BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0007.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K659.1 B3K659_9BACI Binding-protein-dependent transport system... 208 1e-52 Q5WDA8.1 Q5WDA8_BACSK Sugar ABC transporter permease 183 4e-45 B3KC82.1 B3KC82_9BACI Binding-protein-dependent transport system... 180 4e-44 Q5WL51.1 Q5WL51_BACSK Polysaccharide ABC transporter permease 179 5e-44 B3KAE4.1 B3KAE4_9BACI Binding-protein-dependent transport system... 179 8e-44 >B3K659.1 B3K659_9BACI Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/155 (64%), Positives = 129/155 (83%), Gaps = 1/155 (0%) Query: 1 MWAVILPGAMDAFLIIIAKTFFEE-LPDELREAAAIDGAKNLRYLWSIVLPLSKPIIAVL 59 +WA+++PGA +II +TFF+ +PDE+ EAA+IDG N R+ WSIVLPLSK IIAV+ Sbjct: 144 IWALVIPGAGGIMNVIIVRTFFQSSIPDEMWEAASIDGCSNTRFFWSIVLPLSKSIIAVM 203 Query: 60 VLFAVVRQWNGFFDALIYLSDGDKFPLQLVLRNILIQSQPSGNMLMDIDNMLAKQRVTEL 119 VL+ VV WNGFFDALIYL+D K+PLQLVLRNIL+Q+Q + M++D+++ AK RVTEL Sbjct: 204 VLYHVVGFWNGFFDALIYLNDESKYPLQLVLRNILVQNQVNSGMMVDVESYAAKMRVTEL 263 Query: 120 IKFGVIIVSAVPLLALYPFLQRYFVKGVMVGSVKG 154 IK+GVIIVS++PLL LYPFLQ+YFVKGVM+GS+KG Sbjct: 264 IKYGVIIVSSLPLLILYPFLQKYFVKGVMIGSIKG 298 >Q5WDA8.1 Q5WDA8_BACSK Sugar ABC transporter permease Length = 296 Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/155 (57%), Positives = 120/155 (77%), Gaps = 1/155 (0%) Query: 1 MWAVILPGAMDAFLIIIAKTFFE-ELPDELREAAAIDGAKNLRYLWSIVLPLSKPIIAVL 59 +WA+++P A+ + +II +TFF+ +P ++ EAA IDG + R+ IVLPLSKPIIAV+ Sbjct: 142 IWAMVIPNAVGLWNVIICRTFFQTSIPKDMLEAAQIDGCDDFRFFAKIVLPLSKPIIAVM 201 Query: 60 VLFAVVRQWNGFFDALIYLSDGDKFPLQLVLRNILIQSQPSGNMLMDIDNMLAKQRVTEL 119 VLF VV WN FFDALIYL++ +PLQL+LRN+LIQS+ S M+ DI++ + V E Sbjct: 202 VLFHVVTHWNSFFDALIYLNNDSLYPLQLILRNLLIQSEASTQMIGDIESNQVQLAVAEQ 261 Query: 120 IKFGVIIVSAVPLLALYPFLQRYFVKGVMVGSVKG 154 IK+GVIIVS++PLL LYPFLQ+YFVKGVM+GS+KG Sbjct: 262 IKYGVIIVSSLPLLVLYPFLQKYFVKGVMIGSIKG 296 >B3KC82.1 B3KC82_9BACI Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 86/155 (55%), Positives = 118/155 (76%), Gaps = 1/155 (0%) Query: 1 MWAVILPGAMDAFLIIIAKTFFEE-LPDELREAAAIDGAKNLRYLWSIVLPLSKPIIAVL 59 +W +I+P A+ + III +TFF++ +P EL+EAA IDG N++ L I+LPLS PIIAV Sbjct: 140 LWVMIIPNAVSIWNIIIMRTFFQQSIPGELQEAATIDGCSNIKILTRIILPLSMPIIAVT 199 Query: 60 VLFAVVRQWNGFFDALIYLSDGDKFPLQLVLRNILIQSQPSGNMLMDIDNMLAKQRVTEL 119 +LF V WN FF+AL+YLSD DKFPLQL+LR ILIQ Q + + M ++ + +QR E Sbjct: 200 ILFYAVGHWNAFFNALLYLSDKDKFPLQLILREILIQGQTNDMVKMSTESAIKQQREVEG 259 Query: 120 IKFGVIIVSAVPLLALYPFLQRYFVKGVMVGSVKG 154 IK+ V++V+ +P+LALYPFLQRYFVKGVM+G++KG Sbjct: 260 IKYAVLVVANIPVLALYPFLQRYFVKGVMIGAIKG 294 >Q5WL51.1 Q5WL51_BACSK Polysaccharide ABC transporter permease Length = 292 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 87/155 (56%), Positives = 121/155 (78%), Gaps = 2/155 (1%) Query: 1 MWAVILPGAMDAFLIIIAKTFFEELPDELREAAAIDGAKNLRYLWSIVLPLSKPIIAVLV 60 +WAVI+PGA+ + ++I +TFF+ +P+ELRE+A +DG N++YL I+LPLSKP+IAV+V Sbjct: 139 IWAVIVPGAVSVYNVVIIRTFFQNIPNELRESAELDGCSNIQYLIKILLPLSKPVIAVMV 198 Query: 61 LFAVVRQWNGFFDALIYLSDGDKFPLQLVLRNILIQSQPSGNMLMDIDNMLAKQRVT-EL 119 LF V QWN FFDALIYL+D + FPLQL LR +LIQ Q S M+ D+ L +T E Sbjct: 199 LFYGVSQWNAFFDALIYLTDRNLFPLQLFLREMLIQDQLS-EMVQVSDSTLDNHALTVEG 257 Query: 120 IKFGVIIVSAVPLLALYPFLQRYFVKGVMVGSVKG 154 +K+ V++V+++P+L LYPFLQR+FVKGVM+GS+KG Sbjct: 258 LKYAVVVVASLPMLVLYPFLQRFFVKGVMIGSIKG 292 >B3KAE4.1 B3KAE4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 82/154 (53%), Positives = 121/154 (78%), Gaps = 1/154 (0%) Query: 2 WAVILPGAMDAFLIIIAKTFFEE-LPDELREAAAIDGAKNLRYLWSIVLPLSKPIIAVLV 60 WA+ILPGA+ F +I+A+TFF+ +PDEL EAA +DG ++R+++SIVLPLSKPIIAV+ Sbjct: 146 WAMILPGALGVFQVIVARTFFQTTIPDELAEAAELDGCSDIRFIFSIVLPLSKPIIAVMT 205 Query: 61 LFAVVRQWNGFFDALIYLSDGDKFPLQLVLRNILIQSQPSGNMLMDIDNMLAKQRVTELI 120 L V WN +FDALI+L D FPLQ++LRNILI + +M+ D+ M A+Q + +L+ Sbjct: 206 LMYAVGHWNAYFDALIFLRSPDLFPLQIILRNILILNSVDASMMADVSQMQAQQGLKDLL 265 Query: 121 KFGVIIVSAVPLLALYPFLQRYFVKGVMVGSVKG 154 K+ +I+V+++P+L +YPF+Q++FVKGVM+GS+KG Sbjct: 266 KYSLIVVASLPVLIIYPFVQKHFVKGVMIGSLKG 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.145 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 884,807,194 Number of extensions: 32802129 Number of successful extensions: 128279 Number of sequences better than 1.0e-05: 4688 Number of HSP's gapped: 124432 Number of HSP's successfully gapped: 4688 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)