BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0019.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0CMQ3.1 C0CMQ3_9FIRM Putative uncharacterized protein (Fragment) 147 9e-34 B1DGR3.1 B1DGR3_9BACL Amidohydrolase 2 146 1e-33 B0PGQ9.1 B0PGQ9_9FIRM Putative uncharacterized protein 145 2e-33 A6NZC3.1 A6NZC3_9BACE Putative uncharacterized protein 106 2e-21 B6FWE6.1 B6FWE6_9CLOT Putative uncharacterized protein 99 3e-19 >C0CMQ3.1 C0CMQ3_9FIRM Putative uncharacterized protein (Fragment) Length = 191 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 109/181 (60%) Query: 58 RIYGMTSLDPWLAEDIYVAEVERCIKELGFVAIKLHPLGHNISPLSKLCNKIYELAELHQ 117 + +GM S++P + Y E +RCI+ELGFV IK+ P+GH P SK C ++E+ + Sbjct: 10 KFWGMASINPHFRPEDYDEEAQRCIQELGFVGIKITPIGHAAHPSSKDCMHVWEVCRHLK 69 Query: 118 VPVLVHTGTGNPFSLPSLMIDPAKRYPGVSFILCHAGFAVYADEAIVAAKHCDNIYLEPS 177 VP+++HTG G PFS P + + +P V +L HAG ++ +A A DN+YLEPS Sbjct: 70 VPLMIHTGAGIPFSDPISVQKALESFPDVPCVLAHAGSEMHNQQATYLAAKYDNVYLEPS 129 Query: 178 WCQTYMTRKMIDQVGLEKIIMGSDHISNLPVELAKYNNIGFSDEQLEAIFYNNPKRIFKL 237 W M+ +VG KI+ SD++ +PVELAKY ++ +++ LE + Y N +++L Sbjct: 130 WVGVIGVMNMVKRVGCSKIMFSSDNVYQIPVELAKYRSVIKNEDDLERVLYKNTAELYQL 189 Query: 238 E 238 + Sbjct: 190 K 190 >B1DGR3.1 B1DGR3_9BACL Amidohydrolase 2 Length = 246 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 2/238 (0%) Query: 2 HLGVSKFSGVSTTEEDLMQAMDRFGIAAGLVMPQPTLD--NVFEVHSRIGDMMTKYPQRI 59 HLG T E+ ++ + +G+ ++ P D V E H RI YP + Sbjct: 8 HLGWDYVFDEDFTWEEQLEKHEIYGVTKTILQPASCHDIETVREQHDRIAQAARMYPGKF 67 Query: 60 YGMTSLDPWLAEDIYVAEVERCIKELGFVAIKLHPLGHNISPLSKLCNKIYELAELHQVP 119 YGM + +P L + +Y EV RC++ELGFV IK+H H + P + K++ LA VP Sbjct: 68 YGMANPNPHLKDAVYEEEVRRCVEELGFVGIKIHTFAHAVHPGGRDGMKVFALASELDVP 127 Query: 120 VLVHTGTGNPFSLPSLMIDPAKRYPGVSFILCHAGFAVYADEAIVAAKHCDNIYLEPSWC 179 V+VHTG G PF+ P+ +I+PA +P ++ H G + A E +A K N+Y + +W Sbjct: 128 VMVHTGAGIPFANPTNLIEPALAFPDAKIVMAHCGMMIMAGETSIALKAASNLYADVTWT 187 Query: 180 QTYMTRKMIDQVGLEKIIMGSDHISNLPVELAKYNNIGFSDEQLEAIFYNNPKRIFKL 237 + R Q G + + G+DH N ELAK G ++E+ E I Y + + +++L Sbjct: 188 SGFNLRHWSQQFGAHRFLFGTDHADNAGTELAKVKTCGLTEEEQEWILYKSAQSVYRL 245 >B0PGQ9.1 B0PGQ9_9FIRM Putative uncharacterized protein Length = 252 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 3/239 (1%) Query: 2 HLGVSKFSGVSTTEEDLMQAMDRFGIAAGLVMP---QPTLDNVFEVHSRIGDMMTKYPQR 58 HLG TE L+ M GI +V P +P L++ H RI + +P R Sbjct: 8 HLGRDVVYDFEVTESRLLGTMAENGIGGAIVQPCIARPYLEDTRAAHDRIAALCQAHPGR 67 Query: 59 IYGMTSLDPWLAEDIYVAEVERCIKELGFVAIKLHPLGHNISPLSKLCNKIYELAELHQV 118 I+GM S++P D Y AE+ RC+KELGFV +KL P GH + LS+ ++++ A + Sbjct: 68 IWGMASINPHFRPDDYRAELRRCVKELGFVGVKLTPNGHAVDLLSRDAREVFDAARELSI 127 Query: 119 PVLVHTGTGNPFSLPSLMIDPAKRYPGVSFILCHAGFAVYADEAIVAAKHCDNIYLEPSW 178 PV+VHTG G PF+ P + A+ Y V ++ HAG ++ +A++ A+ DN++LEPS Sbjct: 128 PVMVHTGMGVPFADPVRLTPLARDYSDVRIVIAHAGSDFFSVQAMLLAQAFDNVWLEPSG 187 Query: 179 CQTYMTRKMIDQVGLEKIIMGSDHISNLPVELAKYNNIGFSDEQLEAIFYNNPKRIFKL 237 + + + +K++ +D + EL KY LE IF + +F+L Sbjct: 188 VGIENIEQFLQALPPDKLMFSTDVPAQAAGELFKYRQAVRDPAALEQIFSHTAIEVFRL 246 >A6NZC3.1 A6NZC3_9BACE Putative uncharacterized protein Length = 241 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 10/241 (4%) Query: 1 MHLGVSKFSGVSTTEEDLMQAMDRFGIA-AGLVMPQPTLDNVFEVHSRIGDMMTKYPQRI 59 +H+G S G S T DL+ +MDRF I +GL + L E++ R+ + +YP RI Sbjct: 7 VHMGKSS-KGTSYTLRDLIDSMDRFEIERSGLSILNGVLTP--ELNDRVMAAVKEYPDRI 63 Query: 60 YGMTSLDPWLAEDIYVAEVERCIKELGFVAIKLHPLGHNISPLSKLC-NKIYELAELHQV 118 G ++P E + EV RC+ F IK H H P + + I + + V Sbjct: 64 VGFAYINP--REPGAIDEVRRCLDSGLFRGIKFHSWKHGYFPDNNTALDGIIDAITPYDV 121 Query: 119 PVLVHTGTGNPFSLPSLMIDPAKRYPGVSFILCHAGFAVYADEAIVAAKHCDNIYLEPS- 177 P+L HTGT P SLP A R+P +F+ H G+ + + AK N+Y++ + Sbjct: 122 PILCHTGTA-PLSLPQQWASIAARHPKATFVFAHIGYLDFGYGCVECAKPLPNVYVDTAG 180 Query: 178 WCQTYMTRKMIDQVGLEKIIMGSDHISNLP-VELAKYNNIGFSDEQLEAIFYNNPKRIFK 236 + + K ++++G ++II +D P E+ K+ S E + IFY+N K+++K Sbjct: 181 QVEIQVMEKALEELGPDRIIFATDWPYKYPGSEIVKFEPYHLSPEDRQKIFYDNAKKLWK 240 Query: 237 L 237 L Sbjct: 241 L 241 >B6FWE6.1 B6FWE6_9CLOT Putative uncharacterized protein Length = 237 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 17/241 (7%) Query: 2 HLG-VSKFSGVSTTEEDLMQAMDRFGIAAGLVMPQPTLDNVFEVHSRIGDMMTKYPQRIY 60 H+G + ++ V TEE L++ M+++ I ++ + DN + MM ++P RI Sbjct: 9 HIGYIGGWADVGITEEGLLKQMNKYNIERTVLCNE---DNDITLR-----MMERHPGRII 60 Query: 61 GMTSLDPWLAEDIYVAEVERCIKELGFVAIKLHPLGHNISPLSKLCNKIYELAELHQVPV 120 G ++P E V +E +K+ GF ++KL+PL H + + + + E+A+ + VP+ Sbjct: 61 GCLYVNPL--EPKTVDSMESYLKK-GFTSVKLNPLRHAYCADAAVLDPVLEIAKKYNVPI 117 Query: 121 LVHTGTGNPFSLPSLMIDPAKRYPGVSFILCHA--GFAVYADEAIVAAKHCDNIYLEPSW 178 +H+G P+SLP + A+R+P V ++ H G VY D A+ A+ NIYLE S Sbjct: 118 CIHSGH-PPYSLPWQIGLLAERHPNVKIMMIHMGHGHGVYIDAALKMARRYSNIYLEMSG 176 Query: 179 CQTYMT-RKMIDQVGLEKIIMGSDHISNLP-VELAKYNNIGFSDEQLEAIFYNNPKRIFK 236 + R+ + VG ++I+ G+D + P +E+ K G ++ E +FYNN + F Sbjct: 177 MPMQIKIREAYETVGSDRIMFGTDTPFHHPTIEMQKVITSGLDEKAQEDVFYNNAAKFFS 236 Query: 237 L 237 + Sbjct: 237 I 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,500,927,742 Number of extensions: 63464999 Number of successful extensions: 131588 Number of sequences better than 1.0e-05: 163 Number of HSP's gapped: 131522 Number of HSP's successfully gapped: 163 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)