BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0009.p (231 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9Y0.1 C0Z9Y0_BREBN Putative DNA-binding protein 326 8e-88 C0ZA12.1 C0ZA12_BREBN Putative DNA-binding protein 167 5e-40 B1DBG5.1 B1DBG5_9BACL Putative uncharacterized protein 166 1e-39 A7Z8S8.1 A7Z8S8_BACA2 Putative uncharacterized protein 162 1e-38 C2MH42.1 C2MH42_BACCE Putative uncharacterized protein 161 3e-38 >C0Z9Y0.1 C0Z9Y0_BREBN Putative DNA-binding protein Length = 280 Score = 326 bits (836), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 151/230 (65%), Positives = 189/230 (82%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPKAD 60 VA+LSGISLPWYTALEQGRDI VSEQVLESLVRTL+LS+DERNHL VLAN + P Sbjct: 45 VATLSGISLPWYTALEQGRDIQVSEQVLESLVRTLQLSHDERNHLFVLANSSVVPYVTVG 104 Query: 61 DSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFEVE 120 +S LQQILDRMG+YPAY+ID+ WNV AWNK++ TLCGD ++ E+ERNILWRVF ++ Sbjct: 105 ESNSPALQQILDRMGSYPAYVIDRHWNVTAWNKMTSTLCGDFNQIAEIERNILWRVFMMK 164 Query: 121 DSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVSGTM 180 ++++RIVNWE+VA+ ++AHFRSR+A YMNDSWY+E DKL ++SEEFR W R DVSGT Sbjct: 165 ETEARIVNWENVATMLLAHFRSRYALYMNDSWYREFVDKLCEQSEEFRVWWRRHDVSGTS 224 Query: 181 EGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTDEQLEALL 230 +GE++I P+AGLL+F YH+F + ES F MRV+TP+EN GTDEQL+ L+ Sbjct: 225 KGEKVIQHPKAGLLSFRYHSFALPESGDFVMRVYTPIENTGTDEQLKDLI 274 >C0ZA12.1 C0ZA12_BREBN Putative DNA-binding protein Length = 279 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 133/232 (57%), Gaps = 2/232 (0%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPKA- 59 +A ++GI L WYT LEQG+DI VS QVL+SLV ++L +ERNHL +LA+ LP + Sbjct: 45 LAQIAGIGLTWYTWLEQGKDIQVSTQVLDSLVTVMKLDTEERNHLFMLAHGQLPVEQTTS 104 Query: 60 -DDSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFE 118 + + +Q ++ PAY D+RW++L WNK + + GD + + ERN +WR F Sbjct: 105 FEAGITKIMQNFMNDFEMCPAYATDQRWDILMWNKAAQLVFGDFEKMNKKERNAVWRCFA 164 Query: 119 VEDSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVSG 178 D + + +WE A ++ FRS ++ + W++EL +L + S EFR W R D+ G Sbjct: 165 STDYRKLMGDWESHAKRLLGQFRSTSTPFVGEDWFKELVGELMELSPEFREWWPRYDIQG 224 Query: 179 TMEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTDEQLEALL 230 T G + I+ P AG +T + TF + ++ + ++ PL+ + +L L+ Sbjct: 225 TPIGTKQINHPTAGTMTMEHMTFRVYDAPELKLTIYRPLKENDSINKLNLLM 276 >B1DBG5.1 B1DBG5_9BACL Putative uncharacterized protein Length = 275 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 135/236 (57%), Gaps = 11/236 (4%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPKAD 60 VA LSG+S+ WYT LEQ R I VS QVL+ + R L+L DER HL +LA + +P P D Sbjct: 44 VAMLSGVSVDWYTWLEQARPIQVSAQVLDCISRALQLDADERKHLFLLAIQQVPADPSLD 103 Query: 61 -DSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFEV 119 + + LQ LDR GT PA+I D+R + AWNK + + G E ERN +WR F + Sbjct: 104 QNRISDNLQIFLDRQGTSPAFITDQRLIIRAWNKAADLIYGPFESMSERERNTVWRSFHL 163 Query: 120 EDSKSRIV-NWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVSG 178 + + NWE A +A FR+ +A++ D+W+ E+ D+L SEEFR W + DV Sbjct: 164 PGVRELLKENWEKHARHRLAQFRAGYAKFPGDAWWLEMIDELQRTSEEFREWWPQHDVLN 223 Query: 179 TMEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTDEQ----LEALL 230 EG+++ P AG L F+ +F +S+S F + V NL DEQ LE LL Sbjct: 224 GPEGKKVNYHPVAGTLEFNQLSFIVSDSPQFTVTV-----NLPADEQTVSKLEQLL 274 >A7Z8S8.1 A7Z8S8_BACA2 Putative uncharacterized protein Length = 283 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 139/232 (59%), Gaps = 2/232 (0%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPKAD 60 A L+GI + WYT LEQGRDI VS VLE++ R RL+ +E+ HL +LANR L + Sbjct: 45 AAQLAGIGVTWYTWLEQGRDIQVSSDVLEAISRVFRLNEEEKEHLFLLANRPLLSKVGRP 104 Query: 61 --DSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFE 118 +SV + L+ +L ++ P Y+ D++ N+++WNK + + GD ++ + +RN +WR F Sbjct: 105 LVESVNSVLKNVLSQLEYCPTYVTDEKLNIVSWNKAAAVVFGDFNKMNDRDRNAVWRCFT 164 Query: 119 VEDSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVSG 178 ++ + +NWED A ++A FR + +++ D W++++ +L ++S EFR W + +V G Sbjct: 165 SKEYRELFLNWEDHAQRLIAQFRLAYTRFVGDEWFKDIIKELTNKSPEFRNWWSKHEVLG 224 Query: 179 TMEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTDEQLEALL 230 T G++ + P G + + T + ++ + ++ P + T+++++ LL Sbjct: 225 TPCGKKTLLHPLVGEMIMDHITLQVYDAPELKLTIYQPRQEGETEQKMKHLL 276 >C2MH42.1 C2MH42_BACCE Putative uncharacterized protein Length = 281 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 128/219 (58%), Gaps = 3/219 (1%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQP--K 58 VA L+ I + WYT +EQGRDI VS Q LESL LRL +ER H+ +LA++ LPP+ K Sbjct: 45 VAQLANIGVTWYTWIEQGRDIQVSIQALESLADALRLDKEEREHMFLLAHQQLPPEKPLK 104 Query: 59 ADDSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFE 118 DD V LQ +D + YP Y+ D+ W+V+ WN+++ + GD ERN +WR F Sbjct: 105 TDDEVSPVLQNFIDDLKFYPIYVTDQLWDVVTWNRVASAVFGDFETMSFKERNAVWRCFA 164 Query: 119 VEDSKSRIVN-WEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVS 177 ++ ++ + N WE A ++A FR+ ++++ + W +E+ ++L S EF+ W DV Sbjct: 165 SQEYRTLLANDWEAHARRLLAQFRATCSRFVGEEWLKEVVEELMAISVEFQEWWPAHDVL 224 Query: 178 GTMEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTP 216 GT G++ I P G L F + TF + ++ + ++ P Sbjct: 225 GTPSGKKEIHHPIVGTLLFEHITFRVYDAPDLKLTMYRP 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,365,944,764 Number of extensions: 53578033 Number of successful extensions: 132117 Number of sequences better than 1.0e-05: 461 Number of HSP's gapped: 131504 Number of HSP's successfully gapped: 461 Length of query: 231 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 100 Effective length of database: 1,826,543,238 Effective search space: 182654323800 Effective search space used: 182654323800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)