BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0027.p (467 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0AF78.1 A0AF78_LISW6 XylP protein 374 e-102 Q03HN3.1 Q03HN3_PEDPA Na+/xyloside symporter related transporter 371 e-101 P96792.2 XYLP_LACPE Putative xylose-proton symporter 366 3e-99 Q03HQ9.1 Q03HQ9_PEDPA Na+/xyloside symporter related transporter 359 4e-97 B1LFV2.1 B1LFV2_ECOSM Xylose-proton symporter 340 2e-91 >A0AF78.1 A0AF78_LISW6 XylP protein Length = 462 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/441 (43%), Positives = 288/441 (65%), Gaps = 6/441 (1%) Query: 24 IPLLEKISYGLGDTGSNLIYTVITTYLTFYFTDIYGIGAAAVGTLMLIARLVDMIDSPIL 83 +P E+ISYGL DT NL + VI TYL F++TD+YGI AAAVGTL L+AR++D D PI+ Sbjct: 17 VPWKERISYGLSDTACNLAFQVIGTYLMFFYTDVYGISAAAVGTLFLVARVIDAFDGPII 76 Query: 84 GILIDKTNTRWGKSRPWILWSCIPFSIVSILLFMGPELSASGKMAYAYIFYIAANVLYAA 143 GI ID+T+T+WGKSRP+ LW IPF ++ +L F P+L+ GK+ +AY+ YI + Y+ Sbjct: 77 GIFIDRTHTKWGKSRPFFLWFSIPFGLMCVLTFTTPDLTDGGKIVWAYVTYILVGIFYSC 136 Query: 144 VNNPLQTMLPSMTSNIQEKTVANTFRMFGGQIGGLIVNLTLLPLVAYLGAGDDRKGFFYA 203 VN P+ ++LPS+T+N +E+TV T R FGG IG +IV + LP+VA LG+GD +KGFF Sbjct: 137 VNLPITSILPSLTNNPKERTVLGTIRQFGGTIGQIIVTVFTLPIVALLGSGDQQKGFFLT 196 Query: 204 MIIFSLTALVLFFITFFNTRERVQGVSGNEAIPVKEGIKAIKGNLPWIGICLFGITMYTM 263 +++FS+ A+VL TF NT+ER+ V + + VK+ +KA+K N PW+ + L + Sbjct: 197 ILLFSIVAVVLLLNTFVNTKERITNV--QKVVRVKDSVKAMKRNWPWMIMILMNFIYWMA 254 Query: 264 FIMRLSAAIYYMTYYIEKPEIISTVNTIAMSSLLGILAVPFLTKKFSKKSLVITGLAINI 323 M+ +Y+ Y + + +++ + +A SLL +L P + + K++ ++ GL + I Sbjct: 255 MTMKNQTTVYFFKYNLGREDLVPIIMALAFGSLLTLLFTPAVANRMGKRNTMVMGLVLAI 314 Query: 324 VGQLIIFMAGSN--VALIIIGTIVGSVGMGLPSGLLFVLKADTVDYGEWKSGVRAPGXXX 381 +GQ+I+ + N +++II G ++ + G G SGLL V+ ADTVDYGEWK+GVRA G Sbjct: 315 IGQIIMGIGAHNLSISIIIFGVVINAFGTGFISGLLSVMLADTVDYGEWKNGVRAQG-LL 373 Query: 382 XSASGVANKLGSGLGSAIPVWLLAAGGYVAKQQQTPEALRMIALSYIWLPVILGAVAILV 441 SAS K G G+G A+ +LA GGY A + QT E+LR I +++W+P+I G V + Sbjct: 374 TSASSFGAKFGMGIGGAMTAGILAMGGYQANKTQTAESLRAIEFNFVWIPII-GFVIAAI 432 Query: 442 MVFVYKWEKPHAEIVAELEAR 462 +F Y+ +K + + ELE R Sbjct: 433 ALFFYRADKQEKQYLVELEER 453 >Q03HN3.1 Q03HN3_PEDPA Na+/xyloside symporter related transporter Length = 461 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/457 (42%), Positives = 291/457 (63%), Gaps = 10/457 (2%) Query: 16 QTMNSNQKIPLLEKISYGLGDTGSNLIYTVITTYLTFYFTDIYGIGAAAVGTLMLIARLV 75 + ++++ + E+ISY + D NL + +I TYL F++TD++GI AAAVGTL L+AR+V Sbjct: 7 EPVHTHNLVSWKERISYAVSDFACNLSFQMIGTYLMFFYTDVFGITAAAVGTLFLVARIV 66 Query: 76 DMIDSPILGILIDKTNTRWGKSRPWILWSCIPFSIVSILLFMGPELSASGKMAYAYIFYI 135 D ID P+ G+LID T+TRWGKSRP+ LW IPF+I +L F P LS GK+ +AYI YI Sbjct: 67 DAIDGPVWGLLIDHTHTRWGKSRPFFLWFAIPFAIFCVLCFTTPNLSMGGKVVWAYITYI 126 Query: 136 AANVLYAAVNNPLQTMLPSMTSNIQEKTVANTFRMFGGQIGGLIVNLTLLPLVAYLGAGD 195 +VLY+AVN P+ ++LPS+T++ E+ +T R F G G IV + LP+V + G G+ Sbjct: 127 GVDVLYSAVNIPITSILPSLTNDTDERVTLSTIRQFFGTAGATIVTVAALPMVNFFGGGN 186 Query: 196 DRKGFFYAMIIFSLTALVLFFITFFNTRERVQGVSGNEAIPVKEGIKAIKGNLPWIGICL 255 +KGFF +++I ++ + +L ITF NTRER+Q S ++IPVK+ +KA+K N PW I Sbjct: 187 QQKGFFISVLILAIISAILLLITFANTRERIQTKSSRKSIPVKQSLKALKKNWPWAIIIF 246 Query: 256 FGITMYTMFIMRLSAAIYYMTYYIEKPEIISTVNTIAMSSLLGILAVPFLTKKFSKKSLV 315 + + +Y+ Y + + S V + + +LL ++ P + KK K++ + Sbjct: 247 INFIYWLGMQTKSQVTVYFFKYNMHNAGLASLVLGLQIVALLAVVITPAVAKKIGKRNTM 306 Query: 316 ITGLAINIVGQLIIFMAGS--NVALIIIGTIVGSVGMGLPSGLLFVLKADTVDYGEWKSG 373 + G+ + IVGQLI+ + S NVA+II+ T+VG +G G SGL+ V+ AD+VDYGEWK+G Sbjct: 307 LMGMFLAIVGQLILSIGASQLNVAIIIVATLVGYLGTGFVSGLIAVMLADSVDYGEWKNG 366 Query: 374 VRAPGXXXXSASGVANKLGSGLGSAIPVWLLAAGGYVAKQQQTPEALRMIALSYIWLPVI 433 VRA G S S + KLG G+G A+ +L+AGGYVA QT ALR I +YIW+P+I Sbjct: 367 VRAEG-IVTSFSSFSAKLGMGIGGAVTGMILSAGGYVANATQTATALRAIEQNYIWVPII 425 Query: 434 ---LGAVAILVMVFVYKWEKPHAEIVAELEARRISKN 467 L A+A+L YK + ++ A+L A+ +N Sbjct: 426 GFGLSAIALL----FYKVDGVEDKMQADLAAKHQKEN 458 >P96792.2 XYLP_LACPE Putative xylose-proton symporter Length = 479 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 189/452 (41%), Positives = 286/452 (63%), Gaps = 14/452 (3%) Query: 24 IPLLEKISYGLGDTGSNLIYTVITTYLTFYFTDIYGIGAAAVGTLMLIARLVDMIDSPIL 83 +P E+ SY L D NL +++++TYL F++TD++GI AA VGTL L+AR+VD D P Sbjct: 27 VPWSERFSYSLSDFACNLSFSLVSTYLMFFYTDVFGISAAIVGTLFLVARIVDAFDGPFW 86 Query: 84 GILIDKTNTRWGKSRPWILWSCIPFSIVSILLFMGPELSASGKMAYAYIFYIAANVLYAA 143 GI+ID T+TRWGKSRP+ LW IPF++ S+L F P +S K+ +AY+ YI +VLY+A Sbjct: 87 GIMIDHTHTRWGKSRPYWLWFAIPFAVFSVLCFTVPNMSTGMKVVWAYVTYIGVDVLYSA 146 Query: 144 VNNPLQTMLPSMTSNIQEKTVANTFRMFGGQIGGLIVNLTLLPLVAYLGAG--DDRKGFF 201 VN P+ ++LPS+TSN QE+ +T R F G +G I++ LPLVAY G G G+F Sbjct: 147 VNIPITSILPSLTSNPQERVTLSTIRQFMGTLGATIISTIALPLVAYFGGGSTSSAHGWF 206 Query: 202 YAMIIFSLTALVLFFITFFNTRERVQGVSGNEAIPVKEGIKAIKGNLPWIGICLFGITMY 261 +I ++ A+V+FFI F NT+ERVQ V ++IP+K +KA+K N PW+ + + Sbjct: 207 MVALIMAVIAMVIFFIVFANTKERVQTVQSKKSIPIKTSLKALKRNWPWVIVIFINFIYW 266 Query: 262 TMFIMRLSAAIYYMTYYIEKPEIISTVNTIAMSSLLGILAVPFLTKKFSKKSLVITGLAI 321 R +Y+ Y + + S + + + +LL ++ P+ K+ K++ ++ G+ + Sbjct: 267 LGMQTRSQVTVYFFKYNMHDATLASFILGLQLVALLAVVITPWTAKRIGKRNTMLMGMLL 326 Query: 322 NIVGQLIIFMAGS---NVALIIIGTIVGSVGMGLPSGLLFVLKADTVDYGEWKSGVRAPG 378 IVGQLI++ GS NV I +GTIVG +G G SGL+ V+ AD+VDYGEWK+GVRA G Sbjct: 327 AIVGQLILW-GGSKALNVPTITVGTIVGYLGTGFVSGLIAVMLADSVDYGEWKNGVRAEG 385 Query: 379 XXXXSASGVANKLGSGLGSAIPVWLLAAGGYVAKQQQTPEALRMIALSYIWLPVI---LG 435 S S + K G G+G A+ +L+AGGYVA Q+ +AL I ++Y+W+P++ L Sbjct: 386 -IVTSFSSFSAKFGMGIGGAVTGLILSAGGYVANHAQSAQALNAIEMNYVWVPIVGFGLS 444 Query: 436 AVAILVMVFVYKWEKPHAEIVAELEARRISKN 467 A+A+L YK +K +++A+LE + +N Sbjct: 445 AIALL----FYKVDKIEPKMLADLEQKHAQEN 472 >Q03HQ9.1 Q03HQ9_PEDPA Na+/xyloside symporter related transporter Length = 448 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 276/448 (61%), Gaps = 3/448 (0%) Query: 19 NSNQKIPLLEKISYGLGDTGSNLIYTVITTYLTFYFTDIYGIGAAAVGTLMLIARLVDMI 78 N + K+P LEK+SY D NL+Y I++Y+ +++TD++ I A G ++LIAR+VD I Sbjct: 3 NKSDKLPFLEKVSYSFTDMAGNLLYVTISSYILYFYTDVFKISVAGAGLILLIARVVDAI 62 Query: 79 DSPILGILIDKTNTRWGKSRPWILWSCIPFSIVSILLFMGPELSASGKMAYAYIFYI-AA 137 +P+ G ++D T+TRWG+SRP+ LW IPF+I + L F P LS K+ YA I YI AA Sbjct: 63 SAPVWGSIVDHTHTRWGQSRPYFLWLAIPFAIATFLAFTAPNLSGDAKLWYAGITYILAA 122 Query: 138 NVLYAAVNNPLQTMLPSMTSNIQEKTVANTFRMFGGQIGGLIVNLTLLPLVAYLGAGDDR 197 V+Y + P+ ++LPS+T++ E+ ANTFRM GG IG I + LPLVA+LG G+D+ Sbjct: 123 GVIYTGIQTPITSILPSLTADTDERISANTFRMAGGNIGAFITSTFCLPLVAFLGQGNDK 182 Query: 198 KGFFYAMIIFSLTALVLFFITFFNTRERVQGVSGNEAIPVKEGIKAIKGNLPWIGICLFG 257 GF + IF A++L F+ F N RER ++IP K+ +KA GN PW + + Sbjct: 183 HGFMLTLGIFGTLAVILLFLAFRNLRERKD--VEVKSIPFKDSLKATVGNKPWFILVISF 240 Query: 258 ITMYTMFIMRLSAAIYYMTYYIEKPEIISTVNTIAMSSLLGILAVPFLTKKFSKKSLVIT 317 + + R ++YY Y + ++ S N + + ++ +++PF+ K +K ++ Sbjct: 241 VIYWIAQADRNGISVYYAKYNLGNEQLTSVFNGLQVLGIIATISIPFVVKVTNKTMTMLI 300 Query: 318 GLAINIVGQLIIFMAGSNVALIIIGTIVGSVGMGLPSGLLFVLKADTVDYGEWKSGVRAP 377 GLAI GQ ++ AGSN AL+I+ ++G G L + F + ADTVD+GEWK+G+RA Sbjct: 301 GLAIGAFGQAMMAFAGSNFALVIVAWVIGIFGAALACAMPFAMLADTVDFGEWKTGIRAS 360 Query: 378 GXXXXSASGVANKLGSGLGSAIPVWLLAAGGYVAKQQQTPEALRMIALSYIWLPVILGAV 437 G S +LGSG GS IP ++AA G+VA Q+QT E+L I +IWLP+I+ + Sbjct: 361 GFLTAVGSAFCIQLGSGFGSFIPSKIMAAAGFVANQKQTAESLASIKFCFIWLPIIVYII 420 Query: 438 AILVMVFVYKWEKPHAEIVAELEARRIS 465 + ++M+F +K+EK +I EL+ R IS Sbjct: 421 SGIIMLFYFKYEKMEPQIKKELQNRHIS 448 >B1LFV2.1 B1LFV2_ECOSM Xylose-proton symporter Length = 457 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 281/446 (63%), Gaps = 1/446 (0%) Query: 19 NSNQKIPLLEKISYGLGDTGSNLIYTVITTYLTFYFTDIYGIGAAAVGTLMLIARLVDMI 78 S+ +PL+++ISYG D NL+Y +TY+ +++TD+ GI A G ++L+AR+VD I Sbjct: 11 TSSDSLPLIQRISYGSLDVAGNLLYCFGSTYILYFYTDVAGISLAVAGIILLLARIVDGI 70 Query: 79 DSPILGILIDKTNTRWGKSRPWILWSCIPFSIVSILLFMGPELSASGKMAYAYIFYIAAN 138 D+P+ GI+IDKT++R+GK RPW LW +PF++ S L F P++S +GK YA I Y+ A+ Sbjct: 71 DAPVWGIIIDKTHSRYGKCRPWFLWLPLPFAVFSALSFWSPDISMTGKAVYAAISYMLAS 130 Query: 139 VLYAAVNNPLQTMLPSMTSNIQEKTVANTFRMFGGQIGGLIVNLTLLPLVAYLGAGDDRK 198 +L+ +N PL +LP MT + +E+ V N++RM GGQIG L++N T LPLVA+LG G+D+ Sbjct: 131 ILFTGLNTPLSAILPLMTLSPKERLVLNSYRMTGGQIGVLLMNATALPLVAFLGNGNDKA 190 Query: 199 GFFYAMIIFSLTALVLFFITFFNTRE-RVQGVSGNEAIPVKEGIKAIKGNLPWIGICLFG 257 GF Y I+F++ + L F N RE + +P+K+ A+KGN PW+ + + Sbjct: 191 GFIYTAIVFAVISCALTLFAFKNIRELDTDKIQQEPRLPMKKSFSAMKGNWPWLLMVVAN 250 Query: 258 ITMYTMFIMRLSAAIYYMTYYIEKPEIISTVNTIAMSSLLGILAVPFLTKKFSKKSLVIT 317 + + R + +YY+TY +++ +++ VN++A +L I+A+PF ++ +K + IT Sbjct: 251 LIFWIALQQRNTTIVYYLTYNLDRKDLVPLVNSLATIQILFIIAIPFFSRYLTKTWIWIT 310 Query: 318 GLAINIVGQLIIFMAGSNVALIIIGTIVGSVGMGLPSGLLFVLKADTVDYGEWKSGVRAP 377 GL + ++G ++++A ++ L+I ++ ++G G+ + F + VD+G WK+G++A Sbjct: 311 GLLVAMLGGGLMWLAADSIPLMIAAWVLANIGSGIACSMPFAMLGFAVDFGRWKTGIKAT 370 Query: 378 GXXXXSASGVANKLGSGLGSAIPVWLLAAGGYVAKQQQTPEALRMIALSYIWLPVILGAV 437 G S K+GSG+G+A +++ + GY+ QQQT L I+L++IW+P +L A+ Sbjct: 371 GILIAFGSTFCIKMGSGIGTAFAAFIMDSFGYIPNQQQTAAGLEGISLAFIWVPALLFAL 430 Query: 438 AILVMVFVYKWEKPHAEIVAELEARR 463 A + ++F ++E I +L+A Sbjct: 431 AAVPLLFFRQYEAMEGRIQHDLQAHN 456 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,679,191,368 Number of extensions: 113023517 Number of successful extensions: 475765 Number of sequences better than 1.0e-05: 1383 Number of HSP's gapped: 471909 Number of HSP's successfully gapped: 1409 Length of query: 467 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 328 Effective length of database: 1,751,175,118 Effective search space: 574385438704 Effective search space used: 574385438704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)