BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0018.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0HI86.1 C0HI86_MAIZE Putative uncharacterized protein 183 8e-45 B6U6P8.1 B6U6P8_MAIZE Glycosyl hydrolase, family 43 protein 182 1e-44 B9H6Q7.1 B9H6Q7_POPTR Predicted protein (Fragment) 181 3e-44 B9GCT2.1 B9GCT2_ORYSJ Putative uncharacterized protein 180 8e-44 B9SH08.1 B9SH08_RICCO Beta-glucanase, putative 178 2e-43 >C0HI86.1 C0HI86_MAIZE Putative uncharacterized protein Length = 467 Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 93/188 (49%), Positives = 123/188 (65%), Gaps = 6/188 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVAVSD+P GPF++L++K+P+ +SRDMT+F+D DGK YL++S+ Sbjct: 242 MWMHIDDANYTKASVGVAVSDSPTGPFTYLYSKRPHDCESRDMTIFKDDDGKAYLIYSSE 301 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LTDDY DVT + +L Q REAPAL K + YYM+TSGCTGW PN+AL Sbjct: 302 DNSELHIGPLTDDYLDVTDVMRRLLIAQHREAPALFKHEGTYYMVTSGCTGWAPNTALAH 361 Query: 121 ESEYLFNSWRLIDNPCEGPN--YRQ-TFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 + + W + NPC G N +R TFF QST++ V G P M D W P +L+ S Sbjct: 362 AATSVMGPWETLGNPCVGGNEVFRSTTFFSQSTFVLPVPGLPGSFIFMADRWNPSDLRDS 421 Query: 175 GYSILPVT 182 Y LP+T Sbjct: 422 RYVWLPLT 429 >B6U6P8.1 B6U6P8_MAIZE Glycosyl hydrolase, family 43 protein Length = 467 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/188 (49%), Positives = 122/188 (64%), Gaps = 6/188 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVAVSD+P GPF++L++K+P+ +SRDMT+F+D DGK YL++S+ Sbjct: 242 MWMHIDDANYTKASVGVAVSDSPTGPFTYLYSKRPHDCESRDMTIFKDDDGKAYLIYSSE 301 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LTDDY DVT + +L Q REAPAL K + YYM+TSGCTGW PN+AL Sbjct: 302 DNSELHIGPLTDDYLDVTDVMRRLLIAQHREAPALFKHEGTYYMVTSGCTGWAPNTALAH 361 Query: 121 ESEYLFNSWRLIDNPCEGPN--YRQ-TFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 + W + NPC G N +R TFF QST++ V G P M D W P +L+ S Sbjct: 362 AATSXMGPWETLGNPCVGGNEVFRSTTFFSQSTFVLPVPGLPGSFIFMADRWNPSDLRDS 421 Query: 175 GYSILPVT 182 Y LP+T Sbjct: 422 RYVWLPLT 429 >B9H6Q7.1 B9H6Q7_POPTR Predicted protein (Fragment) Length = 239 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 120/187 (64%), Gaps = 6/187 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A G+A+SD P GPF++LH+K+P+ DSRDMT+F+D DG Y+++S+ Sbjct: 20 MWMHIDDANYTKAAVGIAISDYPTGPFNYLHSKQPHGFDSRDMTIFKDDDGVAYIIYSSE 79 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LT+DY DVT + +L Q REAPAL K YYMITSGCTGW PN AL Sbjct: 80 DNSELHIGPLTEDYLDVTHVVRRILIGQHREAPALFKYQGTYYMITSGCTGWAPNEALAH 139 Query: 121 ESEYLFNSWRLIDNPCEGPN--YRQ-TFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 +E + W + NPC G N +RQ TFF Q TY+F + G P + D W P +L+ S Sbjct: 140 AAESIMGPWETMGNPCVGGNKMFRQTTFFAQGTYVFPLTGLPGSFVFIADRWNPADLRDS 199 Query: 175 GYSILPV 181 Y LP+ Sbjct: 200 RYVWLPL 206 >B9GCT2.1 B9GCT2_ORYSJ Putative uncharacterized protein Length = 764 Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 91/188 (48%), Positives = 122/188 (64%), Gaps = 6/188 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVA+SD+P GPFS+L++K+P+ +SRDMT+F+D +GK YL++S+ Sbjct: 539 MWMHIDDTNYTKASVGVAISDSPTGPFSYLYSKQPHDCESRDMTIFKDDNGKAYLIYSSE 598 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I +LTDDY DVT +L Q REAPAL K + YYMITSGCTGW PN+AL Sbjct: 599 DNSELHIGQLTDDYLDVTDNMRRLLIAQHREAPALFKYEGTYYMITSGCTGWAPNTALAH 658 Query: 121 ESEYLFNSWRLIDNPCEGPN--YRQ-TFFGQSTYIFYV---NGQPYLMLDHWVPHNLQGS 174 + + W + NPC G N +R TFF QST++ + +G M D W P L+ S Sbjct: 659 AATAIMGPWETLGNPCVGGNDIFRSTTFFSQSTFVLPIPGLSGSFIFMADRWSPSELRDS 718 Query: 175 GYSILPVT 182 Y LP+T Sbjct: 719 RYVWLPLT 726 >B9SH08.1 B9SH08_RICCO Beta-glucanase, putative Length = 499 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/187 (47%), Positives = 119/187 (63%), Gaps = 6/187 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A G+A+SD+P GPF ++H+K+P+ +SRDMT+F+D DG YL++S+ Sbjct: 273 MWMHIDDVNYTKAAVGIAISDSPTGPFDYVHSKRPHGFESRDMTIFKDDDGVAYLIYSSE 332 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LTD+Y DVT + +L Q REAPAL K YYMITSGCTGW PN AL Sbjct: 333 DNSELHIGPLTDNYLDVTHVMRRILIGQHREAPALFKHQGTYYMITSGCTGWAPNEALAH 392 Query: 121 ESEYLFNSWRLIDNPCEGPN--YR-QTFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 +E + W + NPC G N +R TFF QST++ + G P M D W P +L+ S Sbjct: 393 AAESIMGPWETMGNPCIGGNKIFRLTTFFAQSTFVIPLTGLPGSFIFMADRWNPADLRDS 452 Query: 175 GYSILPV 181 Y LP+ Sbjct: 453 RYVWLPL 459 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,356,957,120 Number of extensions: 57485132 Number of successful extensions: 102275 Number of sequences better than 1.0e-05: 128 Number of HSP's gapped: 102147 Number of HSP's successfully gapped: 128 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)