BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0007.p (269 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5ETL6.1 C5ETL6_9FIRM Transport protein 278 3e-73 A7VNW8.1 A7VNW8_9CLOT Putative uncharacterized protein 273 1e-71 Q65EZ6.1 Q65EZ6_BACLD YurM 256 2e-66 A6LXF8.1 A6LXF8_CLOB8 Binding-protein-dependent transport system... 248 5e-64 C5EQZ4.1 C5EQZ4_9FIRM Transport protein 218 3e-55 >C5ETL6.1 C5ETL6_9FIRM Transport protein Length = 277 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 181/265 (68%) Query: 5 LAAALICIVFLFPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQVREDYNIFRNFL 64 L L+ ++F+FPLYWMI+T+ KT++EIF P +PK++ F A+ +Q+ + R F Sbjct: 13 LLGGLVFLIFIFPLYWMIVTALKTQVEIFSIPTPLWPKNLTFEAFAKQLSTSGDTLRGFK 72 Query: 65 NSIIISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKN 124 NS+IIS A VIA LSIPAAY LARFRF R+ ++L FLITQMLP++L LT L+I+F Sbjct: 73 NSLIISCGATVIATVLSIPAAYGLARFRFGARRGLVLFFLITQMLPSTLVLTSLYIMFSK 132 Query: 125 MGLYNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXX 184 M L NTY FS++ILRTYFV+IP+ELDEAAK+DGC +AF + Sbjct: 133 MHLLNTYWAPILADATLGIPFSIIILRTYFVSIPKELDEAAKIDGCGHVSAFTKIMLPIA 192 Query: 185 XXXXXXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMAFGVVSV 244 FS ++AW DL+Y TFI NM P+TS ++N++Q+Y T WN+ MAFG++++ Sbjct: 193 KPGIVVAAVFSFVYAWGDLIYGITFITNPNMRPITSSIYNYVQQYQTLWNSTMAFGIIAI 252 Query: 245 LPIILLFTFLQKYIISGLTNGAIKG 269 P++L+F F+QKYI+SGLTNGA+K Sbjct: 253 SPVVLIFIFMQKYIVSGLTNGAVKA 277 >A7VNW8.1 A7VNW8_9CLOT Putative uncharacterized protein Length = 282 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/252 (52%), Positives = 179/252 (71%), Gaps = 1/252 (0%) Query: 19 YWMIITSFKTELEIFQTPISFFPKSINFNAYFEQVRE-DYNIFRNFLNSIIISGAAMVIA 77 YW+++TS KTE EIF+ P + FP +N ++Y Q++ D+N+F++F NS+II+ + IA Sbjct: 31 YWILVTSLKTEQEIFRIPPTLFPSVLNTDSYAAQLQSGDFNMFQSFGNSMIIALSCTAIA 90 Query: 78 VALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKNMGLYNTYLXXXXX 137 V LS+PA+Y LARFRF+G+K+ ILSFLITQMLP S+ LTP+FIIFKNM L NTY Sbjct: 91 VILSVPASYGLARFRFRGKKVCILSFLITQMLPVSVILTPMFIIFKNMSLLNTYFSAILA 150 Query: 138 XXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXXXXXXXXXXXFSTL 197 FSVLIL+ YF +IP+EL++AA +DGCN F+AF+R FS L Sbjct: 151 DATIGIPFSVLILKNYFGSIPKELEDAASIDGCNRFSAFLRIFVPIALPGVVVCAIFSFL 210 Query: 198 FAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMAFGVVSVLPIILLFTFLQKY 257 +AW DL Y TFI Q P+T+G+FNFM +YGT+W+ + AF VV+++P+ L+F F+QKY Sbjct: 211 YAWGDLAYGMTFIQDQVNRPITAGIFNFMGQYGTKWSYLTAFAVVTIIPVALIFIFMQKY 270 Query: 258 IISGLTNGAIKG 269 IISGLT GA+KG Sbjct: 271 IISGLTAGAVKG 282 >Q65EZ6.1 Q65EZ6_BACLD YurM Length = 273 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/270 (46%), Positives = 179/270 (66%), Gaps = 8/270 (2%) Query: 2 LYNLAAALICIVFLFPLYWMIITSFKTELEIFQTPISFFP---KSINFNAYFEQVREDYN 58 L+N+ L+ FLFP+YWMI T+FK++ E+F+TP +P ++ F A F Y Sbjct: 9 LFNIIGVLVTAGFLFPVYWMIATAFKSDAELFKTPPLLWPETFRTAGFEAVFTSGVAGY- 67 Query: 59 IFRNFLNSIIISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPL 118 FLNS++ISGAA VI + L++P+AY LARFR KG+K+ IL FLITQMLP ++ LTPL Sbjct: 68 ----FLNSLLISGAAAVIVLILAVPSAYGLARFRIKGKKMFILLFLITQMLPATVVLTPL 123 Query: 119 FIIFKNMGLYNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVR 178 FI F + + NTY+ FSVL+LRT+F+ IP++L++AAK+DGC+ FTAF+R Sbjct: 124 FIAFNQLNILNTYIGPILTGATLGVPFSVLMLRTFFLGIPKDLEDAAKIDGCSRFTAFIR 183 Query: 179 XXXXXXXXXXXXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMA 238 S F W DL+Y+ TF Q +WP+T+G++N + +YG QWN++MA Sbjct: 184 IILPISVPGIAVSGAVSFFFTWGDLIYSMTFNRNQELWPLTAGIYNVISQYGIQWNDLMA 243 Query: 239 FGVVSVLPIILLFTFLQKYIISGLTNGAIK 268 F V+SVLP+I++F LQK ++ GL NG+IK Sbjct: 244 FAVLSVLPVIIIFMLLQKQLVKGLINGSIK 273 >A6LXF8.1 A6LXF8_CLOB8 Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 123/262 (46%), Positives = 176/262 (67%), Gaps = 2/262 (0%) Query: 10 ICI--VFLFPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQVREDYNIFRNFLNSI 67 IC+ + LFP+YW+I++SFKT EIF +P +F PK ++Y +Q +I NS Sbjct: 20 ICVACIMLFPIYWIIVSSFKTNAEIFASPPTFIPKDFTLSSYTDQFTGKSSIIVTLANSC 79 Query: 68 IISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKNMGL 127 ++ A+M++A L+IPAAY LARFR +G+K+ IL FL+TQMLP +L LTP+F+++KN+ L Sbjct: 80 KVALASMILACVLAIPAAYGLARFRMRGKKVFILIFLVTQMLPVALLLTPMFLVYKNLHL 139 Query: 128 YNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXXXXX 187 +T F VLILRTYF+ +P+EL+++AK+DGCN FTAF + Sbjct: 140 LDTLWAPILSDATISVPFVVLILRTYFLALPKELEDSAKIDGCNTFTAFTKIMIPISYPG 199 Query: 188 XXXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMAFGVVSVLPI 247 FS L+AW DL Y+ TF+ +T+ ++NFM +YG QWN++MA+GV+ VLP+ Sbjct: 200 LIMTGAFSFLYAWGDLAYSLTFLTSPEKRTMTASIYNFMGKYGIQWNSIMAYGVLLVLPV 259 Query: 248 ILLFTFLQKYIISGLTNGAIKG 269 +L+F FLQKYII GLTNGA+KG Sbjct: 260 VLIFIFLQKYIIGGLTNGAVKG 281 >C5EQZ4.1 C5EQZ4_9FIRM Transport protein Length = 280 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/271 (41%), Positives = 163/271 (60%), Gaps = 2/271 (0%) Query: 1 MLYNLAAALICIVFLFPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQ--VREDYN 58 +L+NL A + I+FLFP+YWM+ITS K+ EIF +FFP+ I Y Q VR Sbjct: 10 ILFNLIAVAVLILFLFPIYWMVITSLKSSKEIFAEVPTFFPEKIELEGYISQLFVRGSVP 69 Query: 59 IFRNFLNSIIISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPL 118 I+ +F NS II+ A VI+ L+ +AY LARF+ + V+L+ LITQMLPT L L+PL Sbjct: 70 IWVSFRNSFIIAAATTVISTLLATLSAYGLARFKLSINRAVLLAILITQMLPTVLFLSPL 129 Query: 119 FIIFKNMGLYNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVR 178 F+ FK + + +T F ++ LR YF+ IP+EL++AA +DGC F F R Sbjct: 130 FMTFKKIAILDTLAAPVIFTCLHSIPFCIITLRPYFLDIPKELEDAAIIDGCGRFQVFWR 189 Query: 179 XXXXXXXXXXXXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMA 238 F+ L+ W DLM A TFI ++P+T ++ + YG +WN++MA Sbjct: 190 VMVPITYPGIVVSAAFTFLWGWGDLMGALTFIKTDRLYPLTVNMYKAIGEYGIEWNSLMA 249 Query: 239 FGVVSVLPIILLFTFLQKYIISGLTNGAIKG 269 F V+ +P++L+F LQKY+I+G+T GA+KG Sbjct: 250 FAVILTIPVLLIFICLQKYLITGITAGAVKG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,291,948,312 Number of extensions: 43841218 Number of successful extensions: 219668 Number of sequences better than 1.0e-05: 5821 Number of HSP's gapped: 206299 Number of HSP's successfully gapped: 5836 Length of query: 269 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 136 Effective length of database: 1,807,701,208 Effective search space: 245847364288 Effective search space used: 245847364288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 130 (54.7 bits)