BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0021.p (1658 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I0Y0.1 B8I0Y0_CLOCE Sugar-binding domain protein 1189 0.0 C1WNL6.1 C1WNL6_9ACTO Putative uncharacterized protein 559 e-157 C4G3Y3.1 C4G3Y3_ABIDE Putative uncharacterized protein 404 e-110 B1D8H3.1 B1D8H3_9BACL NEAr transporter 186 3e-44 B1DGS5.1 B1DGS5_9BACL S-layer domain protein 180 1e-42 >B8I0Y0.1 B8I0Y0_CLOCE Sugar-binding domain protein Length = 2375 Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 634/1320 (48%), Positives = 847/1320 (64%), Gaps = 83/1320 (6%) Query: 46 LQIVESKVQGEDSLDLSQVGNVDWLHLKGNGPDQMVQIRKAVSSSVTFSVYGNDTTGTEG 105 L + +S++ G ++DL+ VG+VDWLHL+G+G + ++QI+K +++TFS N T EG Sbjct: 580 LNVTQSQINGVYNVDLTAVGDVDWLHLRGDGSNNIIQIKKNTQNAITFSALQN--TVPEG 637 Query: 106 KPDRGGDANYLSYSWDDGMAGYERAVKDTGFGVFFPKNRDSGK---YENVGWTFRVSPQP 162 K + GD N + SW DGM+GYE DTGFGVF P + D G NVGW F ++ QP Sbjct: 638 K-ETNGDTNRTAASWTDGMSGYEALANDTGFGVFLPLSDDRGAGACKANVGWNFTIAAQP 696 Query: 163 QESTVVFGIGLWQAKAAVKIYADMNLIETKDVSAGGTSEVYKYQIKVPAHVELKVEGLQA 222 +TVVF GLWQAK V Y D + TK + AGGT++ +KYQ+ VPA+ LKV GLQ Sbjct: 697 TSTTVVFSTGLWQAKVNVNFYLDDLYVSTKSMEAGGTAQAFKYQVVVPANKVLKVVGLQT 756 Query: 223 ETLSRYGNMSFSGLAVSSKQLADKSILQNAYNQVKDRLQGVYTDESWQEFVKARDAAKGI 282 + GN S S +AVSS+++ADKS LQ Y++ Q +TD SW F+ AR AAK + Sbjct: 757 YKNAYDGNSSLSTIAVSSQEIADKSSLQAFYDEFSGITQSFFTDASWTNFIDARTAAKAV 816 Query: 283 LEKADADQAEIDSXXXXXXXXXXXXVRRDTNLMIDYTGAAE-NEYEFGGSGDQQDRYQTF 341 LEKA QAE+D+ V++DTN+MIDYTG + Y G D+QDRYQTF Sbjct: 817 LEKAVVTQAEVDNAKAALILAQNNLVKKDTNVMIDYTGGKRGSSYGLGNLVDEQDRYQTF 876 Query: 342 TVADSFDMQYVQVNVRKMSNNVSDLTAKLYETDHSGLPAGAPLAETTVARDHVTDGDMTT 401 T ++ F M+YVQV + K S++ SDL KLY TD++GLP G+PLA+TTV + V +G +TT Sbjct: 877 TSSEDFIMEYVQVGLYKNSDDGSDLVVKLYATDNNGLPTGSPLAQTTVNKKDVINGGLTT 936 Query: 402 IPLSYTLAGNTRYALVLSQKNLFSGKYRWMVMKKNGETAGEYFGKSISGVFKSEAHLGTG 461 L Y + NTRYA+ ++Q L +G Y W+VM+KN + E+FGK SG F EA LGTG Sbjct: 937 AKLVYDVKANTRYAIDVTQTTLKNGMYNWIVMQKNHYSKNEFFGKITSGKFVPEAWLGTG 996 Query: 462 ILRIIKKSDTDRTALQALVNEITDHNYNSKLYTVQSWSALEAALHHAKLRLNDFDAKQEE 521 +LR++KK + DR+AL+ALV+E++ N N K+YTV+SW L A A+ LN+FDA Q E Sbjct: 997 LLRVVKKINVDRSALEALVSEVS--NLNEKIYTVESWLHLANAAEEARNCLNNFDALQAE 1054 Query: 522 INAAYSQLLTARDNLKINMDMSAIAGQVDKISRAVIKGYTISSLNALNEXXXXXXXXXXX 581 I+A +L A+D+L IN+++S + + V+KGYT +S+ L + Sbjct: 1055 IDAETGKLQAAKDSLVININISDFSSFISSFDNMVVKGYTDASVAILTDAITNAKQLDIS 1114 Query: 582 XSETDKLAAYSAVLEAVHNLKVSGKYKYETNEQMTAAFGFEGDKNASLAFLDGSYQIGGS 641 S+ +KL AY +VL A+ L+VSGKY ET+ +T +FGFEGD NA +AF+DGS+++ Sbjct: 1115 ASDDEKLQAYVSVLNAIAKLQVSGKYSSETDGGLTGSFGFEGDMNAPIAFIDGSFRL--- 1171 Query: 642 RPEQHGPVAPKQLVTFGVTDTS----SIKWTKGEGYLPEFISEYTKNKVDYKIETFANKH 697 P ++ FGVT SI W +GYLP ++SEYT + V YKIE FANKH Sbjct: 1172 ------PSRGNLMIRFGVTGLKAKGVSIDWYNRDGYLPCYVSEYTVDDVTYKIEEFANKH 1225 Query: 698 TVDNKDYVINYSRITAANRSNEIMLLPVVSGNLVPLNAAAINTYTVEPGESIVREYAIEA 757 T+D + Y ++TA N S+E LLPVVS LVPLN AA ++Y + GE++VREYAI+A Sbjct: 1226 TIDGNPVEVAYVKMTAINNSSEKRLLPVVSKELVPLNNAAESSYVINAGETVVREYAIKA 1285 Query: 758 DKYEY-----------------FDKNVTQFTSLTKEQVAGLGS---FEANYGEMKAYWLT 797 D++E D+ + + + VA +G FE NY MK YW Sbjct: 1286 DRFENEGHTGERHEVEPKAPFPADQKILE----AAKAVADIGENSIFENNYASMKTYWDD 1341 Query: 798 RLSKVVDIRLPNQE-------LVNAFKSGYIDTMIIKDDTYLHVGENGYARLFSHDTLGI 850 RL+ ++DI++PN + LVNA+K+GYI T+IIKD T+LHVGENGY RLFSHDT+GI Sbjct: 1342 RLAGIIDIKMPNSKDANNKDSLVNAYKAGYIYTLIIKDQTFLHVGENGYDRLFSHDTIGI 1401 Query: 851 LVNLIQSGDFAHAQDYLKSIPLTGGINIETGQVDSNLYWDTNWKIPWAYAVYLSKTGDAS 910 L +LI +GDF A+DYL+S+P+TGGINIE G+VD +LYWD NWK+PWAY+VYLSKTGD Sbjct: 1402 LQSLITAGDFVEAKDYLESVPMTGGINIENGEVDPDLYWDANWKLPWAYSVYLSKTGDID 1461 Query: 911 IFDEQMTADDGTSGTVFEKRVKFGARTIESDR---NADGIMKKTYAIDSEGNWTIDNYSA 967 E+ +E +K A +I DR N DGIMK T AID+ G WT+D+ +A Sbjct: 1462 FIKEK-----------YEGVLKKMAHSIHDDRTGPNHDGIMKSTLAIDTYGQWTVDDQAA 1510 Query: 968 LTGLTAYEYLTRELYRLKND----EYYLHEAEWAKARYDDLLAKFTAKLQQTITDKGLDY 1023 L GL AY+Y+ EL +ND EYYL EA+WA A YD LL T L+ TI L+Y Sbjct: 1511 LMGLIAYKYICNELAIKENDQSKKEYYLAEAQWANAEYDSLLKVVTETLENTINRNNLNY 1570 Query: 1024 IPASVVETNDENRMRDSRDANWASMFLFGRWHWDGYLYGAEQPEDNINLKLLDDTYTYGI 1083 IPAS+VE N NR D RD NWASM LFG + WDGYLYGA+Q + N+ ++D TY YGI Sbjct: 1571 IPASIVEPNTANRCNDIRDGNWASMLLFGSFPWDGYLYGADQSKAGANIDMIDQTYAYGI 1630 Query: 1084 NRRIQEDTTDSPYNFGGYPHXXXXXXXXXXXXXXXLRGEEYRDMGIKAYEFMIENSMSGP 1143 RR ++ SPYNFGGYPH LRGE YRD+GIKAYEF + ++MS P Sbjct: 1631 ERR-KDLPGASPYNFGGYPHGWYSSAYNAGYGISALRGEAYRDIGIKAYEFAVNSAMSSP 1689 Query: 1144 FSWWEGI-----NYPVAGSPWAQTNDHLNLQNAPGGGGSAQHMWGQSVNSKVLIDSLVAE 1198 F WWEG+ +YP + P T+ N NA GGGGS QHMWGQ+ SKVL D+ +AE Sbjct: 1690 FGWWEGVGPGGNDYP-SQDP---TSPLWNRDNASGGGGSCQHMWGQATASKVLYDAFIAE 1745 Query: 1199 KIYDHNQKIDIIVGRGIPKEWVIDAGN-NNAVASVQNYPALQGGRVGYSVVRKDNQLVVT 1257 +IY+ N+ +II+GRGIPKEWV +A N NN VA+V+NYP LQGGR GY++VR + L +T Sbjct: 1746 RIYNDNKNAEIIIGRGIPKEWVTNATNENNVVAAVENYPILQGGRAGYTIVRNGSNLKIT 1805 Query: 1258 FNSDLKQAKIEASEV-SFSVQLPSMVNNITAVSTGVMDNEKGIVTVPLNTASVTITLGDL 1316 F+ + +K++A V +S+QLP+MVNNI++ S G +DN GIV VP++T VTI L DL Sbjct: 1806 FDCNKTNSKVDAGTVEQWSIQLPAMVNNISSASVGTVDNANGIVNVPIDTKEVTIVLKDL 1865 Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/333 (40%), Positives = 190/333 (57%), Gaps = 16/333 (4%) Query: 1 MLRIPIKKMTAVFVLVSLVITSASLGQPKVAYXXXXXXXXXXXXXLQIVESKVQGEDSLD 60 M + I KM AV V V +++++ + Q +AY L I ES+V GE + Sbjct: 1 MSKKVIMKMVAVVVSVCMLLST--VFQSGIAYAAEDASN------LVISESQVSGEYKFN 52 Query: 61 LSQVGNVDWLHLKGNGPDQMVQIRKAVS--SSVTFSVYGNDTTGTEGKPDRGGDANYLSY 118 L+QVG++DWLHLKG+G + +VQI+K + S+++F++ N EGK G D + ++ Sbjct: 53 LTQVGDIDWLHLKGDGSNGIVQIKKDTTNPSAISFNILPNSVP--EGKVSNG-DPDRIAN 109 Query: 119 SWDDGMAGYERAVKDTGFGVFFPK--NRDSGKY-ENVGWTFRVSPQPQESTVVFGIGLWQ 175 +W DGMAGYE DTGF V P NR +G ENVGW F V QP ++TV+F +GLWQ Sbjct: 110 TWSDGMAGYESGTDDTGFAVLLPPADNRGAGTCTENVGWNFSVQAQPVQTTVIFTLGLWQ 169 Query: 176 AKAAVKIYADMNLIETKDVSAGGTSEVYKYQIKVPAHVELKVEGLQAETLSRYGNMSFSG 235 A V Y D ++TK++SAGG + +KYQ+ VPA+ LKVEG+Q + L + GN S S Sbjct: 170 ANVGVNFYMDDVQVDTKNISAGGGALTFKYQVTVPANKVLKVEGIQTDILWQDGNSSISS 229 Query: 236 LAVSSKQLADKSILQNAYNQVKDRLQGVYTDESWQEFVKARDAAKGILEKADADQAEIDS 295 +AVSS L DK +Q YN VKD +QG YT+E+W F AR A+ +L+ A Q +D+ Sbjct: 230 IAVSSAVLVDKEAIQTLYNNVKDIVQGSYTEETWTVFESARTTAQAVLDDPSATQDMVDN 289 Query: 296 XXXXXXXXXXXXVRRDTNLMIDYTGAAENEYEF 328 V + N + EY+F Sbjct: 290 AKTALEQAQAALVTNNANELKITQSQVSGEYKF 322 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 120/273 (43%), Positives = 167/273 (61%), Gaps = 8/273 (2%) Query: 46 LQIVESKVQGEDSLDLSQVGNVDWLHLKGNGPDQMVQIRKAVS--SSVTFSVYGNDTTGT 103 L+I +S+V GE +L+QVG++DWLHLKG+G + +VQI+K + S+++F++ N Sbjct: 309 LKITQSQVSGEYKFNLTQVGDIDWLHLKGDGSNGIVQIKKDTTNPSAISFNILPNSVP-- 366 Query: 104 EGKPDRGGDANYLSYSWDDGMAGYERAVKDTGFGVFFPK--NRDSGKY-ENVGWTFRVSP 160 EGK G D + ++ +W DGMAGYE DTGF V P NR +G ENVGW F VS Sbjct: 367 EGKVSNG-DPDRIAKTWSDGMAGYESGTDDTGFAVLSPPVDNRGAGTCTENVGWNFTVSA 425 Query: 161 QPQESTVVFGIGLWQAKAAVKIYADMNLIETKDVSAGGTSEVYKYQIKVPAHVELKVEGL 220 QP ++TV+F +GLWQA V Y D ++TK++SAGG + +KYQ+ VPA+ LKVEG+ Sbjct: 426 QPVQTTVIFTLGLWQANVGVNFYMDDVQVDTKNISAGGGALTFKYQVTVPANKVLKVEGI 485 Query: 221 QAETLSRYGNMSFSGLAVSSKQLADKSILQNAYNQVKDRLQGVYTDESWQEFVKARDAAK 280 Q + L + GN S S +AVSS DK LQ YN VKD +QG YT+E+W F AR A+ Sbjct: 486 QTDILWQDGNSSISSIAVSSVVPVDKEALQTLYNNVKDIVQGSYTEETWTVFESARTTAQ 545 Query: 281 GILEKADADQAEIDSXXXXXXXXXXXXVRRDTN 313 +L+ A Q +D+ V + N Sbjct: 546 AVLDDPSATQTLVDNAKTSLEQAQAALVTNNAN 578 Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 18/183 (9%) Query: 1481 FKDIDKH-WAKENILAAVERNIVKGYEDGTFRPDGEVTRSEFAVILG-----RALKANLE 1534 F D+ W ++ + R +V G DG F P +VTR++F +++ RA KA E Sbjct: 2195 FTDVKADAWYEKAVGFLAAREMVSGTGDGRFAPQNKVTRADFLIMVMNSYGIRADKAVTE 2254 Query: 1535 QAGLSFKDEGSIPSWAKPYIANAVQSGWITGYTDQTFRPDGKITRLEMIAMIVRALDWKP 1594 +F D GS + Y+ A + G ++G D + P+ I+R +M+ ++ RALD Sbjct: 2255 ----NFSDAGS--KYYTGYLGTAKRLGLVSGTGDNKYMPEAAISRQDMLVILYRALDILG 2308 Query: 1595 D-PKAKA----PFTDAERIPAWGQPYAAAAYDAGLIEGKDNNRLAPNDQATRAEAITMVL 1649 + P AK F D + I + + AG++ G D +L P +RAEA+ ++ Sbjct: 2309 ELPDAKTGNFDSFIDTKDISGYAENAMKLFVKAGIVIGND-KQLNPKSDTSRAEAVQVMY 2367 Query: 1650 RLI 1652 L+ Sbjct: 2368 NLL 2370 >C1WNL6.1 C1WNL6_9ACTO Putative uncharacterized protein Length = 1149 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 311/719 (43%), Positives = 424/719 (58%), Gaps = 83/719 (11%) Query: 606 KYKYETNEQMTAAFGFEGDKNASLAFLDGSYQIGGSRPEQHGPVAPKQLVTFGVTDTSS- 664 +Y TN +T++FG+EGD +A +AF+DGSY++ SR + ++TFGV + Sbjct: 499 EYTSVTNPGLTSSFGWEGDLHAPIAFIDGSYRLR-SRGDA--------MITFGVANVPGK 549 Query: 665 IKWTKGEGYLPEFISEYTKNKVDYKIETFANKHTVDNKDYVINYSRITAANRSNEIMLLP 724 IKW EGYLP F+SEY K+ + KIE FA+ V + + YSR+T N ++ LP Sbjct: 550 IKWYNAEGYLPAFVSEYAKDGLTVKIENFADLVVVGGNRFEVAYSRMTVTNTTSAPARLP 609 Query: 725 VVSGNLVPLNAAAINTYT-VEPGESIVREYAIEADKYEYFDKNVTQFTSLTKEQVAGLGS 783 VS L PLNAAA T + G+++VR+YA+ AD++ + T Q+ LG Sbjct: 610 RVSSLLTPLNAAAAPAVTTIGAGQTVVRDYAVAADRFG------GTYEWPTTGQLRQLGG 663 Query: 784 FEANYGEMKAYWLTRLSKVVDI-RLPNQELVNAFKSGYIDTMIIKDDT----YLHVGENG 838 F +Y M+ YW +RLS + DI LP+Q LVNA+K+GYI T+II+DD LHVGENG Sbjct: 664 FAKHYAHMRDYWNSRLSAIADITELPDQRLVNAYKAGYIYTLIIRDDIGTEKRLHVGENG 723 Query: 839 YARLFSHDTLGILVNLIQSGDFAHAQDYLKSIPLTGGINIETGQVDSNLYWDTNWKIPWA 898 Y +F HDT+GI+ L+ GDF++A+DYL ++P Q+ Y D WK W Sbjct: 724 YDEMFDHDTIGIVATLLTIGDFSYARDYLATLP---------AQLQ---YDDAKWKYSWP 771 Query: 899 YAVYLSKTGDASIFDEQMTADDGTSGTVFEKRVKFGARTIESDR--NADGIMKKTYAIDS 956 YA+YL +TGD + Q FE +K TIE+DR GI+K+T+AIDS Sbjct: 772 YALYLQRTGDKNFVRSQ-----------FET-IKKHTHTIETDRVDGGTGIIKQTFAIDS 819 Query: 957 EGNWTIDNYSALTGLTAYEYLTRELYRLKNDEYYLHEAEWAKARYDDLLAKFTAKLQQTI 1016 G+WTIDN+SAL GLT Y YL L + EA WA+A YDDLL TA+++QT+ Sbjct: 820 LGHWTIDNWSALAGLTTYRYLATALGETQ-------EAAWAQAEYDDLLRVATARIEQTM 872 Query: 1017 TDKGLDYIPASVVETNDENRMRDSRDANWASMFLFGRWHWDGYLYGAEQPEDNINLKLLD 1076 + LDY+P S+VE N+ +D RDANWASMFLFGRW WDGYL+GA Q +D Sbjct: 873 REHDLDYLPISMVEPNETGPRKDPRDANWASMFLFGRWAWDGYLFGARQ--TGTMFDKID 930 Query: 1077 DTYTYGINRRIQEDTTDSPYNFGGYPHXXXXXXXXXXXXXXXLRGEEYRDMGIKAYEFMI 1136 DTYT+G RR +D ++S YNFGGYPH LRGE+YRD+GIKAY++M+ Sbjct: 931 DTYTHGFERR--KDVSESIYNFGGYPHGYYSSAYNAGYGSAALRGEQYRDVGIKAYQYMV 988 Query: 1137 ENSMSGPFSWWEGINYPVAGSPWAQTNDHLNLQNAPGGGGSAQHMWGQSVNSKVLIDSLV 1196 + +MSGPF WWEG++YP AGSPW ++ +A GGGGS QHMWGQS +KVL D+L+ Sbjct: 989 DKTMSGPFGWWEGVDYPSAGSPW-------DIDHARGGGGSNQHMWGQSTATKVLFDALI 1041 Query: 1197 AEKIYDHNQKIDIIVGRGIPKEWVIDAGNNNAVASVQNYPALQGGRVGYSVVRKDNQLVV 1256 A+K +I+GRG+P EWV ++ YP GGRVGY + + + Sbjct: 1042 AQK-----ADGTVIIGRGVPNEWV----RTRQKIALGRYPVGDGGRVGYRMTTSGRNVSI 1092 Query: 1257 TFNSDLKQAKIEASEVSFSVQLPSMVNNITAVST--GVMDNEKGIVTVPLNTASVTITL 1313 D+++ ++SV+LP++ N+ VS +D G V VP T VTITL Sbjct: 1093 QLTGDVREV------AAYSVELPALKGNVAHVSVRGATVDQAAGTVRVPSGTRHVTITL 1145 >C4G3Y3.1 C4G3Y3_ABIDE Putative uncharacterized protein Length = 774 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 373/710 (52%), Gaps = 80/710 (11%) Query: 608 KYETNEQMTAAFGFEGDKNASLAFLDGSYQIGGSRPEQHGPVAPKQLVTFGVTDTSSIKW 667 K E + + G++GDK+ +A+++G Y I S+ V L++ GV W Sbjct: 3 KIEVDTSKASVIGWDGDKDGVIAYMEGGYYIRDSKN-----VTVDFLISRGV---EHFDW 54 Query: 668 TKGEGYLPEFISEYTKNKVDYKIETFANKHTVDNKDYVINYSRITAANRSNE-IMLLPVV 726 EGYLP I+E+ K KI F +K V +D+V YSR++ N++ + I+LLP Sbjct: 55 YNSEGYLPCLITEFEKKGCIVKILNFCDKVRVKGEDFVAVYSRVSIENKTKQDIVLLPEP 114 Query: 727 SGNLVPLNAAAINTYTVEPGESIVREYAIEADKYEYFDKNVTQFTSLTKEQVAGLGSFEA 786 G ++ LN A ++ GES +Y I AD+ + E++ GLG FE Sbjct: 115 VGPVISLNKA---EEKIKAGESTNFDYVIAADRLG------GEQGWPEDEEMVGLGGFEL 165 Query: 787 NYGEMKAYWLTRLSKVVDIR-LPNQELVNAFKSGYIDTMIIKDDTYLHVGENGYARLFSH 845 +Y MK YW RL K+V ++ LP+ L+ A+K+G+I T I+KD +L+VGENGY +F H Sbjct: 166 HYKRMKVYWDDRLDKIVRLKELPDSRLIEAYKAGFIYTHIVKDGYHLNVGENGYDEVFDH 225 Query: 846 DTLGILVNLIQSGDFAHAQDYLKSIPLTGGINIETGQVDSNLYWDTNWKIPWAYAVYLSK 905 D +GIL+ L+ GDF A+ +L I Q+ Y D WK W +A+YL K Sbjct: 226 DAIGILIGLLTLGDFKDAKIFLDGI---------ESQIQ---YDDAKWKYAWPFALYLLK 273 Query: 906 TGDASIFDEQMTADDGTSGTVFEKRVKFGARTIESDRNA-DGIMKKTYAIDSEGNWTIDN 964 TGD +E+ +K A IE+D GI+K+T+ ID+ GNWT+DN Sbjct: 274 TGDKEFIEEKYEI------------IKGFAYKIEADLTGPGGIVKQTWDIDNIGNWTVDN 321 Query: 965 YSALTGLTAYEYLTRELYRLKNDEYYLHEAEWAKARYDDLLAKFTAKLQQTITDKGLDYI 1024 +S L GLTA++Y+ E+ K++E +WA Y LL L+ TI+ G++Y+ Sbjct: 322 WSVLMGLTAFKYIC-EILGHKDEE------KWAVKTYQKLLKACNQTLEATISRYGINYL 374 Query: 1025 PASVVETNDENRMRDSRDANWASMFLFGRWHWDGYLYGAEQPEDNINLKLLDDTYTYGIN 1084 P S+VE N EN R+ R+ NWASMFLFGRW WDGYL+GA+Q D+I +KL+D TY YG Sbjct: 375 PCSMVEPNSENVCRNPRNTNWASMFLFGRWAWDGYLFGAKQ--DSIMIKLIDATYDYGFT 432 Query: 1085 RRIQEDTTDSPYNFGGYPHXXXXXXXXXXXXXXXLRGEEYRDMGIKAYEFMIENSMSGPF 1144 R + P++FGG + LR E+YR I Y+ MI MSGP+ Sbjct: 433 R--GREAGLFPHSFGGGTYSDRIGSYNAGLAATGLRSEKYRSEAIYCYQAMISFGMSGPY 490 Query: 1145 SWWEGINYPVAGSPWAQTNDHLNLQNAPGGGGSAQHMWGQSVNSKVLIDSLVAEKIYDHN 1204 SWWE G + + G GS HMWGQ+ SK LI+S++AEK Sbjct: 491 SWWESAGEAEQGKWYG--------FHPVSGDGSCPHMWGQACASKALIESILAEK----- 537 Query: 1205 QKIDIIVGRGIPKEWVIDAGNNNAVASVQNYPALQGGRVGYSVVRKDNQLV-VTFNSDLK 1263 DIIVGRGIP+EW+ D V + NYP R+G + + + + + F+ D+ Sbjct: 538 ANGDIIVGRGIPEEWLYDG----KVIELDNYPIAGNHRIGVRIEGQAQKYIKIFFSGDIP 593 Query: 1264 QAKIEASEVSFSVQLPSMVNNITAVSTGVMDNEKGIVTVPLNTASVTITL 1313 + K F + LP M NI +V+ G ++++ G V T + I L Sbjct: 594 KGK-------FIIDLPFMKWNIISVNGGYLEDKDGTVITEGKTRKIEIEL 636 >B1D8H3.1 B1D8H3_9BACL NEAr transporter Length = 1149 Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 123/179 (68%), Gaps = 1/179 (0%) Query: 1480 KFKDIDKHWAKENILAAVERNIVKGYEDGTFRPDGEVTRSEFAVILGRALKANLEQAGLS 1539 KF DI+ HWAK NI AAV+ IV G+ DG+FRPD +V+R EFAV++ RAL+ E Sbjct: 971 KFSDINTHWAKANIEAAVKLGIVNGFTDGSFRPDNKVSRGEFAVMISRALQLEGEDTETV 1030 Query: 1540 FKDEGSIPSWAKPYIANAVQSGWITGYTDQTFRPDGKITRLEMIAMIVRALDWKPDPKAK 1599 F+D +IP+WAK +IA AV +G + G+ D TFR +++R ++ +I RA + K D Sbjct: 1031 FQDGSTIPNWAKSHIARAVAAGLMQGFADDTFRISEQLSRAQLAVIIARAANLKLDDNGS 1090 Query: 1600 APFTDAERIPAWGQPYAAAAYDAGLIEGKDNNRLAPNDQATRAEAITMVLRLIKKVEQQ 1658 A F+D++ IPAW AAA DAGLI+GKD NR APN+ ATRAEA+TM++RL+ E++ Sbjct: 1091 ASFSDSKDIPAWASKEVAAAVDAGLIQGKD-NRFAPNETATRAEAVTMIIRLLDFFEKK 1148 >B1DGS5.1 B1DGS5_9BACL S-layer domain protein Length = 343 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/175 (50%), Positives = 111/175 (63%), Gaps = 3/175 (1%) Query: 1481 FKDI-DKHWAKENILAAVERNIVKGYEDGTFRPDGEVTRSEFAVILGRALKANLE--QAG 1537 FKD+ + WAK I A IV GY DG+F+P+ VTR+EF +L RALK N Q+ Sbjct: 164 FKDVPEGFWAKSAIERAASMGIVTGYPDGSFKPNLAVTRAEFVAMLVRALKGNAGAIQSE 223 Query: 1538 LSFKDEGSIPSWAKPYIANAVQSGWITGYTDQTFRPDGKITRLEMIAMIVRALDWKPDPK 1597 L+F D GSI WAKPYIA A GW+TG+ D TFRP+ ITR EM + R L D Sbjct: 224 LNFADNGSIGGWAKPYIATAASEGWVTGFNDGTFRPNQPITRTEMTVIATRVLKLTADGS 283 Query: 1598 AKAPFTDAERIPAWGQPYAAAAYDAGLIEGKDNNRLAPNDQATRAEAITMVLRLI 1652 PF DAE I AW +PY AAA AG+I+G+ NNR AP +RAEA+T++LR+I Sbjct: 284 VAIPFKDAETIQAWAKPYIAAAVQAGIIQGQGNNRFAPAASTSRAEAVTLILRMI 338 Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Query: 1488 WAKENILAAVERNIVKGYEDGTFRPDGEVTRSEFAVILGRALKANLE-QAGLSFKDEGSI 1546 WAK I A V G+ DGTFRP+ +TR+E VI R LK + + FKD +I Sbjct: 235 WAKPYIATAASEGWVTGFNDGTFRPNQPITRTEMTVIATRVLKLTADGSVAIPFKDAETI 294 Query: 1547 PSWAKPYIANAVQSGWITGYTDQTFRPDGKITRLEMIAMIVRALDW 1592 +WAKPYIA AVQ+G I G + F P +R E + +I+R +D+ Sbjct: 295 QAWAKPYIAAAVQAGIIQGQGNNRFAPAASTSRAEAVTLILRMIDY 340 Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 15/139 (10%) Query: 1527 RALKAN---------LEQAGLSFKDEGSIPS--WAKPYIANAVQSGWITGYTDQTFRPDG 1575 ++LKAN ++ + +SFKD +P WAK I A G +TGY D +F+P+ Sbjct: 142 KSLKANEYTPNVTVYIQPSSISFKD---VPEGFWAKSAIERAASMGIVTGYPDGSFKPNL 198 Query: 1576 KITRLEMIAMIVRALDWKPDP-KAKAPFTDAERIPAWGQPYAAAAYDAGLIEGKDNNRLA 1634 +TR E +AM+VRAL +++ F D I W +PY A A G + G ++ Sbjct: 199 AVTRAEFVAMLVRALKGNAGAIQSELNFADNGSIGGWAKPYIATAASEGWVTGFNDGTFR 258 Query: 1635 PNDQATRAEAITMVLRLIK 1653 PN TR E + R++K Sbjct: 259 PNQPITRTEMTVIATRVLK 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 9,356,092,769 Number of extensions: 401232508 Number of successful extensions: 739350 Number of sequences better than 1.0e-05: 1340 Number of HSP's gapped: 734760 Number of HSP's successfully gapped: 1689 Length of query: 1658 Length of database: 3,060,696,203 Length adjustment: 150 Effective length of query: 1508 Effective length of database: 1,647,543,953 Effective search space: 2484496281124 Effective search space used: 2484496281124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 139 (58.2 bits)