BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0029.p (312 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7X1.1 B1D7X1_9BACL Binding-protein-dependent transport system... 421 e-116 B1DGY7.1 B1DGY7_9BACL Binding-protein-dependent transport system... 405 e-111 B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport system... 402 e-110 Q9KBL4.1 Q9KBL4_BACHD Transmembrane lipoprotein 387 e-106 Q5WIY1.1 Q5WIY1_BACSK Polysaccharide ABC transporter permease 382 e-104 >B1D7X1.1 B1D7X1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/299 (67%), Positives = 246/299 (82%) Query: 13 AKQSLQAKAPQDRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQF 72 +K+ L DR+L + VY + V ++T+YPFLNVLA+S NDSVD+VRGGIT++PR F Sbjct: 3 SKRLLGGAPLSDRLLSVFVYVFVIFVMIITLYPFLNVLALSFNDSVDSVRGGITIFPRDF 62 Query: 73 TLDNYSLIFTYGSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAV 132 T +NY +IF++G LITGFKIS LRTV GTI GL+S SMLA+TL+R DFQ R+F+S+FLA+ Sbjct: 63 TTENYKVIFSFGGLITGFKISVLRTVAGTIVGLISASMLAFTLSRPDFQGRKFVSVFLAL 122 Query: 133 TMYVTGGLIPGFILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDG 192 TMYV+GGLIP + L++DLH++ TF VYILPGLVSAFNVFVIRSF+DG+PYALQESAKLDG Sbjct: 123 TMYVSGGLIPVYFLIRDLHMMGTFWVYILPGLVSAFNVFVIRSFMDGIPYALQESAKLDG 182 Query: 193 ANDFTIYWRVILPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQS 252 ANDFTIYWR+ILP+ KPALAT+ALFLAVGQWNSWFDTYL+NGS ESLTTLQ+ELMK+LQS Sbjct: 183 ANDFTIYWRIILPMAKPALATIALFLAVGQWNSWFDTYLYNGSKESLTTLQFELMKVLQS 242 Query: 253 TTTSASNSQDAANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVK 311 TT+ + +NM + MS +SPESVKMA YPFLQ+YFVKGMTLGAVK Sbjct: 243 TTSGNNVDIHNSNMTQMMSSVSPESVKMAITIVVTVPILVVYPFLQRYFVKGMTLGAVK 301 >B1DGY7.1 B1DGY7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 204/291 (70%), Positives = 241/291 (82%), Gaps = 3/291 (1%) Query: 24 DRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY 83 +R+ ++IVY +++V V T+YPFLNVLAISLNDS DTVRGGITV+PR T DNYSLIF++ Sbjct: 9 NRLFDVIVYLVISLVAVCTLYPFLNVLAISLNDSTDTVRGGITVFPRHLTFDNYSLIFSF 68 Query: 84 GSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPG 143 L+TG KIS LRT+ GT+ GL+S SMLAY L+R++F R+F+S+FLA+TMYV+GGLIP Sbjct: 69 AGLLTGLKISVLRTLAGTVLGLISSSMLAYVLSRAEFDGRKFLSMFLALTMYVSGGLIPF 128 Query: 144 FILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 203 ++LM+D+HLI TF VY+LPGLVSAFNVF+IRSFIDGLPYALQESAKLDGANDFTIYWRVI Sbjct: 129 YLLMRDMHLIGTFWVYVLPGLVSAFNVFIIRSFIDGLPYALQESAKLDGANDFTIYWRVI 188 Query: 204 LPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQD- 262 LPL PALATVALFLAVGQWNSWFDTYL+NGS E LTTLQ+ELMK+LQST SN Q+ Sbjct: 189 LPLLLPALATVALFLAVGQWNSWFDTYLYNGSKEHLTTLQFELMKVLQSTQV-GSNGQEV 247 Query: 263 -AANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 NM + M++ISPESVKMA YPFLQ+YFV GMTLGAVKS Sbjct: 248 NGMNMNQVMNRISPESVKMAITIIVTVPILLVYPFLQRYFVTGMTLGAVKS 298 >B3KDQ6.1 B3KDQ6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/289 (65%), Positives = 232/289 (80%) Query: 24 DRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY 83 DR+ +I + M +V ++T+YPFLNVLAISLNDSVDTVRGGI +WPR+FTLDNY IF Y Sbjct: 14 DRVFDIANFTIMALVMIVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLDNYVQIFKY 73 Query: 84 GSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPG 143 L+TG K + LRT+ GT GL+SG+ML Y L+R DFQ R+F+S FLA+TMY +GG+IP Sbjct: 74 DGLVTGAKNTILRTLAGTFLGLLSGTMLGYVLSRVDFQGRKFMSTFLALTMYFSGGMIPV 133 Query: 144 FILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 203 FIL++DL+++++F VYI+PG+VSAFNVFVIRSFID LPY+LQESAKLDGANDFTIY+++I Sbjct: 134 FILIRDLNMMNSFLVYIIPGMVSAFNVFVIRSFIDSLPYSLQESAKLDGANDFTIYYKII 193 Query: 204 LPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQDA 263 LPLCKP LAT+ALFLAVGQWNSW DTYL+NG+ LTTLQ+ELMK+LQST S Sbjct: 194 LPLCKPVLATIALFLAVGQWNSWLDTYLYNGNAPHLTTLQFELMKVLQSTQGQTSGMMTG 253 Query: 264 ANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 NMAE + Q+SPES+KMA YPFLQ+YFVKGMTLGAVKS Sbjct: 254 QNMAEIVKQVSPESIKMAITIVVTVPILLVYPFLQRYFVKGMTLGAVKS 302 >Q9KBL4.1 Q9KBL4_BACHD Transmembrane lipoprotein Length = 297 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 180/291 (61%), Positives = 237/291 (81%), Gaps = 2/291 (0%) Query: 24 DRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY 83 DR+ + Y +T+V ++T+YPFLNVLAISLNDSVDTVRGGI +WPR+FTL+NY +IF Y Sbjct: 7 DRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLENYRVIFEY 66 Query: 84 GSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPG 143 L+TGF S LRTVIGT+ G+ S +M+A+TL+R DFQAR+F+S + +T+Y +GGLIPG Sbjct: 67 DHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSGGLIPG 126 Query: 144 FILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 203 ++L+++L+LI+TF VY+LPG+V+AF++ ++RSF+DGLPY+LQESAK+DGANDFTI+WR+I Sbjct: 127 YMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTIFWRII 186 Query: 204 LPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSAS--NSQ 261 LPLC P LAT+ALF+AVGQWN+WFDTYL+N SN +LTTLQYELMKILQ+TT SAS N+ Sbjct: 187 LPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMSASDANAF 246 Query: 262 DAANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 + + +SPES+KMA YPF+Q++FVKGMTLGAVKS Sbjct: 247 RGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVKS 297 >Q5WIY1.1 Q5WIY1_BACSK Polysaccharide ABC transporter permease Length = 304 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/292 (60%), Positives = 234/292 (80%), Gaps = 3/292 (1%) Query: 24 DRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY 83 D + +I Y +T+V + T+YPFLNVLAISLNDS DTVRGGI +WPR++TL+NY IF Y Sbjct: 13 DGLFNVINYCFLTIVFLATLYPFLNVLAISLNDSTDTVRGGIYIWPREWTLENYRTIFQY 72 Query: 84 GSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPG 143 L+TGF S LRT+IGT+ G+ S +M+A+TL+R+DFQ R+F+S L +T+Y TGGLIPG Sbjct: 73 DHLVTGFINSVLRTIIGTVLGIFSSAMVAFTLSRADFQGRKFVSTMLVLTLYFTGGLIPG 132 Query: 144 FILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 203 ++LM++L+LI+TF VY+LPG+V+AF++ ++RSF+DGLPY+LQESAK+DGANDFTI+WR+I Sbjct: 133 YMLMRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKMDGANDFTIFWRII 192 Query: 204 LPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQDA 263 +PLC P LAT+ALF+AVGQWN+WFDTYL+NGSN LTTLQYELMKILQ+TT S +A Sbjct: 193 MPLCTPVLATIALFVAVGQWNAWFDTYLYNGSNPDLTTLQYELMKILQNTTMGGSGDANA 252 Query: 264 AN--MAERMSQ-ISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 ++ +Q +SPES+KMA YPFLQ++FV+GMTLGAVKS Sbjct: 253 YRSISGDQAAQTVSPESIKMAISMVTVVPILLVYPFLQRFFVQGMTLGAVKS 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,565,393,890 Number of extensions: 59391879 Number of successful extensions: 234413 Number of sequences better than 1.0e-05: 5522 Number of HSP's gapped: 229388 Number of HSP's successfully gapped: 5523 Length of query: 312 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 177 Effective length of database: 1,788,859,178 Effective search space: 316628074506 Effective search space used: 316628074506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)