BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0019.p (551 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K433.1 B3K433_9BACI Response regulator receiver 229 6e-58 A7VUS3.1 A7VUS3_9CLOT Putative uncharacterized protein 211 1e-52 B9MPG5.1 B9MPG5_ANATD Two component transcriptional regulator, A... 181 1e-43 B8I997.1 B8I997_CLOCE Two component transcriptional regulator, A... 172 7e-41 A6LT80.1 A6LT80_CLOB8 Response regulator receiver protein 169 6e-40 >B3K433.1 B3K433_9BACI Response regulator receiver Length = 518 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 158/546 (28%), Positives = 266/546 (48%), Gaps = 35/546 (6%) Query: 1 MKILIADDESYMRMSLKTSLNWEAYGFQVIGDAAHGEDALVKIAELKPDIVLMDIKMPIM 60 M+ILI DDE +R+ +K++++WEA G ++G+A GE+AL I E PD+VL+DIKMP M Sbjct: 1 MRILIVDDEPLVRIGIKSAIDWEAQGVDIVGEAGDGEEALRLITETVPDVVLLDIKMPKM 60 Query: 61 DGLQALEKLQGWNDPPKVIMLSSYKEFEYVREGMRLGAVDYIHKPSLNEAGIFDALRRAR 120 DGL+ L ++ P + ++LSS+ + YV+E ++LGA DY HKP +NE + L+ R Sbjct: 61 DGLEVLRTIKDRQIPVQTVVLSSFDDIAYVKEALKLGAFDYFHKPDMNERELTAMLKSVR 120 Query: 121 ETIMRERKQTDEIENLRQNAERVKP----NMKAVFFKEWSEGAIRHTWEIEDKMKEYDVR 176 E R +V P N K + G + E E Sbjct: 121 EQF-----------GSRGIPVQVGPATAGNRKEQILFDALRGHVHDLHETE--------- 160 Query: 177 LQAPNLVCFAFHIDQFSKVRKRYKQDMEYLLYFSIQNILSEVLRKFDEVEFFQHRQNGFA 236 L+ N+ F I + V KRY ++ E +L ++QN++SE+L EVE+ Q + A Sbjct: 161 LKEGNMYVVLFRIKDYHTVIKRYAKETESILPNTVQNVVSEILSTEKEVEYLQLDEQCSA 220 Query: 237 ILKSYSSLRSAQSIYNEQWNLIKTVQNALHKFMNINVSFGISALHLSLLDVPLALKEAEK 296 + S S L+S + +++ + +AL +F+NI++ GIS + ++A K Sbjct: 221 VFISNSELKSLLASLTRVNKMVQMISSALKRFVNIDIVLGISDWFADFDGIRTGYEQAGK 280 Query: 297 VLESNFYDKESGVIFYQLEGTGSVPGKKEDLNKHAFEKKVQQIKLEIENEQWERILGSMG 356 L FY ++ + +YQ + K E + + A + + Q+K + E +R L + Sbjct: 281 ALSHQFYHPDTSIFYYQ-----HLKQKGEHVYRQA-DAYLSQMKSALREEANDRFLELLS 334 Query: 357 QLFEELRQNRQLSKQEMLRIATYLHYAFSRACETETGLPIDXXXXXXXXXXXXTQ-QQIY 415 Q L Q + ++++ ++ L + G + Q Y Sbjct: 335 QWERFLAQEECMEEKDVRKVYEGLLFMIGEGTGVPGGGDVQEETSAFEEIHEFGQLSAAY 394 Query: 416 ELLVQEAEYVQYKKNTNAASQKMNHKIRLVIDYIHEYYDRDLNLEELSHYVGLNHSYLSR 475 L +E +Y+ SQ R +++Y E+Y L+L+ ++ +Y+SR Sbjct: 395 RALFEERLKHRYQLEHKGYSQLT----RNIMEYTEEHYPESLSLKLFGDLFHVSPNYVSR 450 Query: 476 LFKEQTGMVLIQYINQYRVNKSLDLLINSTMKTYEIAERVGFKSTDNFYIAFKRLIGFPP 535 LFK++ G L YIN+ R+ K+ LL + K Y++AE VGF + +F I F++ GF P Sbjct: 451 LFKQEVGQGLFDYINELRIEKAKVLLKDYRYKIYDVAEMVGFNNQAHFAIVFQKYTGFSP 510 Query: 536 NEVRKN 541 + RK+ Sbjct: 511 KQYRKD 516 >A7VUS3.1 A7VUS3_9CLOT Putative uncharacterized protein Length = 528 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 152/563 (26%), Positives = 273/563 (48%), Gaps = 67/563 (11%) Query: 1 MKILIADDESYMRMSLKTSLNWEAYGFQVIGDAAHGEDALVKIAELKPDIVLMDIKMPIM 60 + I I DDES +R+ +K+S+ WE YG+++IG+A +G++ L I + +PDIVL+DI MP+M Sbjct: 4 ISIAIIDDESLVRLGIKSSVEWENYGYEIIGEADNGQNGLEMIQQKQPDIVLLDICMPVM 63 Query: 61 DGLQALEKLQGWNDPPKVIMLSSYKEFEYVREGMRLGAVDYIHKPSLNEAGIFDALRRAR 120 DG++ L++LQ KVI+LS + +F +V+E M+ GA DY+ K +N A I + L R Sbjct: 64 DGIEVLKRLQQMEIDCKVIILSCHDDFHFVKEAMKNGAYDYLRKNEINSANILNILEEVR 123 Query: 121 ETIMRERKQTDEIENLRQNAERVKPNMKAVFFKEWSEGAIRHTW--EIEDKMKEYD---- 174 +++ ERK + E +EW G RH+W + + E D Sbjct: 124 QSVREERKNKEASEEK----------------EEWG-GCSRHSWLQRLVTEGTEADGHSV 166 Query: 175 ----VRLQAPNLVCFAFHIDQFSKVRKRYKQDMEYLLYFSIQNILSEVLR-KFDEVEFFQ 229 + +Q L C F + + +V RY+ + L SI N+ EV+R + E+E F Sbjct: 167 PVSRLHIQEGGLCCVVFGVSHYRQVLTRYEDGYPFTLEHSITNLAKEVIRQRTREMEIFL 226 Query: 230 HRQNGFAILKSYSSLRSAQSIYNEQW-----NLIKTVQNALHKFMNINVSFGISALHLSL 284 ++N + +L L S S+ QW +LI + ++N +G S + Sbjct: 227 FQENQYVLL-----LSSRDSVSGAQWEEEVFSLINELYTVFQNYLNAETYYGASGIVSKF 281 Query: 285 LDVPLALKEAEKVLESNFYDKESGVIFYQLEGTGSVPGKKEDLNKHAFEKKVQQIKLEIE 344 +P A + A+ + +++ + ++ V L++ + + +I I Sbjct: 282 SSLPEAFERAQYSYKLHYFQPDKIIL-------KEVRKPARTLSEEEVKSGLNEINSCIS 334 Query: 345 NEQWERILGSMGQLFEELRQNRQLSKQEMLRIATYLHYAFSRACE----TETGLPIDXXX 400 +Q+ + + LR++ +E L +A L++ FS E +P + Sbjct: 335 QKQYSHAFSHLYTFIQWLRRHH----RENLDVAGILNF-FSNMVRFILLQEGKIPEETID 389 Query: 401 XXXXXXXXXTQQQIYELLVQEAEYVQYKKNTNAASQKMNHK---IRLVIDYIHEYYDR-D 456 +Q ++++ A +++ K IR DYI + R D Sbjct: 390 KLQKCENLDDTEQFLS---------EFQRELKAEEPELDQKHYLIRAATDYIQQNLSRGD 440 Query: 457 LNLEELSHYVGLNHSYLSRLFKEQTGMVLIQYINQYRVNKSLDLLINSTMKTYEIAERVG 516 ++L+E++ ++ ++ SYL RLF+++ G+ + YI+ R+ K+ + L + +K YEIAE G Sbjct: 441 ISLDEIAEHLMISKSYLCRLFQKKLGVSVQHYIHNIRIEKAKEYLNDFRLKIYEIAELTG 500 Query: 517 FKSTDNFYIAFKRLIGFPPNEVR 539 F S+ +F I FK+++ P E R Sbjct: 501 FNSSTHFNIVFKKIMQCTPVEYR 523 >B9MPG5.1 B9MPG5_ANATD Two component transcriptional regulator, AraC family Length = 546 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 156/577 (27%), Positives = 280/577 (48%), Gaps = 74/577 (12%) Query: 2 KILIADDESYMRMSLKTSLNWEAYGFQVIGDAAHGEDALVKIAELKPDIVLMDIKMPIMD 61 KI+I DD+ +R ++ + W+ ++ G+A+ G+DAL I ++KPDIV+ DIKMP MD Sbjct: 3 KIVIVDDDMLIRKGIRNVIRWKDLDCEISGEASSGDDALKVIEKVKPDIVITDIKMPNMD 62 Query: 62 GLQALEKLQGWNDPPKVIMLSSYKEFEYVREGMRLGAVDYIHKPSLNEAGIFDALRRARE 121 G++ +E+++ K+++L++Y+EFEY + ++ GA D++ KP+ E I + +++A + Sbjct: 63 GIELIERIKKIIPHCKIVILTAYREFEYAQRAIKCGAFDFLLKPTKVE-DIINVVQKAID 121 Query: 122 TIMRERKQTDEIENLRQNAERVKPNMKAVFFKEWSEGAIRHTWEIEDKMKEYDVRLQAPN 181 I +E+ +E+E + + P ++ F I + EI Y++ + Sbjct: 122 EIKKEKTILEEVEKINNILKEKLPILRENFLFNVMFEMISNEDEILQMASLYEIEIDI-- 179 Query: 182 LVCFAFHIDQFSKVRKRYKQDMEYLLYFSIQNILSEVLRKFDEVEFFQHRQNGFAILKSY 241 F + + S +R +Q+ +L I N+L++ L N F I Y Sbjct: 180 ---FLMILAECSTKEERGRQNT-HLYLLGISNMLNDFL------------SNNFTIYTIY 223 Query: 242 SSLRSAQSIY-------------NEQWNLIKTVQNALHKFMNINVSFGISALHLSLLDVP 288 L ++Q++Y + + L+ ++ A + NI+++F +S L+ +P Sbjct: 224 --LNNSQAVYIVNSKKELDKEEEKKFFELLSQLKKAAMECFNIDLTFAVSTWGRGLVQLP 281 Query: 289 LALKEAEKVLESNFYDKESGVIFYQLEGTGSVPGKKEDLNKHAF----EKKVQQIK---- 340 KE + FY E +I+Y+ DL+ H F ++K++ +K Sbjct: 282 DKYKECIDAINYRFYFDEEDIIYYK------------DLS-HFFMYVDDRKLKNLKNEIL 328 Query: 341 LEIENEQWERILGSMGQLFEELRQNRQLSKQ-----------EMLRIATYLHYAFSRACE 389 L + + I + +L E L++++ KQ E+ I L A ++ Sbjct: 329 LSVRYGNYSNINNILLELEETLKKSKA-DKQYIFNFYYLLLIEINMIKAQLSSAINKPDN 387 Query: 390 TETGLPIDXXXXXXXXXXXXTQQQIYELLVQEA-EYVQYKKNTNAASQKMNHKIRLVIDY 448 E D I + +Q E VQ K N N KM I+ VIDY Sbjct: 388 PEMFENFDYFNEIIKCKSLSELSNILRISIQRTIEEVQ-KHNLN----KMGSLIKKVIDY 442 Query: 449 IHE-YYDRDLNLEELSHYVGLNHSYLSRLFKEQTGMVLIQYINQYRVNKSLDLLINSTMK 507 I E Y+ +++L ++S ++ SYLSRLFK++TG L +IN+YR+ K+ LL+ + +K Sbjct: 443 IKENYHSSEISLSDISEKFFVSPSYLSRLFKKETGKNLSDFINEYRIEKAKQLLLTTDIK 502 Query: 508 TYEIAERVGFKSTDNFYIAFKRLIGFPPNEVRKNPEL 544 TYE+A++VG F FKR G+ P+E ++ +L Sbjct: 503 TYEVADKVGIPDPHYFSRLFKRYTGYSPSEYKEGAKL 539 >B8I997.1 B8I997_CLOCE Two component transcriptional regulator, AraC family Length = 542 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 137/557 (24%), Positives = 264/557 (47%), Gaps = 36/557 (6%) Query: 1 MKILIADDESYMRMSLKTSLNWEAYGFQVIGDAAHGEDALVKIAELKPDIVLMDIKMPIM 60 +KI+I DDE Y R +LK S+ W+ YGF++ G+A +G+DAL ++A+L PDI+++DI MPI+ Sbjct: 2 LKIMIIDDEFYFREALKVSIPWKEYGFEICGEAKNGKDALERVADLNPDIMIVDINMPII 61 Query: 61 DGLQALEKLQGWNDPPKVIMLSSYKEFEYVREGMRLGAVDYIHKPSLNEAGIFDALRRAR 120 DGL+ ++ ++ K I+L+ + EF Y ++ ++LG +YI KP +NE + +L + Sbjct: 62 DGLEFIQSVKEKGIESKFIILTGHSEFNYAKQAVQLGVNNYILKP-VNEEELKSSLFEIK 120 Query: 121 ETIMRERKQTDEIENLRQNAERVKPNMKAVFFKEWSEGA-IRHTWEIEDKMKEYDVRLQA 179 E I +ER E E L+Q P +K F E +G+ I E KM+ + + + Sbjct: 121 EVISKERNVKFEFEGLKQQVRDSLPLLKDKFLNELIQGSLIPKENETLKKMEYLKININS 180 Query: 180 PNLVCFAFHIDQFSKVRKRYKQDMEYLLYFSIQNILSEVLRK---FDEVEFFQHRQNGFA 236 + +D + + + L F++ NI SE++ + FD R Sbjct: 181 DYYLVITIELD--CDESTGWDNEEKQLWKFAVSNISSEIMGEKFIFDICYDIDDRICIIV 238 Query: 237 ILKSYSSLRSAQSIYNEQWNLIKTVQNALHKFMNINVSFGISALHLSLLDVPLALKEAEK 296 + ++ ++ + LI++ A+ K ++ V+ G+ + L D+P++ KE+ Sbjct: 239 GIDGAQNIGDFLTLLESRLELIRS---AICKHLDFTVTMGVGSEKTELFDIPISYKESII 295 Query: 297 VLESNFYDKESGVIFYQLEGTGSVPGKKEDLNKHAFEKKVQ-QIKLEIENEQWERILGSM 355 L++ ++ +I Y L + G AF + + ++ + I E + + Sbjct: 296 ALKNKLTLGKNRIILYSLVAESGIKGT-------AFSGEYRNKLLMNIRTADEEEVNKLI 348 Query: 356 GQLFEELRQNRQLSKQEMLRIATYLHYAFSRACETETGLPIDXXXXXXXXXXXXTQQQ-- 413 Q+F +R + Q + + + A A E GL I+ Q Sbjct: 349 SQIFMRVR-GENIHHQILFVVCIEMVAACMEAI-VEMGLHIEDIITGNSFNIIEEIQSKK 406 Query: 414 --------IYELLVQEAEYVQYKKNTNAASQKMNHKIRLVIDYIHE-YYDRDLNLEELSH 464 I ++ E ++ K + A+ I V +YI Y +L+++E++ Sbjct: 407 SIDEMENWIKDIFKHTLETIKRNKISKAS-----RLIEEVKNYISSNYQSSELSIDEIAR 461 Query: 465 YVGLNHSYLSRLFKEQTGMVLIQYINQYRVNKSLDLLINSTMKTYEIAERVGFKSTDNFY 524 + +N+++L +FK TG + +Y+ ++R+ K+ +L + ++A +VG+ F Sbjct: 462 NLFVNYAHLCFIFKRDTGFTINEYLTEFRIKKAKELFDSGNTLILDVASKVGYADASYFG 521 Query: 525 IAFKRLIGFPPNEVRKN 541 FK+ G P++ +N Sbjct: 522 KCFKKYYGLAPSKFIEN 538 >A6LT80.1 A6LT80_CLOB8 Response regulator receiver protein Length = 541 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 142/565 (25%), Positives = 263/565 (46%), Gaps = 60/565 (10%) Query: 2 KILIADDESYMRMSLKTSLNWEAYGFQVIGDAAHGEDALVKIAELKPDIVLMDIKMPIMD 61 K++I DDE R L +NWE F+++ A++G+DAL K ++KPD+++ DI+MPI+D Sbjct: 3 KVMIVDDEIPAREILLCIINWEDTDFRIVYSASNGKDALDKYTDIKPDLIITDIQMPIID 62 Query: 62 GLQALEKLQGWNDPPKVIMLSSYKEFEYVREGMRLGAVDYIHKPSLNEAGIFDALRRARE 121 GL +E++Q N K ++LS Y++F Y + M++G DY+ K + ++ L + Sbjct: 63 GLDLIEEVQKINKSQKFLILSCYEDFTYAQRAMKMGVTDYLIKDLITPNDLYGILAKT-- 120 Query: 122 TIMRERKQTDEIENLRQNAERVKPNMKAV-FFKEWSEGAIRHTWEIEDKMKEYDV----- 175 QTD ++N+ +K K + F KE + A+R I + + + D Sbjct: 121 -------QTD-LDNITIKKSEIKKEHKLLNFLKENKDIALRKL--IFNDISQDDCYNLIE 170 Query: 176 ----RLQAPNLVCFAFHIDQFSKVRKRYKQDMEYLLYFSIQNILSEVLRKFDEV------ 225 L V F ID F K Y +D + N L+E+++ E Sbjct: 171 NLNLNLNGKLFVLFLIQIDNFFK----YIEDENFY-----TNTLNEIIKNVSETIEELNI 221 Query: 226 -EFFQHRQNGFAILKSYSSLRSAQSIYNEQWNLIKTVQNALHKFMNINVSFGISALHLSL 284 E F F + S S I NE + L + ++ + NI+++ +S+ Sbjct: 222 GECFYSENGEFTAIVRLSPTISEADIINECYYLAQEIRKRISLMHNISLTISVSSTFKKP 281 Query: 285 LDVPLALKEAEKVLESNFYDKESGVIFYQLEGTGSVPGKKEDLNKHAFEKKVQQIKLEIE 344 + EA K+ + + +I + K DL+ K++ I + IE Sbjct: 282 FKIKKYFDEAFKLSKMKVFLGNDTIIL------NNTFVKNLDLDTDTLAKRINAINIAIE 335 Query: 345 NEQWERILGSMGQLFE-ELRQNRQLS-----KQEMLRIATYLHYAFSRACE---TETGLP 395 E + + L++ ++R Q + +L + +S A E + + LP Sbjct: 336 QNNIENLKSELTHLYDKDIRGFMQFNYLNYINSSLLDLVVRTCNRYSIAYEDIFSTSYLP 395 Query: 396 IDXXXXXXXXXXXXTQQQIYELLVQEAEYVQYKKNTNAASQKMNHKIRLVIDYIHE-YYD 454 I+ T +++ ++ + N+ K + K+ IDYI++ ++ Sbjct: 396 IE------ILSTKETVEEMSGWFIEIFTKIININFNNSFKNKYSKKVADSIDYINKNLFN 449 Query: 455 RDLNLEELSHYVGLNHSYLSRLFKEQTGMVLIQYINQYRVNKSLDLLINSTMKTYEIAER 514 + L+L +++ + ++ YL R+FKE+TG + QYI + R++KS ++++++ K YEI+++ Sbjct: 450 QSLSLTDIAENINVHKVYLCRIFKEETGENVTQYILKARIDKSKEIILSTNYKLYEISDK 509 Query: 515 VGFKSTDNFYIAFKRLIGFPPNEVR 539 +GF S F I FK++ G PN+ R Sbjct: 510 LGFNSPQQFSILFKKVTGITPNQFR 534 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,051,090,736 Number of extensions: 123349883 Number of successful extensions: 441534 Number of sequences better than 1.0e-05: 13758 Number of HSP's gapped: 452944 Number of HSP's successfully gapped: 14352 Length of query: 551 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 410 Effective length of database: 1,732,333,088 Effective search space: 710256566080 Effective search space used: 710256566080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)