BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0008.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7VNW7.1 A7VNW7_9CLOT Putative uncharacterized protein 338 2e-91 A6LXF9.1 A6LXF9_CLOB8 Binding-protein-dependent transport system... 326 1e-87 C5ETL5.1 C5ETL5_9FIRM Transport protein 294 7e-78 C5EQZ3.1 C5EQZ3_9FIRM Transport protein 280 8e-74 Q65EZ7.1 Q65EZ7_BACLD Putative uncharacterized protein 274 6e-72 >A7VNW7.1 A7VNW7_9CLOT Putative uncharacterized protein Length = 299 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 163/297 (54%), Positives = 219/297 (73%) Query: 1 MKFASRLMKGDRVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLG 60 MK + + D +G FVLPAV +MLFF GYPI+ N I+SFQ+V V TL+ P+K F G+ Sbjct: 1 MKKLKKFFRYDNIGYFFVLPAVIYMLFFVGYPIVSNFILSFQDVTVKTLSSPNKPFAGIE 60 Query: 61 NYKGLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMI 120 NY+ LF D +L TS+ NTL +TV + QF+IGF+LALFFN+ F +K VRGL+++PWMI Sbjct: 61 NYQTLFQDEVLRTSIINTLLFTVLCLVFQFMIGFLLALFFNRRFSFAKPVRGLLMMPWMI 120 Query: 121 PATITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXX 180 P T+TAL+FK+MFS++ GI++Q LM + + + P++WL P +AM +LI++N WIG+PF Sbjct: 121 PITVTALIFKFMFSSNVGIINQALMGIGLISAPIDWLTQPATAMIALIISNVWIGIPFNM 180 Query: 181 XXXXXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVY 240 P+ELYESA IDGA++ IT+P+L+P+I +VLILGFI TFKVFDLV+ Sbjct: 181 ILISTGLTTIPTELYESAGIDGANKLQTFWKITVPMLKPTIGSVLILGFIYTFKVFDLVF 240 Query: 241 VMTKGGPVDATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKEDE 297 VMT GGPV++T+ LST SYKLSF+ F +SQGAA AN+LF ILF+VSL YLK +E Sbjct: 241 VMTGGGPVNSTQMLSTYSYKLSFNMFKYSQGAAAANVLFVILFIVSLIYLKFAYSEE 297 >A6LXF9.1 A6LXF9_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 157/298 (52%), Positives = 225/298 (75%) Query: 2 KFASRLMKGDRVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGN 61 K++ +K +R G +FVLPA+ FML F GYPII N I+S ++V+V T + P K FVG+ N Sbjct: 4 KYSREFIKEERKGYIFVLPALIFMLAFVGYPIIYNFILSLRDVNVTTFSQPVKPFVGIEN 63 Query: 62 YKGLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIP 121 Y +F DP + S++NTL +T+ SI+IQF+IG LAL FN F LS+ +RGL+++ +++P Sbjct: 64 YIEVFKDPAMPISIWNTLVFTIGSISIQFIIGLGLALLFNLKFKLSEPLRGLMVVSYLVP 123 Query: 122 ATITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXX 181 T+TAL+FK+M+S SGGI++++LM ++ + P+ W++ ++M+S+ILTNSW+G+PF Sbjct: 124 MTVTALLFKFMYSTSGGIINELLMKFNLISQPIGWIIDSKTSMFSVILTNSWVGIPFNML 183 Query: 182 XXXXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYV 241 P +LYE+A +DGA+ + ITLP LRP+I +VL+LGFI TFKVFDLV+V Sbjct: 184 LLTTGLSNIPYDLYEAAKVDGANVIQRFFKITLPSLRPAILSVLVLGFIYTFKVFDLVFV 243 Query: 242 MTKGGPVDATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKEDEVM 299 MT GGPV++TE +ST +YKLSF++F+FS+GA VAN+LFAILF VSL YLKL+KEDEV+ Sbjct: 244 MTNGGPVNSTELMSTFAYKLSFTQFSFSKGATVANVLFAILFCVSLGYLKLIKEDEVI 301 >C5ETL5.1 C5ETL5_9FIRM Transport protein Length = 296 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 150/291 (51%), Positives = 203/291 (69%), Gaps = 3/291 (1%) Query: 12 RVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKE-FVGLGNYKGLFA--D 68 ++G LF PAV +ML F GYP+I+NII+SF+NVDV T + K+ FVG NY LF + Sbjct: 6 KMGFLFAAPAVLYMLVFIGYPMIQNIILSFKNVDVYTFSDATKQNFVGFRNYMELFTGKN 65 Query: 69 PLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALV 128 +L ++ NTL +TV SI QF+IGF LAL FNK F RG+ +I W++P T+ L+ Sbjct: 66 SILSKAIMNTLIFTVGSIFFQFIIGFGLALLFNKKFPGCSFFRGVTMISWLLPVTVAGLL 125 Query: 129 FKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXX 188 FK+MF++SGGIV+Q LM L + P++WLL P AM + ++ N WIG+PF Sbjct: 126 FKFMFASSGGIVNQFLMGLGLVKEPMDWLLKPGLAMTAAVVANIWIGIPFNMMLLITGLT 185 Query: 189 XXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPV 248 P ++YESAS+DGA + L IT+P+++P+I +VL LGF+ TFKVFDLV+VMTKGGPV Sbjct: 186 TIPGDIYESASLDGAGKLQTLFLITIPMIKPAIMSVLTLGFVYTFKVFDLVWVMTKGGPV 245 Query: 249 DATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKEDEVM 299 ++TE +ST +Y+LSF EF FSQGAA AN+LF IL VV Y+K + +DEVM Sbjct: 246 NSTELVSTYAYRLSFEEFQFSQGAAAANVLFLILLVVGCFYIKTISDDEVM 296 >C5EQZ3.1 C5EQZ3_9FIRM Transport protein Length = 298 Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 141/287 (49%), Positives = 197/287 (68%), Gaps = 2/287 (0%) Query: 14 GLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFADPLLGT 73 G F+LPA F+ YP+I N+ MSF V + T + F+GLGNY+ + A P++ Sbjct: 13 GYCFILPAAVFLALIVIYPLIYNLSMSFHEVTLETFR-GEQPFIGLGNYREVLAMPMVRK 71 Query: 74 SLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALVFKYMF 133 +++NT+Y+TV SI QF+IGF LAL F+K F LSK RGL+++ W++P + A V+K++F Sbjct: 72 AIWNTVYFTVMSILFQFIIGFALALLFSKAFRLSKISRGLLMVCWLVPVIVFASVWKWIF 131 Query: 134 SASG-GIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXXXXPS 192 + G GI++ L LH+ PV WL AM +LI+TN W GVPF P Sbjct: 132 AGDGSGILNYFLTQLHLVKAPVSWLTTERGAMTALIITNIWRGVPFNMLLLATGLTTLPE 191 Query: 193 ELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPVDATE 252 EL+E+A+IDGASR + RHITLPLL+P+I +V+ LGFI TFK FDL+Y+MT GGP+D+T+ Sbjct: 192 ELFEAAAIDGASRIQRFRHITLPLLKPTILSVVTLGFIYTFKAFDLIYIMTNGGPLDSTQ 251 Query: 253 TLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKEDEVM 299 L+T SYKL+FS F F QGAAVANI+ +L VV++ LKL++++EVM Sbjct: 252 ILATASYKLTFSNFEFGQGAAVANIMLVLLLVVAIFNLKLMEKEEVM 298 >Q65EZ7.1 Q65EZ7_BACLD Putative uncharacterized protein Length = 297 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 147/286 (51%), Positives = 201/286 (70%) Query: 14 GLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFADPLLGT 73 G ++ PAV FML GYP+I N+I+SFQNV + + F+G+ NY+ L D + Sbjct: 11 GYFYLFPAVLFMLALIGYPLIYNMILSFQNVSLANIASHDISFIGIENYQRLAQDKIFWA 70 Query: 74 SLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALVFKYMF 133 SL NTL YT S+ QF IGF+LALFF+ F L+ +RGL+++ W+IP T+TAL+FK+M Sbjct: 71 SLKNTLLYTAGSVVFQFAIGFLLALFFSMKFRLAPFLRGLMMVSWLIPLTVTALLFKFMM 130 Query: 134 SASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXXXXPSE 193 +++ G+ +Q+L+ + + P+ WL P A+WS+I+ N W+G+PF P + Sbjct: 131 ASNEGVFNQLLLSWGMIDTPIPWLSDPNMAIWSVIIANIWVGIPFNMLLISAGLSSLPED 190 Query: 194 LYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPVDATET 253 +YESAS+DGA+ + K H+TLPLLRP I V++LGFI TFKVFDLV+VMT GGPVDATE Sbjct: 191 VYESASLDGANAFQKFIHLTLPLLRPVITVVMMLGFIYTFKVFDLVFVMTGGGPVDATEV 250 Query: 254 LSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKEDEVM 299 LST+SY+ SF EF FS GAA AN+LF IL +VSL YL+L+K+DEVM Sbjct: 251 LSTVSYRYSFDEFQFSMGAASANVLFLILLLVSLVYLRLIKKDEVM 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,662,547,414 Number of extensions: 66227861 Number of successful extensions: 229082 Number of sequences better than 1.0e-05: 6506 Number of HSP's gapped: 220571 Number of HSP's successfully gapped: 6514 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)