BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0013.p
         (121 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9KFJ6.1 Q9KFJ6_BACHD Transcriptional regulator (AraC/XylS family)     89   9e-17
B3K5E6.1 B3K5E6_9BACI Helix-turn-helix-domain containing protein...    84   5e-15
Q8EPK8.1 Q8EPK8_OCEIH Transcriptional regulator (AraC/XylS family)     77   6e-13
B1D8A9.1 B1D8A9_9BACL Transcriptional regulator, AraC family           75   2e-12
B3KFU0.1 B3KFU0_9BACI Helix-turn-helix-domain containing protein...    70   4e-11

>Q9KFJ6.1 Q9KFJ6_BACHD Transcriptional regulator (AraC/XylS family)
          Length = 769

 Score = 89.4 bits (220), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 76/116 (65%)

Query: 5   KSAFLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQM 64
           K+ F  RL+LF ++L T+PV+++G+ SY+K    + E+V+E    ++ QTQ  +E IL+ 
Sbjct: 5   KTTFYVRLILFILILSTLPVLLVGTFSYIKASDAIHEQVSEDKRSSVYQTQTNIEHILKT 64

Query: 65  IDNSIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEVELLQTG 120
            D+S+  F+NS L++++++  L+   +    D+ + L  LQTY++GI+++ LL T 
Sbjct: 65  ADHSLTYFVNSSLLRDTLNQPLTATQFQLYNDIRKELTHLQTYEIGIEDIVLLSTN 120


>B3K5E6.1 B3K5E6_9BACI Helix-turn-helix-domain containing protein AraC type
          Length = 799

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 66/99 (66%)

Query: 8   FLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQMIDN 67
           F ++++++S+LLG+ P I++G  SY      V+EKVNEG+M  + QT+++VEQ+L  +  
Sbjct: 28  FKSKILIYSLLLGSFPTILIGFFSYFIAAKDVEEKVNEGNMHLLNQTRMRVEQVLDSMQR 87

Query: 68  SIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQT 106
           + +QF NS L+K  +   LS  D++ + +LT+ +  LQT
Sbjct: 88  TALQFENSSLLKSVMDSKLSGQDFIKVRELTKEMFNLQT 126


>Q8EPK8.1 Q8EPK8_OCEIH Transcriptional regulator (AraC/XylS family)
          Length = 769

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 65/104 (62%)

Query: 11  RLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQMIDNSII 70
           +L+ F I+L T+PVI++G  SYL++  I++  V E   Q++ Q Q  VEQ+L+ +DNS+ 
Sbjct: 13  KLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNVEQVLKSVDNSLT 72

Query: 71  QFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEV 114
            F+ SP  ++ +   L+  +++   +  + L  LQT + GIQ+V
Sbjct: 73  HFVRSPTTQDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDV 116


>B1D8A9.1 B1D8A9_9BACL Transcriptional regulator, AraC family
          Length = 768

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 73/115 (63%)

Query: 7   AFLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQMID 66
           +FL ++ +F ILL T+PV+ +G  SY+ + S +Q+ VN+G+ Q + Q    VEQIL  ++
Sbjct: 5   SFLTKMTIFGILLSTLPVLFIGIFSYVTSSSEIQKDVNKGNYQLLVQINANVEQILTTVN 64

Query: 67  NSIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEVELLQTGY 121
           +++ Q INS ++K+++   L+  D+    +L + L  +Q++D  +++V L+   +
Sbjct: 65  HTLNQVINSSVLKQTMSSPLNVSDFTLYGNLRDELLHMQSFDTKLEDVILINNRH 119


>B3KFU0.1 B3KFU0_9BACI Helix-turn-helix-domain containing protein AraC type
          Length = 770

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 66/110 (60%)

Query: 5   KSAFLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQM 64
           KS+F ++++LF   +  IP++ LG  S++K+ + VQ  VN  ++Q M QT   +EQ+L+ 
Sbjct: 4   KSSFYSKMVLFGCFISIIPLVALGFFSFMKSSTSVQNHVNSSNIQIMNQTNSNLEQVLRT 63

Query: 65  IDNSIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEV 114
           +D ++   INS +++ +++  LS  D+     L E +  LQ+ +  + +V
Sbjct: 64  VDYTLNYVINSNMLQSALYRPLSYYDFQLYNKLREEMSLLQSPETKVTDV 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 577,458,574
Number of extensions: 18572223
Number of successful extensions: 60839
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 60840
Number of HSP's successfully gapped: 11
Length of query: 121
Length of database: 3,060,696,203
Length adjustment: 87
Effective length of query: 34
Effective length of database: 2,241,067,898
Effective search space: 76196308532
Effective search space used: 76196308532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)