BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0020.p (414 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K434.1 B3K434_9BACI Extracellular solute-binding protein family 1 319 3e-85 A7VUS5.1 A7VUS5_9CLOT Putative uncharacterized protein 188 8e-46 B0KAN3.1 B0KAN3_THEP3 Extracellular solute-binding protein, fami... 164 2e-38 B0K4K0.1 B0K4K0_THEPX Extracellular solute-binding protein, fami... 164 2e-38 Q8RBL7.1 Q8RBL7_THETN Sugar-binding periplasmic proteins/domains 158 9e-37 >B3K434.1 B3K434_9BACI Extracellular solute-binding protein family 1 Length = 415 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 247/411 (60%), Gaps = 7/411 (1%) Query: 1 MLTGLLAACASKTTNNSAEQKTNQSPAATEASEKPADPVEVTMAYWANSAEQKNFEFMVK 60 ML LA T ++ N A +A+EK V V +W + + + ++ Sbjct: 11 MLVLCLALVVGLTACGGSKSADNTDNGAGDAAEK----VTVNFGFWGTAQDLEIYQKAAD 66 Query: 61 GIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXXXXXXMSDEGNYEYIAKGVLEPLDE 120 I E+YPE+++K++QYP+S++FW MS+EG YEYI KG+ P+D+ Sbjct: 67 TISEQYPEIELKIKQYPSSEQFWNTLPGEIAAGVAPDFIKMSNEGAYEYINKGLFSPIDD 126 Query: 121 LIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITKYPETMDEM 180 L++T G D +R + K W GK YG+P +M IN++M+ +G+ +YP T DE+ Sbjct: 127 LVQTTGVDMSRFPDTSKKIWNVDGKQYGVPNSDMPAMFFINEQMWKDAGLGEYPTTWDEV 186 Query: 181 LELAKAMTKDGVKGIVGSIDPFHITQYVHAFGGGWNFGKTINSAENVKGLQFFVDMYLKS 240 +E AK + K VKGI+ ++D FHIT YV +FGGGW G TINS ENVK L+ +DMY Sbjct: 187 IEAAKVLNKGDVKGIIVNLDAFHITNYVKSFGGGWGNGATINSPENVKALEMIIDMY-DQ 245 Query: 241 KVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVGYLKEANPELELIALPMPKGTVDAQSA 300 +A+ P +G WDGEVFS E+GAMST G WY GYLK+ANP+L+++A+P+PKGT + + Sbjct: 246 GLAVTPKSLGFGWDGEVFSNEQGAMSTGGYWYKGYLKDANPDLKMVAIPVPKGTTNGSTM 305 Query: 301 YSHGLSILQGSKNKEAAMKVISYALRDEAQTDAIETVGYSPAVSALLPKYLEKYPELKPV 360 S +L+ +KNKEAA+K Y D+ QT +E +G++PAVS+L +Y EK PE K + Sbjct: 306 SSDAYMVLKDAKNKEAALKAAYYMTNDDTQTAFME-LGFNPAVSSLSEQYFEKNPEFKAL 364 Query: 361 FDNMEKAGMPFAYPEQTKAFHADLLKGVEEIIFKNGKLPVKELLDELQEKY 411 +E + + YP TK F +L+K +E +I +++LD++Q ++ Sbjct: 365 QPALEYS-TDYGYPTDTKRFTDELVKELEGLILGGSGKTAQQILDDIQSQF 414 >A7VUS5.1 A7VUS5_9CLOT Putative uncharacterized protein Length = 428 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 133/427 (31%), Positives = 212/427 (49%), Gaps = 29/427 (6%) Query: 2 LTGLLAACA---SKTTNNSAEQKTNQSPAATEASEKPADPVEVTMAYWANSAEQKNFEFM 58 + G A C+ S +N AE + +QS + E+ E + V + W + E Sbjct: 14 MVGTAAGCSQNGSSGASNGAESEASQS--SGESQEPSGEVVTLHCGGWGRVDTEH--EAG 69 Query: 59 VKGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXXXXXXMSDEGNYEYIAKGVLEPL 118 V G+ E + V+ Q+YPT +FW +S+E YI G++ PL Sbjct: 70 VVGMAEAIG-INVEFQKYPTDADFWNNLPAQIAAKTAPDFVAISNELYLPYIRDGLIVPL 128 Query: 119 DELIKTVGFDKT-----RITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITK- 172 + I+ D T R+ + WT G +Y IP+ + ++ AIN ++ ++G+T+ Sbjct: 129 TQYIE----DGTITCWDRVNQNAKDVWTVDGDIYAIPFYQTPAVFAINTDLWSEAGLTEA 184 Query: 173 -YPETMDEMLELAKAMTKD--GVKGIVGSIDPFHITQYVHAFGGGWNFGKTINSAENVKG 229 YPET D++L+ K KD G+ G+ + +H T Y +FGGGW+ GKTI++ EN Sbjct: 185 DYPETWDDVLDACKVF-KDTLGMTGLCVNTQEYHFTNYCLSFGGGWDLGKTIDTPENAAA 243 Query: 230 LQFFVDMYLKSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVGYLKEANPELEL--IA 287 LQF +D Y + V + P E+G +DG V E+ AMST G WYV P+L + + Sbjct: 244 LQFIIDAYRQGYV-VTPKELGVSYDGNVIMSEEAAMSTGGSWYVSDFAINAPDLNVKYMK 302 Query: 288 LPMPKGTVDAQSAY-SHGLSILQGSKNKEAAMKVISYALRDEAQTDAIETVGYSPAVSAL 346 +P KG DA + S ++L+G +++ I+Y + D A +A+ +GY P Sbjct: 303 VPHAKGHEDASGTFHSPAFALLKGGAHEKETAMAINYMMND-AHDEALIDLGYIPVNEKF 361 Query: 347 LPKYLEKYPELKPVFDNMEKAGMPFAYPEQTKAFHADLLKGVEEIIFK-NGKLPVKELLD 405 +Y EK P + + D + K+ F YP K F L+ +EE +F + L E++ Sbjct: 362 HNEYKEKNPLVADLVDAIPKSN-GFDYPPAGKEFADTLISKMEEALFNSDSTLTGAEIVK 420 Query: 406 ELQEKYG 412 ELQE+YG Sbjct: 421 ELQEEYG 427 >B0KAN3.1 B0KAN3_THEP3 Extracellular solute-binding protein, family 1 Length = 420 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/420 (29%), Positives = 205/420 (48%), Gaps = 21/420 (5%) Query: 1 MLTGLLAACASKTTNNSAEQKTNQSPAATEASEKPADPVEVTMAYWANS-AEQKNFEFMV 59 +L +LA C+S N S+ +TN T A PV + + W++S AE+K + + Sbjct: 15 VLATVLAGCSSSKNNTSSANETNTQKQET------AKPVTIKLGMWSSSPAEKKIVDDQI 68 Query: 60 KGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXXXXXXMSDEGNYEYIAKGVLEPLD 119 +EKYP + V+++ ++ + + + ++ GVLEPLD Sbjct: 69 AKFKEKYPNIDVQIET--IVGDYMQKLQTELASNTAPDIFYLDSMPAPQLMSSGVLEPLD 126 Query: 120 ELIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITKYPETMDE 179 + IK D +L + GK YG+P D +T L NK MF +GI + P+T +E Sbjct: 127 DYIKKYNVDVNDFEPALLSAFQWDGKTYGLPKDFNTLALFYNKDMFKAAGINEPPKTWEE 186 Query: 180 MLELAKAMTKDGVKGIVGSIDPFHITQYVHAFGGG-WNFGK-TINSAENVKGLQFFVDMY 237 + ++AK +TKDGVKG+V S D +++ GG + GK T+N EN + L F+V + Sbjct: 187 LRDVAKKLTKDGVKGLVLSADLARFDAFINQNGGSVYQDGKVTLNLPENAQALDFYVSLI 246 Query: 238 LKSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVGYLKEANPELELIALPMPKGTVDA 297 K KVA P +G W+G+ F+ +K AM+ G W + +LKE P+L +P G + Sbjct: 247 TKDKVADTPQNMGEGWNGDAFAAKKAAMAIEGGWMIPFLKEKAPDLNYGIAELPAGKQKS 306 Query: 298 QSAYSHGLSILQGSKNKEAAMKVISYALRDEAQTDAIETVGYSPAVSALLPKYLEKYPEL 357 A++ + + SK+K+ A K+I + E Q +++ P+ ++ + EKYPE Sbjct: 307 TMAFTVAYVMNKNSKHKDEAFKLIEFLTGKEGQQFVVDSGLALPSRKSMQEGFKEKYPER 366 Query: 358 KPVFDNMEKAGMPFAYPEQTKAFHADLL----KGVEEIIFKNGKLPVKELLDELQEKYGQ 413 D G +A P Q + ++ K E +I K ++ LD Q++ GQ Sbjct: 367 AAFVD-----GASYAVPWQFGLYGTKVVDAANKACEALIMKQIS-SAQQALDNAQKEVGQ 420 >B0K4K0.1 B0K4K0_THEPX Extracellular solute-binding protein, family 1 Length = 420 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/420 (29%), Positives = 205/420 (48%), Gaps = 21/420 (5%) Query: 1 MLTGLLAACASKTTNNSAEQKTNQSPAATEASEKPADPVEVTMAYWANS-AEQKNFEFMV 59 +L +LA C+S N S+ +TN T A PV + + W++S AE+K + + Sbjct: 15 VLATVLAGCSSSKNNTSSANETNTQKQET------AKPVTIKLGMWSSSPAEKKIVDDQI 68 Query: 60 KGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXXXXXXMSDEGNYEYIAKGVLEPLD 119 +EKYP + V+++ ++ + + + ++ GVLEPLD Sbjct: 69 AKFKEKYPNIDVQIET--IVGDYMQKLQTELASNTAPDIFYLDSMPAPQLMSSGVLEPLD 126 Query: 120 ELIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITKYPETMDE 179 + IK D +L + GK YG+P D +T L NK MF +GI + P+T +E Sbjct: 127 DYIKKYNVDVNDFEPALLSAFQWDGKTYGLPKDFNTLALFYNKDMFKAAGINEPPKTWEE 186 Query: 180 MLELAKAMTKDGVKGIVGSIDPFHITQYVHAFGGG-WNFGK-TINSAENVKGLQFFVDMY 237 + ++AK +TKDGVKG+V S D +++ GG + GK T+N EN + L F+V + Sbjct: 187 LRDVAKKLTKDGVKGLVLSADLARFDAFINQNGGSVYQDGKVTLNLPENAQALDFYVSLI 246 Query: 238 LKSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVGYLKEANPELELIALPMPKGTVDA 297 K KVA P +G W+G+ F+ +K AM+ G W + +LKE P+L +P G + Sbjct: 247 TKDKVADTPQNMGEGWNGDAFAAKKAAMAIEGGWMIPFLKEKAPDLNYGIAELPAGKQKS 306 Query: 298 QSAYSHGLSILQGSKNKEAAMKVISYALRDEAQTDAIETVGYSPAVSALLPKYLEKYPEL 357 A++ + + SK+K+ A K+I + E Q +++ P+ ++ + EKYPE Sbjct: 307 TMAFTVAYVMNKNSKHKDEAFKLIEFLTGKEGQQFVVDSGLALPSRKSMQEGFKEKYPER 366 Query: 358 KPVFDNMEKAGMPFAYPEQTKAFHADLL----KGVEEIIFKNGKLPVKELLDELQEKYGQ 413 D G +A P Q + ++ K E +I K ++ LD Q++ GQ Sbjct: 367 AAFVD-----GASYAVPWQFGLYGTKVVDAANKACEALIMKQIS-SAQQALDNAQKEVGQ 420 >Q8RBL7.1 Q8RBL7_THETN Sugar-binding periplasmic proteins/domains Length = 417 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 121/420 (28%), Positives = 205/420 (48%), Gaps = 26/420 (6%) Query: 1 MLTGLLAACASKTTNNSAEQKTNQSPAATEASEKPADPVEVTMAYWANS-AEQKNFEFMV 59 +L +LA C+S T P + +++ + PV + + W++S AE+K + + Sbjct: 15 VLATILAGCSSSKT-----------PESQTPTQETSKPVTIKLGMWSSSPAEKKIVDDQI 63 Query: 60 KGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXXXXXXMSDEGNYEYIAKGVLEPLD 119 +EKYP + V+++ ++ + + + ++ GVLEPLD Sbjct: 64 AKFKEKYPNIDVQIET--IVGDYMQKLQTELASNTAPDIFYLDSMPAPQLMSSGVLEPLD 121 Query: 120 ELIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITKYPETMDE 179 E IK D +L + GK YG+P D +T +L NK MF ++GI + P+T +E Sbjct: 122 EYIKKYNVDVNDFEPALLSAFQWEGKTYGLPKDYNTLVLFYNKDMFKEAGINEPPKTWEE 181 Query: 180 MLELAKAMTKDGVKGIVGSIDPFHITQYVHAFGGG-WNFGK-TINSAENVKGLQFFVDMY 237 + E AK +TK+GVKGIV S D +++ G + GK T+N +N + L F+V + Sbjct: 182 LRETAKKLTKNGVKGIVLSADLARFDAFINQNDGSVYKDGKVTLNLPQNAEALDFYVGLI 241 Query: 238 LKSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVGYLKEANPELELIALPMPKGTVDA 297 ++ KVA P +G W+G+ F+ +K AM+ G W + +LKE P+L +P G + Sbjct: 242 IRDKVADTPQNMGEGWNGDAFAAKKAAMAIEGGWMIPFLKEKAPDLNYGIAELPAGKKKS 301 Query: 298 QSAYSHGLSILQGSKNKEAAMKVISYALRDEAQTDAIETVGYSPAVSALLPKYLEKYPEL 357 A++ + + SK+K+ A K+I + E Q +++ P+ ++ + EKYPE Sbjct: 302 TMAFTVAYVMNKNSKHKDEAFKLIEFLTGKEGQQFVVDSGLALPSRKSMEANFKEKYPER 361 Query: 358 KPVFDNMEKAGMPFAYPEQTKAFHADLL----KGVEEIIFKNGKLPVKELLDELQEKYGQ 413 P D G +A P Q + L+ K E +I K +E LD Q++ Q Sbjct: 362 APFID-----GASYAVPWQFGLYGTKLVDAANKACEALIMKQIG-SAQEALDNAQKEVMQ 415 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,361,807,151 Number of extensions: 97519574 Number of successful extensions: 247365 Number of sequences better than 1.0e-05: 736 Number of HSP's gapped: 247367 Number of HSP's successfully gapped: 736 Length of query: 414 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 276 Effective length of database: 1,760,596,133 Effective search space: 485924532708 Effective search space used: 485924532708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)