BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0007.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBT5.1 B3KBT5_9BACI Transcriptional regulator, TetR family          232   8e-60
C3E973.1 C3E973_BACTU Transcriptional regulator, TetR                 160   4e-38
B7IIZ7.1 B7IIZ7_BACC2 Transcriptional regulator, TetR family          160   5e-38
Q817N8.1 Q817N8_BACCR Transcriptional regulator, TetR family          159   5e-38
Q81LA5.1 Q81LA5_BACAN Transcriptional regulator, TetR family          159   6e-38

>B3KBT5.1 B3KBT5_9BACI Transcriptional regulator, TetR family
          Length = 212

 Score =  232 bits (592), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/122 (90%), Positives = 116/122 (95%)

Query: 1   MCAVYISDLFLQDLKEFYPHHFENLSVALHNRNKNLQAFFESGMEQQIFNRLNAVLFMVQ 60
           MCA YISDLFLQDLKEFYPHHFENLSVAL NRNK+LQ FFESGMEQQIFNRLNAVLFMVQ
Sbjct: 91  MCAAYISDLFLQDLKEFYPHHFENLSVALQNRNKSLQTFFESGMEQQIFNRLNAVLFMVQ 150

Query: 61  DDAVLRRFIEPSFSIQYDITLKQAIMDYYHMKQYQLLKPEYLKMIDYSNMEGKIVHILQT 120
           DDAVLRRFIEPSFSIQYDIT+KQAIMD+Y+MKQYQLLKPEYLKMID S+ME KIVHILQ 
Sbjct: 151 DDAVLRRFIEPSFSIQYDITVKQAIMDFYYMKQYQLLKPEYLKMIDDSDMERKIVHILQA 210

Query: 121 IS 122
           IS
Sbjct: 211 IS 212


>C3E973.1 C3E973_BACTU Transcriptional regulator, TetR
          Length = 187

 Score =  160 bits (405), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 95/121 (78%)

Query: 2   CAVYISDLFLQDLKEFYPHHFENLSVALHNRNKNLQAFFESGMEQQIFNRLNAVLFMVQD 61
           C  YISD+FLQDLKE YPH  + L  A  NRN NLQ FFE+GMEQ  FN++NA LFMVQD
Sbjct: 67  CVTYISDVFLQDLKEAYPHLSDQLVAAQQNRNHNLQMFFEAGMEQGYFNKMNAQLFMVQD 126

Query: 62  DAVLRRFIEPSFSIQYDITLKQAIMDYYHMKQYQLLKPEYLKMIDYSNMEGKIVHILQTI 121
           D +LRR I+ SF IQYDITLK+AI+D+Y +K+YQL KPEY+++ID S +E +++ ILQ I
Sbjct: 127 DVMLRRIIDHSFCIQYDITLKKAILDFYQLKKYQLFKPEYIEVIDDSEIEKEVIAILQMI 186

Query: 122 S 122
           S
Sbjct: 187 S 187


>B7IIZ7.1 B7IIZ7_BACC2 Transcriptional regulator, TetR family
          Length = 212

 Score =  160 bits (404), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 94/121 (77%)

Query: 2   CAVYISDLFLQDLKEFYPHHFENLSVALHNRNKNLQAFFESGMEQQIFNRLNAVLFMVQD 61
           C  YISD+FLQDLKE YPH  + L  A  NRN NLQ FFE+GMEQ  FN++NA LFMVQD
Sbjct: 92  CVTYISDVFLQDLKEAYPHLSDQLVAAQQNRNHNLQMFFEAGMEQGYFNKMNAQLFMVQD 151

Query: 62  DAVLRRFIEPSFSIQYDITLKQAIMDYYHMKQYQLLKPEYLKMIDYSNMEGKIVHILQTI 121
           D +LRR I+ SF IQYDITLK+AI+D+Y +K+YQL KPEY++ ID S +E +++ ILQ I
Sbjct: 152 DVMLRRIIDHSFCIQYDITLKKAILDFYQLKKYQLFKPEYIEAIDDSEIEKEVIAILQMI 211

Query: 122 S 122
           S
Sbjct: 212 S 212


>Q817N8.1 Q817N8_BACCR Transcriptional regulator, TetR family
          Length = 212

 Score =  159 bits (403), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 94/121 (77%)

Query: 2   CAVYISDLFLQDLKEFYPHHFENLSVALHNRNKNLQAFFESGMEQQIFNRLNAVLFMVQD 61
           C  YISD+FLQDLKE YPH  + L  A  NRN NLQ FFE+GMEQ  FN++NA LFMVQD
Sbjct: 92  CVTYISDVFLQDLKEAYPHLSDQLVAAQQNRNHNLQMFFEAGMEQGYFNKMNAQLFMVQD 151

Query: 62  DAVLRRFIEPSFSIQYDITLKQAIMDYYHMKQYQLLKPEYLKMIDYSNMEGKIVHILQTI 121
           D +LRR I+ SF IQYDITLK+AI+D+Y +K+YQL KPEY++ ID S +E +++ ILQ I
Sbjct: 152 DVMLRRIIDHSFCIQYDITLKKAILDFYQLKKYQLFKPEYIEAIDDSEIEKEVIAILQMI 211

Query: 122 S 122
           S
Sbjct: 212 S 212


>Q81LA5.1 Q81LA5_BACAN Transcriptional regulator, TetR family
          Length = 212

 Score =  159 bits (403), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 94/121 (77%)

Query: 2   CAVYISDLFLQDLKEFYPHHFENLSVALHNRNKNLQAFFESGMEQQIFNRLNAVLFMVQD 61
           C  YISD+FLQDLKE YPH  + L  A  NRN NLQ FFE+GMEQ  FN++NA LFMVQD
Sbjct: 92  CVTYISDVFLQDLKEAYPHLSDQLVAAQQNRNHNLQIFFEAGMEQGYFNKMNAQLFMVQD 151

Query: 62  DAVLRRFIEPSFSIQYDITLKQAIMDYYHMKQYQLLKPEYLKMIDYSNMEGKIVHILQTI 121
           D +LRR I+ SF IQYDITLK+AI+D+Y +K+YQL KPEY++ ID S +E +++ ILQ I
Sbjct: 152 DVMLRRIIDHSFCIQYDITLKKAILDFYQLKKYQLFKPEYIEAIDDSEIEKEVIAILQMI 211

Query: 122 S 122
           S
Sbjct: 212 S 212


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 667,076,711
Number of extensions: 23248118
Number of successful extensions: 78480
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 78479
Number of HSP's successfully gapped: 59
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)