BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0005.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K660.1 B3K660_9BACI Binding-protein-dependent transport system... 377 e-103 Q5WDA7.1 Q5WDA7_BACSK Sugar ABC transporter permease 355 3e-96 A0JS09.1 A0JS09_ARTS2 Binding-protein-dependent transport system... 340 1e-91 B3KC81.1 B3KC81_9BACI Binding-protein-dependent transport system... 335 2e-90 C0W7Z4.1 C0W7Z4_9ACTO ABC superfamily ATP binding cassette trans... 335 4e-90 >B3K660.1 B3K660_9BACI Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/286 (62%), Positives = 225/286 (78%), Gaps = 1/286 (0%) Query: 1 LILIPVAY-FTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGN 59 L L+P+ + +FKY+PMYGVQIAFKDF S+G+WGSEWVG +HF FF SYNF I+ N Sbjct: 31 LFLLPIILVYLLFKYYPMYGVQIAFKDFSPSQGIWGSEWVGFQHFIDFFNSYNFWTIMKN 90 Query: 60 TXXXXXXXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSP 119 T MLNQ+ ++ KKFIQT IYAP+FISTVVLVGML +FLSP Sbjct: 91 TLTLSFLSLVFSFPAPIIIAIMLNQMLGKRYKKFIQTVIYAPHFISTVVLVGMLHVFLSP 150 Query: 120 TSGLVNHIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEA 179 SGLVN I+T FGGEPI+FM +E WFRPLYI S +WQETGFA++IYLAALAG++P LHEA Sbjct: 151 NSGLVNLIITWFGGEPILFMADEGWFRPLYILSGIWQETGFATIIYLAALAGVNPELHEA 210 Query: 180 AVMDGASKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPT 239 A+MDGASKW R+ ++D+P I PTI++L I+A+GN+M++GFEKAFLMQ+DLN ATS IIPT Sbjct: 211 AIMDGASKWKRVWYVDIPSILPTIVILLILALGNVMSIGFEKAFLMQSDLNYATSNIIPT 270 Query: 240 YVYKVGIQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 YVY++GIQ+A+YSFS A+GLFNSVIN+IL+V VN+ KK++ L+ Sbjct: 271 YVYELGIQKAQYSFSTAVGLFNSVINIILIVTVNRVAKKLTETSLW 316 >Q5WDA7.1 Q5WDA7_BACSK Sugar ABC transporter permease Length = 323 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 167/280 (59%), Positives = 213/280 (76%) Query: 6 VAYFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGNTXXXXX 65 + YF IFKY+PMYG+QIAFK+++ S GVWGSEWVGL+HF RFF+SY F I+ NT Sbjct: 44 IIYFLIFKYYPMYGLQIAFKNYLPSLGVWGSEWVGLDHFMRFFQSYQFWTILENTLVLSI 103 Query: 66 XXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSPTSGLVN 125 MLN L K K+F+QT +YAP+FIS VVLVG+LF+FLSP+SGL+N Sbjct: 104 YELAVGFPLPILLALMLNMLISHKYKRFLQTVVYAPHFISVVVLVGILFVFLSPSSGLIN 163 Query: 126 HIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEAAVMDGA 185 H++ FGGEPI FM +WF+ LY+FS VWQ TGFA++IYLAAL+G+DP LHEAAVMDGA Sbjct: 164 HLIGLFGGEPINFMASPEWFKTLYVFSGVWQGTGFAAIIYLAALSGVDPSLHEAAVMDGA 223 Query: 186 SKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPTYVYKVG 245 SK+ R+ HID+P I P +++ I+A+GNLMN+GFEKA LMQT LN +S II TYVY+VG Sbjct: 224 SKFKRMLHIDIPAIMPISVIMLILALGNLMNIGFEKALLMQTPLNKESSNIIATYVYEVG 283 Query: 246 IQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 IQ+A+YSF A+GLFN++INLILLV VN+ +K+S L+ Sbjct: 284 IQQAQYSFGTAVGLFNAIINLILLVTVNQIARKMSDSSLW 323 >A0JS09.1 A0JS09_ARTS2 Binding-protein-dependent transport systems inner membrane component Length = 326 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 160/286 (55%), Positives = 210/286 (73%), Gaps = 1/286 (0%) Query: 1 LILIP-VAYFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGN 59 ++L+P + Y +FKYWPMYGVQIAF+++ G GS WVGL+HF RF SY F Q+VGN Sbjct: 41 VLLVPALIYIAVFKYWPMYGVQIAFRNYNPVDGFTGSPWVGLQHFIRFINSYQFSQVVGN 100 Query: 60 TXXXXXXXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSP 119 T ++NQL+ ++ KKF QT +Y+P FISTVV+VG++F+ LSP Sbjct: 101 TLWIAVLGLLVAFPIPIILALLVNQLQSERFKKFTQTVLYSPAFISTVVVVGIMFVLLSP 160 Query: 120 TSGLVNHIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEA 179 SGLVN+ + GGEP+ FMG +WFRP+Y+ S VWQ GFA ++YLAAL+GIDP LH+A Sbjct: 161 RSGLVNNAIQLAGGEPVFFMGSAEWFRPIYVISDVWQNAGFAMIVYLAALSGIDPALHDA 220 Query: 180 AVMDGASKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPT 239 A +DGASK RIRHIDLPGI P I VLFI+A+GNL+NVGFEKA LMQT+LN+ TSEII T Sbjct: 221 AKVDGASKLQRIRHIDLPGIMPVITVLFILAIGNLLNVGFEKALLMQTNLNLPTSEIIQT 280 Query: 240 YVYKVGIQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 YVY G+Q+A++S+SAAIGLFNS++NL+LL+ N ++ + L+ Sbjct: 281 YVYHAGLQQAQFSYSAAIGLFNSILNLVLLLTFNWVARRANQATLW 326 >B3KC81.1 B3KC81_9BACI Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 156/280 (55%), Positives = 209/280 (74%) Query: 6 VAYFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGNTXXXXX 65 +AY+ +F+Y PMYG+QIAFKDF+A++G+WGS WVG EHF RFF SY F +++ NT Sbjct: 40 IAYYVLFQYVPMYGIQIAFKDFIATQGIWGSPWVGFEHFDRFFNSYYFWRLIKNTLGIGL 99 Query: 66 XXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSPTSGLVN 125 ++N++R ++ KKF+QT YAP+F+STVV+VGM+ IFLSP G++N Sbjct: 100 YSLAVGFPIPIILALLMNEVRAERFKKFVQTITYAPHFLSTVVVVGMMMIFLSPRYGIIN 159 Query: 126 HIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEAAVMDGA 185 H + FGG+PI FM E WF+ LY+ S VWQ G++S+IYLAALAGID LHEAA +DGA Sbjct: 160 HFIEMFGGQPINFMTEPSWFKSLYVLSDVWQTMGWSSIIYLAALAGIDNQLHEAARVDGA 219 Query: 186 SKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPTYVYKVG 245 ++ RI HI++PGI PTII+L I+ +G++M +GFEK LMQ +LN+ +S+II TYVY++G Sbjct: 220 TRLQRIWHINIPGIMPTIIILLILNMGSIMGIGFEKVLLMQNNLNMESSDIIATYVYRMG 279 Query: 246 IQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 IQ AEYSFSAAIGLFNSVIN ILLV VN +K++S L+ Sbjct: 280 IQNAEYSFSAAIGLFNSVINFILLVAVNFISKRVSETSLW 319 >C0W7Z4.1 C0W7Z4_9ACTO ABC superfamily ATP binding cassette transporter, membrane protein Length = 294 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 156/286 (54%), Positives = 207/286 (72%), Gaps = 1/286 (0%) Query: 1 LILIP-VAYFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGN 59 L+L P V Y +FKYWPMYGVQIAF+++ G GSEWVGLEH RF S+ F ++ N Sbjct: 9 LLLAPAVIYLIVFKYWPMYGVQIAFRNYNPIDGFMGSEWVGLEHISRFLHSFQFSRVFVN 68 Query: 60 TXXXXXXXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSP 119 T ++NQL +++K FIQT +++P FISTVV+VGMLF+ LSP Sbjct: 69 TIAINVLGLVFGFPVPIVLALLINQLGSRRLKSFIQTVLFSPAFISTVVVVGMLFVLLSP 128 Query: 120 TSGLVNHIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEA 179 SGLVN++++ GG P+ FM EE WFRP+Y+ S +WQ GF+ +IYLAALAGIDP LHEA Sbjct: 129 RSGLVNNVISLAGGTPVSFMNEEGWFRPIYVLSDIWQNAGFSMIIYLAALAGIDPSLHEA 188 Query: 180 AVMDGASKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPT 239 A +DGA++W R+ HIDLPGI P I+++ I+AVGNL+N+GFEKA LMQTDLN+ TS+II T Sbjct: 189 ARVDGANRWQRLWHIDLPGIRPVILIMLILAVGNLLNIGFEKALLMQTDLNLGTSQIIQT 248 Query: 240 YVYKVGIQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 YVY VG++ A++S+SAAI LFN V+N+ILL++ N+ K+ LF Sbjct: 249 YVYDVGLKSAQFSYSAAISLFNYVLNMILLLVFNQGAKRAGQTSLF 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,547,282,772 Number of extensions: 59392550 Number of successful extensions: 260935 Number of sequences better than 1.0e-05: 4269 Number of HSP's gapped: 258374 Number of HSP's successfully gapped: 4269 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)