BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0020.p (425 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q020M2.1 Q020M2_SOLUE Putative uncharacterized protein 159 5e-37 A3HX79.1 A3HX79_9SPHI Putative uncharacterized protein 156 5e-36 Q2CF10.1 Q2CF10_9RHOB Putative uncharacterized protein 155 9e-36 Q2CF11.1 Q2CF11_9RHOB Putative uncharacterized protein 143 4e-32 C1VS15.1 C1VS15_9EURY Putative uncharacterized protein 135 8e-30 >Q020M2.1 Q020M2_SOLUE Putative uncharacterized protein Length = 347 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 110/335 (32%), Positives = 164/335 (48%), Gaps = 22/335 (6%) Query: 3 KTVLSIAGTDFYINGKKVYEEIQDSRPEAHGLLMNARFIQGIFDDSEQPERFNRFG---- 58 +T ++I G F+INGK Y GLLMN R +QGIFDD PE R+ Sbjct: 14 RTEIAIRGDRFFINGKPTYAGRTYRGMRIEGLLMNCRTVQGIFDDL-NPETRERWAYPDT 72 Query: 59 RTFDPEQNTDDLIAALPEWYAHGLRAFTVGLQGGGPCFTLFNEKLNNNPFDEDGTVFDPX 118 R +D E+NT + + A+PEW HGL AFT+ LQGG P + N+ D G + P Sbjct: 73 RRWDAERNTREFVEAMPEWRRHGLLAFTINLQGGSPEGYSKAQPWENSAIDAQGDL-RPA 131 Query: 119 XXXXXXXXXXXXXEIGMVVIVCFFYFFQAERLRNGRAVLEATRAASRFLKQGGYTNVIIE 178 E+GM IV +FYF Q +R+++ AV A A+ +L GGY N+++E Sbjct: 132 YMARLARILDRADELGMAAIVGYFYFGQDQRVKDEAAVRRAVENATAWLLAGGYRNILVE 191 Query: 179 IANEHDLTKKHSLLEFPEGIVTLMEMAKQES--GGMLVGCSSTAPGIS--EQIAEESDIV 234 + NE ++ H +L+ P + L+E+ K +S G L +S G + + SD + Sbjct: 192 VNNECNVNYHHEILK-PARVHELIELVKSKSLGGRRLAAGTSYGGGTAAGANVIAVSDFL 250 Query: 235 FYHGNGR-TRQQYYNDVRQLRSLA--PDKPILCNEDSQ-----ALGNLEVAFREHTSWGY 286 HGNG + ++ + + R+ A + P+L NED A ++ A SWGY Sbjct: 251 LLHGNGADSPERIRAMISKTRATAGYREMPVLINEDDHFRFDDADNHMAAALGAFVSWGY 310 Query: 287 YNNLTKQEPPTDWGITXXXXGEDRFFAYRMAKTIG 321 ++ Q PP WGI R F ++A+ G Sbjct: 311 FDPEGYQCPPVRWGIDTE---RKRAFFRKLAEITG 342 >A3HX79.1 A3HX79_9SPHI Putative uncharacterized protein Length = 364 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 164/323 (50%), Gaps = 27/323 (8%) Query: 4 TVLSIAGTDFYINGKKVYEEIQDSRPEAHGLLMNARFIQGIFDDSEQPERFNRF----GR 59 T++ I F ING+ YE + GLLMN+R +QG+FDD PE + + Sbjct: 28 TLVEIKEDQFLINGEPTYEGRFWKGNKIEGLLMNSRMVQGVFDDL-NPETTVNWEYPDTK 86 Query: 60 TFDPEQNTDDLIAALPEWYAHGLRAFTVGLQGGGPCFTLFNEKLNNNPFDEDGTVFDPXX 119 +D E+NT++ +A +P W +HGL +FT+ LQGG P + N F+EDGT+ Sbjct: 87 KWDAERNTNEFVAHMPAWKSHGLLSFTINLQGGSPFGYSQGQPWINTAFNEDGTL-RGDY 145 Query: 120 XXXXXXXXXXXXEIGMVVIVCFFYFFQAERLRNGRAVLEATRAASRFLKQGGYTNVIIEI 179 E+GMV I+ FYF Q ERL++ +AV+ A A ++ + GY NV+IE+ Sbjct: 146 FNRLEKILDQADELGMVPILGLFYFGQDERLKDEKAVIHAVENAVDWILEKGYRNVLIEV 205 Query: 180 ANEHDLTKKHSLLEFPEGIVTLMEMAK--QESGGMLVGCSSTAPGI--SEQIAEESDIVF 235 NE ++ H +L+ PE + L+E+ K ++ G L+ +S G E + + +D + Sbjct: 206 NNECNVRYDHEILQ-PERVHELIELVKNREKDGYRLLVSTSYGGGTVPKENVVKAADFIL 264 Query: 236 YHGNG-RTRQQYYNDVRQLRSLA--PDKPILCNED-----SQALGNLEVAFREHTSWGYY 287 HGNG + + V R ++ ++PI+ NED Q L N A + SWG++ Sbjct: 265 LHGNGVKDPKNITGQVEATREVSGYSNQPIVYNEDDHFNFDQELNNFTAAVSSYASWGFF 324 Query: 288 NNLTK--------QEPPTDWGIT 302 + K Q P DWGI Sbjct: 325 DYRMKDEGYEQGYQSVPVDWGIN 347 >Q2CF10.1 Q2CF10_9RHOB Putative uncharacterized protein Length = 339 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 170/329 (51%), Gaps = 38/329 (11%) Query: 4 TVLSIAGTDFYINGKKVYEEIQDSRPEAHGLLMNARFIQGIFDDSEQPERFNRFG----R 59 T ++I G F I+GK YE + + GLL+N R +QG FDD P+ +++ Sbjct: 2 TRVTIQGDGFLIDGKPTYEGRSWNGHKIEGLLLNTRMVQGTFDDV-NPDTVHQWAYADTG 60 Query: 60 TFDPEQNTDDLIAALPEWYAHGLRAFTVGLQGGGPCFTLFNEKLNNNPFDEDGTVFDPXX 119 T+DP++NT + IAA+PEW AHG+ A TV LQGG P + N+ F+ DGT+ P Sbjct: 61 TWDPDRNTSEFIAAMPEWRAHGMLAITVNLQGGSPYGYSKEQPWVNSAFEADGTL-RPAF 119 Query: 120 XXXXXXXXXXXXEIGMVVIVCFFYFFQAERLRNG--RAVLEATRAASRFLKQGGYTNVII 177 E+GMVVIV FYF Q E++ G AV A +R+L + G+ N+++ Sbjct: 120 MERLRRILKAADELGMVVIVGLFYFGQ-EKVFEGDEDAVRRAVDNGTRWLLESGFENLLL 178 Query: 178 EIANEHDLTKKHSLLEFPEGIVTLMEMAK---QESGGMLVGCSSTAPGISE-QIAEESDI 233 EI NE ++ + +L PEG+ L+E AK ++ +LVG S + + + + SD Sbjct: 179 EINNECNVRYELPVL-MPEGVHELIERAKGIEKDGRRLLVGTSYGGGRVPDPSVVKVSDF 237 Query: 234 VFYHGNG-----RTRQQYYNDVRQLRSLA--PDKPILCNED-----SQALGNLEVAFREH 281 + HGNG R R+ VRQ R+L KPIL NED + N A E+ Sbjct: 238 MLLHGNGVEDPDRIREM----VRQTRALEGYTPKPILFNEDDHFDFDKPDNNFVAAVSEY 293 Query: 282 TSWGYYNNLTK--------QEPPTDWGIT 302 SWGY++ + Q P +WGI+ Sbjct: 294 ASWGYFDFRMEGEGYDDGYQSVPVNWGIS 322 >Q2CF11.1 Q2CF11_9RHOB Putative uncharacterized protein Length = 338 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 160/323 (49%), Gaps = 29/323 (8%) Query: 4 TVLSIAGTDFYINGKKVYEEIQDSRPEAHGLLMNARFIQGIFDDSEQPERFNRFGR---- 59 T ++I G F I+GK YE + + GLL+N R +QGIFDD PE ++ Sbjct: 2 TSVAIRGDGFLIDGKPTYEGRTWNGRKIEGLLLNTRMVQGIFDDV-NPETAGQWASADTG 60 Query: 60 TFDPEQNTDDLIAALPEWYAHGLRAFTVGLQGGGPCFTLFNEKLNNNPFDEDGTVFDPXX 119 T+D ++NT + IAA+P+W HG+ A TV LQGG P + + F+ DG++ P Sbjct: 61 TWDADRNTSEFIAAMPQWRDHGVLAITVNLQGGSPYGYSTEQPWVTSAFERDGSL-RPAF 119 Query: 120 XXXXXXXXXXXXEIGMVVIVCFFYFFQAERLRNG--RAVLEATRAASRFLKQGGYTNVII 177 E+GMVVIV FYF Q E++ G AV A +L + G+ NV++ Sbjct: 120 MERLRRILQAADELGMVVIVGLFYFGQ-EKVFEGDEDAVRAGVDNAVAWLLESGFENVLL 178 Query: 178 EIANEHDLTKKHSLLEFPEGIVTLMEMAK---QESGGMLVGCSSTAPGISEQIAEESDIV 234 EI NE D+ + +L+ G+ L+E AK ++ +LVG S + + A SD + Sbjct: 179 EINNECDVVYELPVLK-GTGVHELIERAKGITRDGRRLLVGTSFVQGLPTSEAARASDFM 237 Query: 235 FYHGNGRTRQQYYND-VRQLRSLA--PDKPILCNED-----SQALGNLEVAFREHTSWGY 286 HGN R + VRQ R+L KPIL NED + + A E+ SWG+ Sbjct: 238 LLHGNLRDGPDAVREMVRQTRALEGYTPKPILFNEDDHFDFDKPDNHFTAAIGEYASWGF 297 Query: 287 YNNLTK--------QEPPTDWGI 301 ++ K Q P DWGI Sbjct: 298 FDYRMKGEGPEEGYQSVPVDWGI 320 >C1VS15.1 C1VS15_9EURY Putative uncharacterized protein Length = 344 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 159/346 (45%), Gaps = 34/346 (9%) Query: 4 TVLSIAGTDFYINGKKVYEEIQDSRPEAHGLLMNARFIQGIFDDSEQPERFNRFGRT--- 60 T + I G F ING++ Y GLL NAR + IFDD E PE + + Sbjct: 8 THVGIDGDVFTINGQRTYAGRTHEGQSIEGLLFNARLVHAIFDD-ENPETVDNWAYPDTG 66 Query: 61 -FDPEQNTDDLIAALPEWYAHGLRAFTVGLQGGGPCFTLFNEKLNNNPFDEDGTVFDPXX 119 +DPE+N + + A+P W HGLRA LQ G P ++ + + DGT+ P Sbjct: 67 EWDPERNVSEFLGAMPTWRKHGLRAIATNLQCGSPEGYSESQPWTVSAYRPDGTL-KPVW 125 Query: 120 XXXXXXXXXXXXEIGMVVIVCFFYFFQAERLRNGRAVLEATRAASRFLKQGGYTNVIIEI 179 E+GM VI+ FYF Q + L + +V+ A +L + YTNV++E+ Sbjct: 126 MGRLERVLDRADELGMAVILGLFYFGQDDVLADETSVIRAVDEVMAWLHEKEYTNVVLEV 185 Query: 180 ANEHDLTKKHSLLEFPEGIVTLMEMAK--QESGGMLVGCSSTAPGI--SEQIAEESDIVF 235 ANE D+ H++L+ PE I L+E + + G +S + G+ ++ + + SD+V Sbjct: 186 ANECDINYDHAILQ-PERITELIERIRETEHDGHRYPVGTSFSGGVVPTDDVIDASDLVL 244 Query: 236 YHGNG-----RTRQQYYNDVRQLRSLAPDKPILCNEDSQ----ALGNLEVAFREHTSWGY 286 HGN R R+ +VR + P PI+ NED + N+ A SWGY Sbjct: 245 LHGNNVDDPERIREM-VAEVRSAPTYEP-MPIVFNEDDHFRFGSDSNMLAALESGASWGY 302 Query: 287 YNNLTK------QEPPTDWGITXXXXGEDRFFAYRMAKTIGITLPE 326 ++ Q PP W + FFAY G+T P+ Sbjct: 303 FDPGENDYWHGYQSPPVRWDPNTAR--KRAFFAY----LDGVTDPD 342 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,633,328,178 Number of extensions: 112066291 Number of successful extensions: 216447 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 216425 Number of HSP's successfully gapped: 7 Length of query: 425 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 287 Effective length of database: 1,760,596,133 Effective search space: 505291090171 Effective search space used: 505291090171 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)