK
           EC=1.-.-.-
          Length = 451

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 2   EFKGDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           E  GDYVN+PD++I+NWP+ YYGEN  RL++VK  YDP NVF F QSIP
Sbjct: 395 ETMGDYVNWPDIEIRNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIP 443


>C3HV21.1 C3HV21_BACTU FAD linked oxidase domain protein
          Length = 422

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query: 5   GDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           GDYVN+PD+ IKNW  +YYG NF RL++VK  YDP NVFHF QSIP
Sbjct: 373 GDYVNWPDIDIKNWETSYYGSNFHRLRKVKTMYDPCNVFHFQQSIP 418


>A7Z2P6.1 A7Z2P6_BACA2 YgaK
          Length = 455

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 38/49 (77%)

Query: 2   EFKGDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           E  GDYVN+PD +I+NW + YYGEN  RL+QVK KYDP N+F F QSIP
Sbjct: 399 ETMGDYVNWPDREIRNWLQTYYGENVHRLRQVKTKYDPENIFRFEQSIP 447


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 381,479,003
Number of extensions: 11858194
Number of successful extensions: 22063
Number of sequences better than 1.0e-05: 121
Number of HSP's gapped: 22157
Number of HSP's successfully gapped: 121
Length of query: 57
Length of database: 3,060,696,203
Length adjustment: 30
Effective length of query: 27
Effective length of database: 2,778,065,753
Effective search space: 75007775331
Effective search space used: 75007775331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)