BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0016.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0KAN1.1 B0KAN1_THEP3 Monosaccharide-transporting ATPase EC=3.6.... 251 6e-65 B0K4J8.1 B0K4J8_THEPX Monosaccharide-transporting ATPase EC=3.6.... 249 2e-64 Q8RBL5.1 Q8RBL5_THETN Sugar permeases 246 1e-63 B7R7E7.1 B7R7E7_9THEO ABC transporter, permease protein, putative 238 3e-61 B3K436.1 B3K436_9BACI Binding-protein-dependent transport system... 230 9e-59 >B0KAN1.1 B0KAN1_THEP3 Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 269 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 122/247 (49%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 24 PFGYAIYTSLLGKSDIGHW-VGVARLTLENYKDVFVNSDMTVWYVNSIVVTLGILLGNLA 82 PF ++I TSL S++ + V + LTL+NYK + W++NS +V + + LGN+ Sbjct: 23 PFIWSIITSLKPTSELNTFAVNIKHLTLDNYKMIITKFPFLRWFINSAIVAVIVTLGNIL 82 Query: 83 INTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLGWLNSYQGLIIPFM 142 N+MA Y+L+R+N+PGR L P QV ++P Y ++ KLGW+N+Y GL IPF+ Sbjct: 83 FNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVPTYILLSKLGWVNTYMGLTIPFL 142 Query: 143 FQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAIGTQIIFSFTGTWN 202 F +FLMRQF +S+PKELEEAA +DGL++ GIFF+I+LPLSK A+ TQ IF FTG WN Sbjct: 143 TSNFGIFLMRQFFLSLPKELEEAATIDGLSRFGIFFKIVLPLSKPALATQFIFMFTGNWN 202 Query: 203 SFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPIIVVFLIFQRHLVQG 262 SF+WP L + Y L VGLN+ +Y+++ N M G +LLTLP I++FLIFQR+ V+G Sbjct: 203 SFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAGAILLTLPTILIFLIFQRYFVKG 262 Query: 263 IATTGLK 269 I+TTGLK Sbjct: 263 ISTTGLK 269 >B0K4J8.1 B0K4J8_THEPX Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 269 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 121/247 (48%), Positives = 168/247 (68%), Gaps = 1/247 (0%) Query: 24 PFGYAIYTSLLGKSDIGHWV-GVARLTLENYKDVFVNSDMTVWYVNSIVVTLGILLGNLA 82 PF ++I TSL S++ +V + LTL+NYK + W++NS +V + GN+ Sbjct: 23 PFIWSIITSLKPTSELNTFVVNIKHLTLDNYKMIITKFPFLRWFINSAIVAAIVTFGNML 82 Query: 83 INTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLGWLNSYQGLIIPFM 142 N+MA Y+L+R+N+PGR L P QV ++P Y ++ KLGW+N+Y GL IPF+ Sbjct: 83 FNSMAGYALARINFPGRNLLFMVVLALMMVPGQVVMVPTYILLSKLGWVNTYMGLTIPFL 142 Query: 143 FQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAIGTQIIFSFTGTWN 202 F +FLMRQF +S+PKELEEAA +DGL++ GIFF+I+LPLSK A+ TQ IF FTG WN Sbjct: 143 TSNFGIFLMRQFFLSLPKELEEAATIDGLSRFGIFFKIVLPLSKPALATQFIFMFTGNWN 202 Query: 203 SFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPIIVVFLIFQRHLVQG 262 SF+WP L + Y L VGLN+ +Y+++ N M G +LLTLP I++FLIFQR+ V+G Sbjct: 203 SFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAGAILLTLPTILIFLIFQRYFVKG 262 Query: 263 IATTGLK 269 I+TTGLK Sbjct: 263 ISTTGLK 269 >Q8RBL5.1 Q8RBL5_THETN Sugar permeases Length = 269 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/247 (48%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 24 PFGYAIYTSLLGKSDIGHW-VGVARLTLENYKDVFVNSDMTVWYVNSIVVTLGILLGNLA 82 PF ++I TSL S++ + V + LTL+NYK + W++NS +V + GN+ Sbjct: 23 PFIWSIITSLKPTSELNTFAVNIKHLTLDNYKMIITKFPFLRWFINSAIVAAIVTFGNML 82 Query: 83 INTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLGWLNSYQGLIIPFM 142 N+MA Y+L+R+N+PGR P QV ++P Y ++ KLGW+N+Y GL IPF+ Sbjct: 83 FNSMAGYALARINFPGRNFLFLLVLALMMIPGQVVMVPTYILLSKLGWVNTYMGLTIPFL 142 Query: 143 FQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAIGTQIIFSFTGTWN 202 F +FLMRQF ++IP+ELEEAA +DG+++ GIFF+I+LPL+K A+ TQ IF FTG WN Sbjct: 143 TSNFGIFLMRQFFLTIPRELEEAATIDGMSRFGIFFKIVLPLAKPALATQFIFMFTGNWN 202 Query: 203 SFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPIIVVFLIFQRHLVQG 262 SF+WP L + Y L VGLN+ +Y+++ N M G +LLTLP IV+FLIFQR+ V+G Sbjct: 203 SFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAGAILLTLPTIVIFLIFQRYFVRG 262 Query: 263 IATTGLK 269 IATTGLK Sbjct: 263 IATTGLK 269 >B7R7E7.1 B7R7E7_9THEO ABC transporter, permease protein, putative Length = 279 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/257 (46%), Positives = 167/257 (64%), Gaps = 11/257 (4%) Query: 24 PFGYAIYTSLLGKSDIGHW-VGVARLTLENYKDVFVNSDMTVWYVNSIVVTLGILLGNLA 82 PF ++I TSL S++ + V + LTL+NYK + W++NS +V + GN+ Sbjct: 23 PFIWSIITSLKPTSELNTFAVNIKHLTLDNYKMIITKFPFLRWFINSAIVAAIVTFGNML 82 Query: 83 INTMAAY----------SLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLGWLN 132 N+MA Y +L+R+N+PGR P QV ++P Y ++ KLGW+N Sbjct: 83 FNSMAGYXXXXXXXAGYALARINFPGRNFLFLLVLALMMIPGQVVMVPTYILLSKLGWVN 142 Query: 133 SYQGLIIPFMFQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAIGTQ 192 +Y GL IPF+ F +FLMRQF ++IP+ELEEAA +DG+++ GIFF+I+LPL+K A+ TQ Sbjct: 143 TYMGLTIPFLTSNFGIFLMRQFFLTIPRELEEAATIDGMSRFGIFFKIVLPLAKPALATQ 202 Query: 193 IIFSFTGTWNSFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPIIVVF 252 IF FTG WNSF+WP L + Y L VGLN+ +Y+++ N M G +LLTLP IV+F Sbjct: 203 FIFMFTGNWNSFLWPSLLTSSDDMYTLPVGLNSFYGQYYQFWNQVMAGAILLTLPTIVIF 262 Query: 253 LIFQRHLVQGIATTGLK 269 LIFQR+ V+GIATTGLK Sbjct: 263 LIFQRYFVRGIATTGLK 279 >B3K436.1 B3K436_9BACI Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 230 bits (587), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 111/257 (43%), Positives = 169/257 (65%), Gaps = 2/257 (0%) Query: 16 LCSIFFILPFGYAIYTSLLGKSDIGHWVGVARLTLENYKDVFVNSDMTV--WYVNSIVVT 73 + + F LPF Y IYTS++ + A T EN+K F N V W++N++++T Sbjct: 18 ILGLLFALPFLYTIYTSVIPMRHVNTLTSPANWTFENFKIFFTNDAYNVPRWFMNTVIMT 77 Query: 74 LGILLGNLAINTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLGWLNS 133 +++GNL IN MA ++L++LN+ G+GL PY + +IP+Y + +LGWLN+ Sbjct: 78 GVVVIGNLIINPMAGFALAKLNFKGKGLIYWIVVATMMVPYHMILIPVYVNVAQLGWLNT 137 Query: 134 YQGLIIPFMFQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAIGTQI 193 + GL +PF++QG +F++RQF +S+P E EAA +DGLTK+G F+RI+ PL++ ++ T Sbjct: 138 FWGLTVPFLYQGLYIFMLRQFFISVPNEFLEAARMDGLTKMGAFWRIVYPLARSSLITMS 197 Query: 194 IFSFTGTWNSFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPIIVVFL 253 I +F GTWNS++ P TL N YVL VGLN++K+ +FE + M GVVL TLPII+ F Sbjct: 198 ILAFAGTWNSYLVPSTLANTPEMYVLVVGLNSVKDMFFENTPMIMAGVVLSTLPIILFFF 257 Query: 254 IFQRHLVQGIATTGLKG 270 +FQR ++GI+ G+KG Sbjct: 258 LFQRQYIEGISNAGVKG 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,480,671,736 Number of extensions: 58841084 Number of successful extensions: 223330 Number of sequences better than 1.0e-05: 5865 Number of HSP's gapped: 215050 Number of HSP's successfully gapped: 5865 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)