BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0596.0006.p
         (132 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K659.1 B3K659_9BACI Binding-protein-dependent transport system...   133   5e-30
Q5WDA8.1 Q5WDA8_BACSK Sugar ABC transporter permease                  132   9e-30
A0JS08.1 A0JS08_ARTS2 Binding-protein-dependent transport system...   115   9e-25
B3K7Z3.1 B3K7Z3_9BACI Binding-protein-dependent transport system...   114   3e-24
Q8ELL6.1 Q8ELL6_OCEIH Hypothetical conserved protein                  111   2e-23

>B3K659.1 B3K659_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 298

 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 82/124 (66%)

Query: 1   MLKRKTKSDLAFDMINYLFLGCFTLMILYPLYFIVIASISDPNKIYSGDVWLLPQNITFD 60
           +LK K++ D  FD INY FL    L++L+PLYF++IAS SDPN IYSG+VWL P+  T D
Sbjct: 4   LLKSKSRGDAWFDAINYFFLTVVMLIVLFPLYFVLIASFSDPNLIYSGEVWLFPKGFTLD 63

Query: 61  GYKRIFSDGSIWNGYKNSILYAVLNGFVSTTLVIMAAYPLSRKDFYGRNVXXXXXXXXXX 120
           GY+RIF+D SIW GY NS+LYA +   +   + + AAYPL+RKD  GR V          
Sbjct: 64  GYERIFNDSSIWIGYANSLLYAGIGTLIGVAVTVFAAYPLARKDLVGRPVIMWFLLITMF 123

Query: 121 XNGG 124
            +GG
Sbjct: 124 FSGG 127


>Q5WDA8.1 Q5WDA8_BACSK Sugar ABC transporter permease
          Length = 296

 Score =  132 bits (332), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 86/121 (71%)

Query: 4   RKTKSDLAFDMINYLFLGCFTLMILYPLYFIVIASISDPNKIYSGDVWLLPQNITFDGYK 63
           ++T+ D AFD++N   L    L++LYPLYFIVIASISDPN++++GDV LLP++ITFDG+K
Sbjct: 5   KRTRGDKAFDIVNVTLLTIGCLLVLYPLYFIVIASISDPNRVFAGDVLLLPKDITFDGFK 64

Query: 64  RIFSDGSIWNGYKNSILYAVLNGFVSTTLVIMAAYPLSRKDFYGRNVXXXXXXXXXXXNG 123
           RIF D +I NG+KN++LYA L   +S +L + + Y LSRKD  GR++           +G
Sbjct: 65  RIFQDDNIVNGFKNTLLYATLGTAISVSLTVTSGYALSRKDLPGRHIIMMFLVVTLFFHG 124

Query: 124 G 124
           G
Sbjct: 125 G 125


>A0JS08.1 A0JS08_ARTS2 Binding-protein-dependent transport systems inner
           membrane component
          Length = 320

 Score =  115 bits (289), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 73/121 (60%)

Query: 4   RKTKSDLAFDMINYLFLGCFTLMILYPLYFIVIASISDPNKIYSGDVWLLPQNITFDGYK 63
           R   +D AF++     L    + ++YPLYFIVIASISDPN +Y G VWL P  +T +GY+
Sbjct: 27  RDRWADSAFNIAAVTILSLSIIAVVYPLYFIVIASISDPNAVYEGKVWLFPSGVTLEGYQ 86

Query: 64  RIFSDGSIWNGYKNSILYAVLNGFVSTTLVIMAAYPLSRKDFYGRNVXXXXXXXXXXXNG 123
           RIF+D  IWNG  N+++Y +L   +S T ++  AY LSRKD  GR +           +G
Sbjct: 87  RIFADSRIWNGLANTVIYTLLGSAISVTTILFGAYALSRKDMPGRKILMLLFVVTMFFDG 146

Query: 124 G 124
           G
Sbjct: 147 G 147


>B3K7Z3.1 B3K7Z3_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 302

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 75/106 (70%)

Query: 4   RKTKSDLAFDMINYLFLGCFTLMILYPLYFIVIASISDPNKIYSGDVWLLPQNITFDGYK 63
           R++K D  F + NY++L    +++LYPL +IV ASISDP  + SG++WL+P+ ITFDGY 
Sbjct: 6   RESKGDKLFLLCNYIYLTIALIIVLYPLLYIVSASISDPKYVSSGEMWLIPKGITFDGYA 65

Query: 64  RIFSDGSIWNGYKNSILYAVLNGFVSTTLVIMAAYPLSRKDFYGRN 109
           R+F + +IW GYKN+I+Y V+   V+  + + AAY LSR DF GR 
Sbjct: 66  RVFENANIWIGYKNTIIYTVIGTIVNLIVTLPAAYALSRSDFVGRG 111


>Q8ELL6.1 Q8ELL6_OCEIH Hypothetical conserved protein
          Length = 298

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 79/123 (64%)

Query: 2   LKRKTKSDLAFDMINYLFLGCFTLMILYPLYFIVIASISDPNKIYSGDVWLLPQNITFDG 61
           + R + SD AFD +N LF+   T++++YPL F++ ASISDP  + +G +WL P +ITFDG
Sbjct: 1   MSRFSLSDKAFDRLNILFVSIITIIVIYPLIFVLSASISDPQAVNTGKMWLWPVDITFDG 60

Query: 62  YKRIFSDGSIWNGYKNSILYAVLNGFVSTTLVIMAAYPLSRKDFYGRNVXXXXXXXXXXX 121
           ++R+F + +IW GYKN+ILY ++   +   +++ AAY LSRK+  G+             
Sbjct: 61  FQRVFQNDAIWTGYKNTILYTIVGVLIHLFVLLPAAYALSRKELMGKKFWLWFILFTMLF 120

Query: 122 NGG 124
           NGG
Sbjct: 121 NGG 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 691,526,015
Number of extensions: 25597680
Number of successful extensions: 78872
Number of sequences better than 1.0e-05: 424
Number of HSP's gapped: 79734
Number of HSP's successfully gapped: 424
Length of query: 132
Length of database: 3,060,696,203
Length adjustment: 97
Effective length of query: 35
Effective length of database: 2,146,857,748
Effective search space: 75140021180
Effective search space used: 75140021180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)