BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0026.p (217 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I484.1 B8I484_CLOCE Transcriptional regulator, GntR family 106 1e-21 B9LIP0.1 B9LIP0_CHLSY Transcriptional regulator, GntR family 106 2e-21 A9WGE4.1 A9WGE4_CHLAA GntR domain protein 106 2e-21 Q1IC75.1 Q1IC75_PSEE4 Putative transcriptional regulator, GntR f... 106 2e-21 B0K475.1 B0K475_THEPX Transcriptional regulator, GntR family 103 1e-20 >B8I484.1 B8I484_CLOCE Transcriptional regulator, GntR family Length = 223 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 8/200 (4%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYR-TS 67 ++L V+ +LR+ I+ G ++P +I+ +L+E LGVSRTP+R+A+ +LE+EGL+ + Sbjct: 14 NSLRGRVFNKLRKQILTGAYKPGDSLIELRLSEELGVSRTPIREAIRQLELEGLVTSIPN 73 Query: 68 KGWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAI--FQSAYQKRQDQD 125 KG K T D+ +F +R ++EGLA R A I EE+I+ ++ F+ + + D + Sbjct: 74 KGAVVKGVTDQDVEDIFTIRTMIEGLAARWAAEKITEEEIVELKEALEFEEFFTIKNDAE 133 Query: 126 KDAYYLADKKFHNLIASEIQDFHLSKSLESF-KVIQTSLTQGLYRS--PDETYPEHMAII 182 Y D +FH++I + L L +F IQ + P + EH AI Sbjct: 134 HLMKY--DSRFHDIIFRACKSRPLMHMLSTFHHYIQNARNNSFETPGRPAKALDEHRAIF 191 Query: 183 DAIEKRDGDLAEELMRNHIR 202 +AI ++DG+ AE+L HIR Sbjct: 192 EAISRKDGETAEKLTVEHIR 211 >B9LIP0.1 B9LIP0_CHLSY Transcriptional regulator, GntR family Length = 233 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 112/214 (52%), Gaps = 16/214 (7%) Query: 1 MNNLGIVKDTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEME 60 MN L +T VY RLR ++I G + P +I+ +L + LGVSRTP+R+A+ E Sbjct: 1 MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAE 60 Query: 61 GLL-YRTSKGWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMR----AIFQ 115 GL+ ++G A+SFT+DD+I +++LRA+LEG A L A I E++ M A+ Q Sbjct: 61 GLVQIFPNRGAVARSFTVDDLIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQ 120 Query: 116 S---AYQKRQDQDKDAYYLADKK--FHNLIASEIQDFHLSKSLESFKVIQTSLTQGLYRS 170 S +++RQD + ++L + FH IA + L L + + Sbjct: 121 SLTLTFERRQD---EVHFLVEHNAVFHQTIAEAAGNQRLITMLNQIVAVPLQFRSFYWYQ 177 Query: 171 PDETYPE---HMAIIDAIEKRDGDLAEELMRNHI 201 PD+ H +I++A+ DGD A +MR HI Sbjct: 178 PDQRQISNFFHRSILNALRLGDGDRARAMMREHI 211 >A9WGE4.1 A9WGE4_CHLAA GntR domain protein Length = 233 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 112/214 (52%), Gaps = 16/214 (7%) Query: 1 MNNLGIVKDTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEME 60 MN L +T VY RLR ++I G + P +I+ +L + LGVSRTP+R+A+ E Sbjct: 1 MNKLYTTDETSADQVYQRLRRLLIEGHYPPGSRLIEERLAQDLGVSRTPVRQALVRAAAE 60 Query: 61 GLL-YRTSKGWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMR----AIFQ 115 GL+ ++G A+SFT+DD+I +++LRA+LEG A L A I E++ M A+ Q Sbjct: 61 GLVQIFPNRGAVARSFTVDDLIEMYDLRALLEGHAAYLAARRITAEQLARMEMAATALEQ 120 Query: 116 S---AYQKRQDQDKDAYYLADKK--FHNLIASEIQDFHLSKSLESFKVIQTSLTQGLYRS 170 S +++RQD + ++L + FH IA + L L + + Sbjct: 121 SLTLTFERRQD---EVHFLVEHNAVFHQTIAEAAGNQRLITMLNQIVAVPLQFRSFYWYQ 177 Query: 171 PDETYPE---HMAIIDAIEKRDGDLAEELMRNHI 201 PD+ H +I++A+ DGD A +MR HI Sbjct: 178 PDQRQISNFFHRSILNALRLGDGDRARAMMREHI 211 >Q1IC75.1 Q1IC75_PSEE4 Putative transcriptional regulator, GntR family Length = 238 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 39/219 (17%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTSK 68 +TL + V+ R++ I+ GE P I + +L T G+SR PLR+A+ LE + LL R Sbjct: 16 ETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLLVRVPH 75 Query: 69 -GWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKD 127 G S + ++I ++E+R LEG+ACRL A + + I +R + + + Q Sbjct: 76 VGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAAIDELRHVLDTHERDAAFQAGQ 135 Query: 128 AYYLADKKFHNLIASEIQDFHLSKSLESFKVIQTSLTQGLYR------------------ 169 YY + + DFH +++IQ S Q LY+ Sbjct: 136 GYYQQEGDY---------DFH-------YRIIQGSGNQTLYKMLCGELYQLVRMYRIQFS 179 Query: 170 ----SPDETYPEHMAIIDAIEKRDGDLAEELMRNHIRAT 204 P + + EH I+DAIE RDG+LAE LMR HI A+ Sbjct: 180 TTPNRPRQAFAEHHRILDAIEARDGELAELLMRRHIGAS 218 >B0K475.1 B0K475_THEPX Transcriptional regulator, GntR family Length = 225 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 18/203 (8%) Query: 11 LDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTS-KG 69 L V+ +++ II G+ +P + +++ QL E LGVSRTP+R+A+ +LE+EGL+ KG Sbjct: 13 LRDVVFDYMKDAIITGKLRPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMIPRKG 72 Query: 70 WYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKDAY 129 Y D+++V E+R+ LEGLA L A I EE+I ++ I + +K ++ D + Sbjct: 73 AYVADLDAKDLLNVLEVRSSLEGLAASLAAERITEEEIDKLKKIIEEFQKKIEEGDNEGL 132 Query: 130 YLADKKFHNLIASEIQDFHLSKSLESFKVIQTSLTQGLYR----------SPDETYPEHM 179 DK+FH+LI F S++ + I +L + ++R + + EH Sbjct: 133 VKLDKEFHDLI------FTASRN-DKLIQIMNNLQEHVHRFRVRYINEEKKAKKIHQEHK 185 Query: 180 AIIDAIEKRDGDLAEELMRNHIR 202 I +AIE RD D A + HIR Sbjct: 186 KITEAIEARDTDAARKWAEKHIR 208 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,140,923,367 Number of extensions: 42196552 Number of successful extensions: 136984 Number of sequences better than 1.0e-05: 2887 Number of HSP's gapped: 135394 Number of HSP's successfully gapped: 2887 Length of query: 217 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 87 Effective length of database: 1,835,964,253 Effective search space: 159728890011 Effective search space used: 159728890011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)