BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0015.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7VUS6.1 A7VUS6_9CLOT Putative uncharacterized protein 268 7e-70 B3K435.1 B3K435_9BACI Binding-protein-dependent transport system... 259 3e-67 B0KAN2.1 B0KAN2_THEP3 Binding-protein-dependent transport system... 206 2e-51 Q8RBL6.1 Q8RBL6_THETN ABC-type sugar transport systems, permease... 199 2e-49 B7R7E8.1 B7R7E8_9THEO ABC transporter, permease protein, putative 199 2e-49 >A7VUS6.1 A7VUS6_9CLOT Putative uncharacterized protein Length = 308 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 132/268 (49%), Positives = 187/268 (69%), Gaps = 1/268 (0%) Query: 27 RLASSSKFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEML 86 +L G++FV P + F IWF YP +++ SF ++ P+ FIGL NY + Sbjct: 17 KLRKQEAIAGWIFVLPAVAFWLIWFLYPAVKAISISFYHYNYATPETNAFIGLDNYIRLF 76 Query: 87 KDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVT 146 +D F+ A+ +S ++ +I VPLQ++I+ IAV LN R K FR+ Y+PY+ S VAVT Sbjct: 77 QDPKFFTAMGHSFLMVLIIVPLQTLISFAIAVLLNGKIRCKGFFRSSCYIPYVISAVAVT 136 Query: 147 TVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQ 206 FMY F++ +G ATKFF+L G+E+VSW+ASTKYAL FLI++ VW IGFY+V+++GGLQ Sbjct: 137 IFFMYFFVK-NGPATKFFSLLGLENVSWFASTKYALAFLIIVYVWQQIGFYMVIFIGGLQ 195 Query: 207 NIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSL 266 +P ++YE+ VDGA AWQRL IT+P+++ TT+LVLT G+I A Q+FDQ AL++ L Sbjct: 196 EVPVELYEAAKVDGAGAWQRLIKITVPLIRNTTYLVLTFGMISAFQIFDQIAALSKQAPL 255 Query: 267 GSPAGATSTIVIYFYSQAFSFNRAGYGS 294 GSP+GATST+V + Y Q+FS+ GYGS Sbjct: 256 GSPSGATSTMVTFLYQQSFSYMDMGYGS 283 >B3K435.1 B3K435_9BACI Binding-protein-dependent transport systems inner membrane component Length = 314 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 136/307 (44%), Positives = 195/307 (63%), Gaps = 1/307 (0%) Query: 11 REANWKAGRSPSQIGLRLASSSKFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLN 70 + A+ K + LA S K +G+LF P LI WF YP ++SFV SFQD +F Sbjct: 7 KHADMKGNKIRPSWFRSLADSDKTLGWLFTLPFLILWAWWFLYPFIQSFVRSFQDANFAA 66 Query: 71 PDAATFIGLQNYTEMLKDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTF 130 D A FIGL+NY +L+D +F+ AL +S I VI++P+Q+++ LL+A+ +N+ + K F Sbjct: 67 LDQAKFIGLENYVTILQDKEFFRALLHSLEIVVISIPIQTLLGLLLAILVNQKLKGKGIF 126 Query: 131 RTLFYLPYITSTVAVTTVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITV 190 RT+F++PYITS +A+TTVFM LF +Q TKFF G +V+W+A T YAL F+ ++ + Sbjct: 127 RTVFFIPYITSQIAITTVFMMLF-KQGTFLTKFFGALGFGNVTWFADTSYALLFVCILFI 185 Query: 191 WTYIGFYVVVYLGGLQNIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYA 250 + GF ++VYL GLQ IP D+YE+G +DGA+ W + RYIT+P LKP TF +++ I Sbjct: 186 FQQAGFTMIVYLSGLQEIPKDLYEAGEIDGASKWNKFRYITVPFLKPITFFIVSVSTIAG 245 Query: 251 LQLFDQPYALARNGSLGSPAGATSTIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXX 310 Q++DQ A++R G+LGSPAGATST+V YFY + GYGS Sbjct: 246 FQIYDQIAAISRYGALGSPAGATSTVVTYFYQHGIRYMNIGYGSAAVVLFFMIIMLITYL 305 Query: 311 QKRFVKE 317 QK+F+ E Sbjct: 306 QKKFLDE 312 >B0KAN2.1 B0KAN2_THEP3 Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/283 (37%), Positives = 169/283 (59%), Gaps = 3/283 (1%) Query: 36 GYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEMLKDGDFWGAL 95 GY FV P + + I+ PL+ +F+ SF++ SFLNP+A+ +IG NY ++ D F AL Sbjct: 18 GYAFVLPFIASISIFLIGPLIYAFIISFKEFSFLNPEASRWIGFANYIKLFSDPTFKRAL 77 Query: 96 KNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVTTVFMYLFMQ 155 N+ + ++ VP Q VIAL++A+ +N + KT FR +Y+P +TSTVAV+ +F+YLF + Sbjct: 78 LNTTLYSLGVVPTQLVIALILALIVNSDIKGKTFFRVAYYIPTVTSTVAVSVIFLYLF-K 136 Query: 156 QDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQNIPYDIYES 215 DG+ FG++ +W+ ++ALP ++++ +W+ +G Y+V++L GLQ+IP ++YE+ Sbjct: 137 ADGLVNALLAKFGIQGPTWFNDVRFALPSIMMMAIWSSVGNYMVIFLAGLQDIPSELYEA 196 Query: 216 GMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSLGSPAGATST 275 VDGAN +QR IT+PML+P F L LI Q+FDQ Y +++ G P AT T Sbjct: 197 AEVDGANKFQRFFKITLPMLRPIVFFNLVMSLIGTFQVFDQAYVVSQGT--GGPLDATMT 254 Query: 276 IVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKRFVKED 318 +V+ Y F GY S Q++ KE+ Sbjct: 255 VVLDIYRTGFRDFNMGYASAMAFVLFVIILILTLIQRKLFKEE 297 >Q8RBL6.1 Q8RBL6_THETN ABC-type sugar transport systems, permease components Length = 306 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 176/301 (58%), Gaps = 8/301 (2%) Query: 23 QIGLRLASSSKFV-----GYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFI 77 ++ R++ K++ GY+FV P + + I+ PL+ +F+ SF++ SFLNP A+ ++ Sbjct: 7 KVEARISLKRKYIYEALTGYIFVLPFIASISIFLIGPLIYAFIISFKEFSFLNPAASKWV 66 Query: 78 GLQNYTEMLKDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLP 137 GL NY + D F AL N+ + ++ VP Q +IAL++A+ +N + KT FR +Y+P Sbjct: 67 GLANYINLFSDPTFKKALLNTTLYSLGVVPTQLIIALILALIVNSDIKGKTFFRVAYYIP 126 Query: 138 YITSTVAVTTVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFY 197 ITS VAV+ +F+YLF + DG+ FG++ +W+ ++ALP ++++ VW+ +G Y Sbjct: 127 TITSMVAVSVIFLYLF-KTDGLVNMILAKFGIQGPTWFNDVRFALPSIMMMAVWSSVGNY 185 Query: 198 VVVYLGGLQNIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQP 257 +V++L GLQ+IP ++YE+ VDGAN Q+ IT+PML+P F L LI Q+FDQ Sbjct: 186 MVIFLAGLQDIPAELYEAAEVDGANKLQKFFNITLPMLRPVVFFNLVISLIGTFQVFDQA 245 Query: 258 YALARNGSLGSPAGATSTIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKRFVKE 317 Y ++R G P AT T+V+Y Y F GY S Q+ F KE Sbjct: 246 YVVSRGT--GGPLDATMTMVLYIYRTGFRDFNMGYASAMAFVLFVIILILTLIQRMFFKE 303 Query: 318 D 318 + Sbjct: 304 E 304 >B7R7E8.1 B7R7E8_9THEO ABC transporter, permease protein, putative Length = 306 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 176/301 (58%), Gaps = 8/301 (2%) Query: 23 QIGLRLASSSKFV-----GYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFI 77 ++ R++ K++ GY+FV P + + I+ PL+ +F+ SF++ SFLNP A+ ++ Sbjct: 7 KVEARISLKRKYIYEALTGYIFVLPFIASISIFLIGPLIYAFIISFKEFSFLNPAASKWV 66 Query: 78 GLQNYTEMLKDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLP 137 GL NY + D F AL N+ + ++ VP Q +IAL++A+ +N + KT FR +Y+P Sbjct: 67 GLANYINLFSDPTFKKALLNTTLYSLGVVPTQLIIALILALIVNSDIKGKTFFRVAYYIP 126 Query: 138 YITSTVAVTTVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFY 197 ITS VAV+ +F+YLF + DG+ FG++ +W+ ++ALP ++++ VW+ +G Y Sbjct: 127 TITSMVAVSVIFLYLF-KTDGLVNMILAKFGIQGPTWFNDVRFALPSIMMMAVWSSVGNY 185 Query: 198 VVVYLGGLQNIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQP 257 +V++L GLQ+IP ++YE+ VDGAN Q+ IT+PML+P F L LI Q+FDQ Sbjct: 186 MVIFLAGLQDIPAELYEAAEVDGANKLQKFFNITLPMLRPVVFFNLVISLIGTFQVFDQA 245 Query: 258 YALARNGSLGSPAGATSTIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKRFVKE 317 Y ++R G P AT T+V+Y Y F GY S Q+ F KE Sbjct: 246 YVVSRGT--GGPLDATMTMVLYIYRTGFRDFNMGYASAMAFVLFVIILILTLIQRMFFKE 303 Query: 318 D 318 + Sbjct: 304 E 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,778,041,383 Number of extensions: 72962033 Number of successful extensions: 272656 Number of sequences better than 1.0e-05: 6122 Number of HSP's gapped: 263050 Number of HSP's successfully gapped: 6145 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)