BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0003.p (184 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3FVW6.1 C3FVW6_BACTB Tyrosine recombinase 108 2e-22 C3DCD4.1 C3DCD4_BACTU Tyrosine recombinase 108 2e-22 C3HAB9.1 C3HAB9_BACTU Tyrosine recombinase 108 2e-22 Q3ETB1.1 Q3ETB1_BACTI DNA integration/recombination/inversion pr... 108 3e-22 C3IVX9.1 C3IVX9_BACTU Tyrosine recombinase 108 3e-22 >C3FVW6.1 C3FVW6_BACTB Tyrosine recombinase Length = 357 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 2/148 (1%) Query: 1 VENFLSFLDYQLGNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVK 60 VENF+ FL Q + ++NRK+S+LKSLF YL + +E D + Y RNVMAK++++ K Sbjct: 85 VENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDK 144 Query: 61 ESQETIANRIEGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLIL 120 E+ A R+ KI DD + F +V Y+ EK +++ F + ++ERD AI+SL L Sbjct: 145 ETLNARAKRMRSKIFHNDDDQEFLNYVKYE-HEKALTKHQLFYFLR-DKERDVAILSLFL 202 Query: 121 GSGLRLSEVAGINMDDLDMNKALVRVIR 148 GSG+R+SE+A + M+D+++ + L+ VIR Sbjct: 203 GSGIRVSELADLRMEDINLKERLIDVIR 230 >C3DCD4.1 C3DCD4_BACTU Tyrosine recombinase Length = 357 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 2/148 (1%) Query: 1 VENFLSFLDYQLGNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVK 60 VENF+ FL Q + ++NRK+S+LKSLF YL + +E D + Y RNVMAK++++ K Sbjct: 85 VENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDK 144 Query: 61 ESQETIANRIEGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLIL 120 E+ A R+ KI DD + F +V Y+ EK +++ F + ++ERD AI+SL L Sbjct: 145 ETLNARAKRMRSKIFHNDDDQEFLNYVKYE-HEKALTKHQLFYFLR-DKERDVAILSLFL 202 Query: 121 GSGLRLSEVAGINMDDLDMNKALVRVIR 148 GSG+R+SE+A + M+D+++ + L+ VIR Sbjct: 203 GSGIRVSELADLRMEDINLKERLIDVIR 230 >C3HAB9.1 C3HAB9_BACTU Tyrosine recombinase Length = 357 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 2/148 (1%) Query: 1 VENFLSFLDYQLGNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVK 60 VENF+ FL Q + ++NRK+S+LKSLF YL + +E D + Y RNVMAK++++ K Sbjct: 85 VENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDK 144 Query: 61 ESQETIANRIEGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLIL 120 E+ A R+ KI DD + F +V Y+ EK +++ F + ++ERD AI+SL L Sbjct: 145 ETLNARAKRMRSKIFHNDDDQEFLNYVKYE-HEKALTKHQLFYFLR-DKERDVAILSLFL 202 Query: 121 GSGLRLSEVAGINMDDLDMNKALVRVIR 148 GSG+R+SE+A + M+D+++ + L+ VIR Sbjct: 203 GSGIRVSELADLRMEDINLKERLIDVIR 230 >Q3ETB1.1 Q3ETB1_BACTI DNA integration/recombination/inversion protein Length = 358 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 97/148 (65%), Gaps = 2/148 (1%) Query: 1 VENFLSFLDYQLGNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVK 60 VENF+ FL Q + ++NRK+S+LKSLF YL + +E D + Y RNVMAK++++ K Sbjct: 85 VENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDK 144 Query: 61 ESQETIANRIEGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLIL 120 E+ A R+ KI DD + F ++ Y+ EK +++ F + ++ERD AI+SL L Sbjct: 145 ETLNARAKRMRSKIFHNDDDQEFLNYIKYE-HEKSLTRHQLFYFLR-DKERDVAILSLFL 202 Query: 121 GSGLRLSEVAGINMDDLDMNKALVRVIR 148 GSG+R+SE+A + M+D+++ + L+ VIR Sbjct: 203 GSGIRVSELADLRMEDINLKERLIDVIR 230 >C3IVX9.1 C3IVX9_BACTU Tyrosine recombinase Length = 358 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 97/148 (65%), Gaps = 2/148 (1%) Query: 1 VENFLSFLDYQLGNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVK 60 VENF+ FL Q + ++NRK+S+LKSLF YL + +E D + Y RNVMAK++++ K Sbjct: 85 VENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDK 144 Query: 61 ESQETIANRIEGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLIL 120 E+ A R+ KI DD + F ++ Y+ EK +++ F + ++ERD AI+SL L Sbjct: 145 ETLNARAKRMRSKIFHNDDDQEFLNYIKYE-HEKSLTRHQLFYFLR-DKERDVAILSLFL 202 Query: 121 GSGLRLSEVAGINMDDLDMNKALVRVIR 148 GSG+R+SE+A + M+D+++ + L+ VIR Sbjct: 203 GSGIRVSELADLRMEDINLKERLIDVIR 230 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 894,473,151 Number of extensions: 33004334 Number of successful extensions: 93106 Number of sequences better than 1.0e-05: 196 Number of HSP's gapped: 92945 Number of HSP's successfully gapped: 196 Length of query: 184 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 57 Effective length of database: 1,864,227,298 Effective search space: 106260955986 Effective search space used: 106260955986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)