BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0003.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9AUL2.1 A9AUL2_HERA2 Putative uncharacterized protein 222 2e-56 B1D9X7.1 B1D9X7_9BACL Putative uncharacterized protein 199 2e-49 C1D3W7.1 C1D3W7_DEIDV Putative uncharacterized protein 177 7e-43 B5HH70.1 B5HH70_STRPR Putative uncharacterized protein 143 1e-32 C0UDT4.1 C0UDT4_9ACTO Putative uncharacterized protein 132 3e-29 >A9AUL2.1 A9AUL2_HERA2 Putative uncharacterized protein Length = 321 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 166/239 (69%), Gaps = 3/239 (1%) Query: 1 MTRDRRNARILGIFYILAAVTSIIAVVLYGPVLSEQWQMAVANGSETKVLIGVLNDLSLM 60 M RRNA ++GI++ILAAVTSI+ +++YGP+L++ + + +++ L +L L+ Sbjct: 82 MQNQRRNAILIGIYFILAAVTSIVGLIMYGPLLNQSDYLVAGAANGNQIVFAALMELGLV 141 Query: 61 VTAVGTAVMLFPYVRHWNEHLALGYLCFRFMEAVFIAIGLVSILGLLQLSSYYDTTNLAS 120 VTAVGTAV +FP +R ++E +AL +LCFRF+EAV I IG+VS+L LL LS + + Sbjct: 142 VTAVGTAVTMFPILRQYSERMALAHLCFRFLEAVVITIGIVSMLALLTLSREFSSATAPD 201 Query: 121 KTNFEPIGLLLQSIYRWTAMLGPNFMLGINTSLYSYLLYRTGYVPKPLAVFGMITAVMVF 180 + ++ +G L +I+ WT ++GPNFMLG+NT +YSY+ YRT +P+P+A+ G+I + VF Sbjct: 202 EQSYRVVGTALIAIHDWTFIIGPNFMLGLNTIMYSYIFYRTRLIPRPIAIIGLIGSNTVF 261 Query: 181 LAGLLQMFGIIGPYSAVKGLMALPVGVYEMSLAVWLIVKGFHGENLAKLRAKTASSSLV 239 LA LL++FG+I S ++A+PV + EMSLA+WLI+KGF+ K +++SS V Sbjct: 262 LAALLELFGVIEQLSTWGAILAIPVALTEMSLAIWLIIKGFNANPTIK---QSSSSQFV 317 >B1D9X7.1 B1D9X7_9BACL Putative uncharacterized protein Length = 226 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 100/224 (44%), Positives = 151/224 (67%), Gaps = 4/224 (1%) Query: 1 MTRDRRNARILGIFYILAAVTSIIAVVLYGPVLSEQWQMAVANGSE--TKVLIGVLNDLS 58 M + ++ G +ILAAV+S++ ++ YGP+L+ + NGSE ++++G L +L Sbjct: 1 MISITKTPKVTGTLFILAAVSSVLGLLFYGPILNHANYLT--NGSEHADQIILGALMELI 58 Query: 59 LMVTAVGTAVMLFPYVRHWNEHLALGYLCFRFMEAVFIAIGLVSILGLLQLSSYYDTTNL 118 L+ +AVGTAV ++P+++ +NE +ALG++CFR +EAV I +GLV +L L+ LS Y + Sbjct: 59 LVASAVGTAVTMYPFLKKYNESIALGHVCFRLLEAVVITVGLVGMLSLVTLSRQYVSAGA 118 Query: 119 ASKTNFEPIGLLLQSIYRWTAMLGPNFMLGINTSLYSYLLYRTGYVPKPLAVFGMITAVM 178 ++E G L +++ WT MLGPNF+LGINT LYSY+ Y++G VP+ + + GM AV+ Sbjct: 119 PDPASYEAAGTLFLAVHDWTFMLGPNFLLGINTMLYSYIFYKSGLVPRFIPILGMTGAVL 178 Query: 179 VFLAGLLQMFGIIGPYSAVKGLMALPVGVYEMSLAVWLIVKGFH 222 VF A L +MFG+ S GL++LPV EM LAVWLIVKGF+ Sbjct: 179 VFSASLFEMFGVFSQLSVWGGLLSLPVAANEMILAVWLIVKGFN 222 >C1D3W7.1 C1D3W7_DEIDV Putative uncharacterized protein Length = 419 Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 92/236 (38%), Positives = 147/236 (62%) Query: 1 MTRDRRNARILGIFYILAAVTSIIAVVLYGPVLSEQWQMAVANGSETKVLIGVLNDLSLM 60 MT + +ARI G+ +ILA V++++ V+LY P+L++ + +V++G L +L L Sbjct: 168 MTSSKMDARITGVLFILATVSAVLGVLLYAPLLNDPDFLRSGQSHTHRVILGALFELILA 227 Query: 61 VTAVGTAVMLFPYVRHWNEHLALGYLCFRFMEAVFIAIGLVSILGLLQLSSYYDTTNLAS 120 AVGTA+ LFPYV+ NE LALGY+ FR +EA I +G++S+L L L + + Sbjct: 228 SAAVGTAITLFPYVKRQNESLALGYVSFRVLEATLIIVGVLSMLSYLTLRNQFMAAPAPH 287 Query: 121 KTNFEPIGLLLQSIYRWTAMLGPNFMLGINTSLYSYLLYRTGYVPKPLAVFGMITAVMVF 180 +F+ +G LL +++ WT +LGPNFMLGINT + ++LL+++ VP+ +A G++ ++ Sbjct: 288 LPSFQTVGGLLLALHEWTFLLGPNFMLGINTLMCAFLLHQSRLVPRGIATLGLVGGALIL 347 Query: 181 LAGLLQMFGIIGPYSAVKGLMALPVGVYEMSLAVWLIVKGFHGENLAKLRAKTASS 236 A +L++FG++ S +ALPV YEM LA WLI KGF + L + +S Sbjct: 348 TAAVLELFGVVRQLSPWGVALALPVAAYEMILAGWLITKGFRPTAIHHLESGPQAS 403 >B5HH70.1 B5HH70_STRPR Putative uncharacterized protein Length = 241 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MTRDRRNARILGIFYILAAVTSIIAVVLYGPVLSEQWQMAVANGSETKVLIGVLNDLSLM 60 M RR A + G+ +++ V ++ + LYGPVL + + V G++T+V +G L ++ L Sbjct: 1 MVPTRRTAVVAGVLFLVTEVAAMGGLALYGPVLHDAGYV-VGPGADTRVFLGALCEIVLA 59 Query: 61 VTAVGTAVMLFPYVRHWNEHLALGYLCFRFMEAVFIAIGLVSILGLLQLSSYYDTTNLAS 120 VGT V+LFP ++ NE ALGY+C R +EA I +G+VS+L ++ L D Sbjct: 60 AAVVGTGVVLFPVLKKQNEGAALGYVCARLLEAAVIIVGIVSVLSVVTLRRGSDGAAAGD 119 Query: 121 KTNFEPIGLLLQSIYRWTAMLGPNFMLGINTSLYSYLLYRTGYVPKPLAVFGMITAVMVF 180 + G L +++ WT ++GPN +LG N+ + ++L+YR G VP+ + V G+ ++ Sbjct: 120 TASLVTAGRTLVAVHDWTFLMGPNVILGANSLVLAWLMYRAGLVPRFIGVLGLAGGALIC 179 Query: 181 LAGLLQMFGIIGPYSAVKGLMALPVGVYEMSLAVWLIVKGFH 222 + MFG+ S + A+PV +E+ LAV LI KGF Sbjct: 180 ASATGVMFGLYEQVSVPGAVAAVPVFAWEVGLAVRLITKGFE 221 >C0UDT4.1 C0UDT4_9ACTO Putative uncharacterized protein Length = 241 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 2/239 (0%) Query: 1 MTRDRRNARILGIFYILAAVTSIIAVVLY-GPVLSEQWQMAVANGSETKVLIGVLNDLSL 59 M R R+ A + G Y++ SI A + PVLS+ + V +G++T+VL+G L D+ Sbjct: 1 MDRLRKTAMLAGGLYLVTFAASIPARFFFLDPVLSDSGYI-VGSGADTRVLVGGLLDMVN 59 Query: 60 MVTAVGTAVMLFPYVRHWNEHLALGYLCFRFMEAVFIAIGLVSILGLLQLSSYYDTTNLA 119 + + TAV+LF V+ ++ LALG++ R +EA I+IG+VS+ ++ L T A Sbjct: 60 ALACIATAVVLFTVVKRQSQTLALGFVASRLLEAAIISIGVVSLFAVVTLRQDLAGTAGA 119 Query: 120 SKTNFEPIGLLLQSIYRWTAMLGPNFMLGINTSLYSYLLYRTGYVPKPLAVFGMITAVMV 179 + + P+G L ++Y WT + GPN + +N L L+YR+G VP+ + + G+I A ++ Sbjct: 120 DEASLVPVGAALVAVYEWTFLFGPNVLAAVNALLLGTLMYRSGLVPRAIPLMGLIGAPLL 179 Query: 180 FLAGLLQMFGIIGPYSAVKGLMALPVGVYEMSLAVWLIVKGFHGENLAKLRAKTASSSL 238 + L +FG + + A P+ ++E+SL V+L VKGF+ +A L + S L Sbjct: 180 LASVLGVVFGTHDLAAGQHVIAAAPIALWELSLGVYLTVKGFNPAAVAALTSTDRDSEL 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,319,381,702 Number of extensions: 51431598 Number of successful extensions: 238061 Number of sequences better than 1.0e-05: 26 Number of HSP's gapped: 238035 Number of HSP's successfully gapped: 26 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)