BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0002.p (357 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5YAE4.1 B5YAE4_DICT6 Transcriptional regulator 225 4e-57 B8E3A6.1 B8E3A6_DICTD Transcriptional regulator, LacI family 218 8e-55 A4IPW5.1 A4IPW5_GEOTN Transcriptional regulator 210 2e-52 B4BNM9.1 B4BNM9_9BACI Transcriptional regulator, LacI family 210 2e-52 Q5KY36.1 Q5KY36_GEOKA Transcriptional regulator 208 6e-52 >B5YAE4.1 B5YAE4_DICT6 Transcriptional regulator Length = 342 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 126/337 (37%), Positives = 199/337 (59%), Gaps = 10/337 (2%) Query: 26 EKKNVSIKDVALRANVSTATVSHVINGTRFVSNETKQKVHFAMNELNFRINSVARSLRSR 85 E K+ ++KDVA A VS +TVSHVIN TR+V ET++KV+ A+ L +R N +A SLR R Sbjct: 5 ENKSPTMKDVARLAGVSISTVSHVINKTRYVEPETREKVYQAIKTLGYRPNILASSLRKR 64 Query: 86 RSYIIAFLAPILASETSNFYFMSVAAGVQSVLKQRGYHLILSDSSDNVEAENKEISMFDS 145 + I ++ S +N ++ V GV+ +L + Y+LIL +S ++VE E I + S Sbjct: 65 VTNTIG----LIISNITNLFYPEVVRGVEDLLAKYNYNLILCNSDEDVEKEKNYIEVLFS 120 Query: 146 QMIDGLIVAPASRDSDYEQL----FGDYPVVYIDRVPNHCERDSVLIDNKTVTKEATQRI 201 + +DGLI+ P+ E L + PVV +DR E D VL DN T EA + Sbjct: 121 RRVDGLIITPSKSSETRENLDLFREKNIPVVLVDRKIEGLEEDVVLADNIEGTYEAISYL 180 Query: 202 LDKGHRKIAFLSGPLSVTTTIERYEGYSETLKNAGLELDDSLICFEEVSFENGYNKMGDL 261 + GH++I ++GPL TT ER EGY + L++ G++ DD+LI + E GY + L Sbjct: 181 ISLGHKRIGIITGPLDTTTGCERLEGYLKALEDKGIKKDDNLIYEGDFKKEGGYKGVEAL 240 Query: 262 LE--KKPTAIFVTDNVMAMGAMTYLQDHSIRIPDQLAVVGFDDVQWTRVTHPPLTVIQQP 319 L PTAIF ++N+MA+GA+ + + ++IP L+++ FDD+ W PPLT + QP Sbjct: 241 LNINNPPTAIFTSNNLMALGALKKITELGLKIPQDLSLISFDDMDWFPYFSPPLTAVYQP 300 Query: 320 SFQLGVKTAEVILQRIEDGTSGKEEHRLKANFLVRQS 356 +++LG +++ +R++ G ++E RL ++R+S Sbjct: 301 AYELGETAVKLLFERLKRGRKKRKEVRLPTKLIIRES 337 >B8E3A6.1 B8E3A6_DICTD Transcriptional regulator, LacI family Length = 342 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 197/341 (57%), Gaps = 10/341 (2%) Query: 22 IKMTEKKNVSIKDVALRANVSTATVSHVINGTRFVSNETKQKVHFAMNELNFRINSVARS 81 ++ E K+ ++KDVA A VS +TVSHVIN TR+V ET++KV+ A+ L +R N +A S Sbjct: 1 MRRKENKSPTMKDVAKLAGVSISTVSHVINKTRYVEPETREKVYRAIKTLGYRPNILASS 60 Query: 82 LRSRRSYIIAFLAPILASETSNFYFMSVAAGVQSVLKQRGYHLILSDSSDNVEAENKEIS 141 LR + + I ++ S +N ++ V GV+ L + Y+LIL +S +NVE E I Sbjct: 61 LRKKVTNTIG----LIISNITNLFYPEVVRGVEDYLAKYNYNLILCNSDENVEKEKNYIE 116 Query: 142 MFDSQMIDGLIVAPASRDSDYEQL----FGDYPVVYIDRVPNHCERDSVLIDNKTVTKEA 197 + S+ +DGLI+ P+ E L + PVV +DR E D VL DN T EA Sbjct: 117 VLFSRRVDGLIITPSKSSETRENLDLFREKNIPVVLVDRKIEGLEEDVVLADNVGGTYEA 176 Query: 198 TQRILDKGHRKIAFLSGPLSVTTTIERYEGYSETLKNAGLELDDSLICFEEVSFENGYNK 257 ++ GH++I ++GPL TT ER EGY + L+ +G+ DD+LI + GY Sbjct: 177 INYLISLGHKRIGIITGPLDTTTGYERLEGYFKALEESGINKDDNLIYEGNFKEDGGYKG 236 Query: 258 MGDLL--EKKPTAIFVTDNVMAMGAMTYLQDHSIRIPDQLAVVGFDDVQWTRVTHPPLTV 315 + LL PTA+F ++N+MA+GA+ + + ++IP L+++ FDD+ W PPLT Sbjct: 237 IEVLLNISNPPTAVFTSNNLMALGALKKITELGLKIPKDLSLISFDDMDWFPYFSPPLTA 296 Query: 316 IQQPSFQLGVKTAEVILQRIEDGTSGKEEHRLKANFLVRQS 356 + QP+++LG +++ +R++ G ++E L ++R+S Sbjct: 297 VYQPAYELGETAVKLLFERLKRGRKKRKEVILPTKLIIRES 337 >A4IPW5.1 A4IPW5_GEOTN Transcriptional regulator Length = 334 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 192/329 (58%), Gaps = 7/329 (2%) Query: 31 SIKDVALRANVSTATVSHVINGTRFVSNETKQKVHFAMNELNFRINSVARSLRSRRSYII 90 SIKDVA RANVSTATVS V+ V+ ETKQ+V A+ LN++ N + R LR + + Sbjct: 3 SIKDVAKRANVSTATVSRVLRNAGNVTEETKQRVLEAIEALNYQPNVLGRYLRRMETETV 62 Query: 91 AFLAPILASETSNFYFMSVAAGVQSVLKQRGYHLILSDSSDNVEAENKEISMFDSQMIDG 150 + P + +N +F V G+++V + GY ++L D+ ++ + E + +++ + +DG Sbjct: 63 LVVVP----DITNPFFSKVLRGIEAVALEHGYQVLLGDTQNDAQLEEQYLNVLPQRQVDG 118 Query: 151 LIVAPAS-RDSDYEQLFGDYPVVYIDRVPNHCERDSVLIDNKTVTKEATQRILDKGHRKI 209 +I A R E++ +P+V + +V IDN + ++AT+ ++ GHR+I Sbjct: 119 MIFLTARIRKELMEEMARQFPIVLACEYLEGTDIPTVSIDNISSARKATEHLIHLGHRRI 178 Query: 210 AFLSGPLSVTTTIERYEGYSETLKNAGLELDDSLICFEEVSFENGYNKMGDLL--EKKPT 267 A LSGP+ V +R GY + L G++ D +L+ + S+E+GYN LL E+ PT Sbjct: 179 AHLSGPMDVILGRDRLRGYYQALAQHGIDADPALVQEGDFSYESGYNMTLKLLALEEPPT 238 Query: 268 AIFVTDNVMAMGAMTYLQDHSIRIPDQLAVVGFDDVQWTRVTHPPLTVIQQPSFQLGVKT 327 AIF ++ MA+GA+ ++ R+PD +AVVGFDD+Q + P +T I QP+F++G K Sbjct: 239 AIFAANDEMAIGAIKAIRHRGGRVPDDVAVVGFDDIQMASIFEPAVTTIAQPTFEIGQKA 298 Query: 328 AEVILQRIEDGTSGKEEHRLKANFLVRQS 356 E++LQ IE + + L + ++R+S Sbjct: 299 MELLLQLIEGNEVSRRQLVLPDHLVIRES 327 >B4BNM9.1 B4BNM9_9BACI Transcriptional regulator, LacI family Length = 334 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 192/329 (58%), Gaps = 7/329 (2%) Query: 31 SIKDVALRANVSTATVSHVINGTRFVSNETKQKVHFAMNELNFRINSVARSLRSRRSYII 90 SIKDVA RANVSTATVS V+ V+ ETKQ+V A+ LN++ N + R LR + + Sbjct: 3 SIKDVAKRANVSTATVSRVLRNAGNVTEETKQRVLEAIEALNYQPNVLGRYLRRMETETV 62 Query: 91 AFLAPILASETSNFYFMSVAAGVQSVLKQRGYHLILSDSSDNVEAENKEISMFDSQMIDG 150 + P + +N +F V G+++V + GY ++L D+ ++ + E + +++ + +DG Sbjct: 63 LVVVP----DITNPFFSKVLRGIEAVALEHGYQVLLGDTQNDAQLEEQYLNVLPQRQVDG 118 Query: 151 LIVAPAS-RDSDYEQLFGDYPVVYIDRVPNHCERDSVLIDNKTVTKEATQRILDKGHRKI 209 +I A R E++ +P+V + +V IDN + ++AT+ ++ GHR+I Sbjct: 119 MIFLTARIRKELMEEMARQFPIVLACEYLEGTDIPTVSIDNISSARKATEHLIHLGHRRI 178 Query: 210 AFLSGPLSVTTTIERYEGYSETLKNAGLELDDSLICFEEVSFENGYNKMGDLL--EKKPT 267 A LSGP+ V +R GY + L G++ D +L+ + S+E+GYN LL E+ PT Sbjct: 179 AHLSGPMDVILGRDRLRGYYQALAQHGIDADPALVQEGDFSYESGYNMTLKLLALEEPPT 238 Query: 268 AIFVTDNVMAMGAMTYLQDHSIRIPDQLAVVGFDDVQWTRVTHPPLTVIQQPSFQLGVKT 327 AIF ++ MA+GA+ ++ R+PD +AVVGFDD+Q + P +T I QP+F++G K Sbjct: 239 AIFAANDEMAIGAIKAIRHRGGRVPDDVAVVGFDDIQMASIFEPAVTTIAQPTFEIGQKA 298 Query: 328 AEVILQRIEDGTSGKEEHRLKANFLVRQS 356 E++LQ IE + + L + ++R+S Sbjct: 299 MELLLQLIEGNEVSRRQLVLPDHLVIRES 327 >Q5KY36.1 Q5KY36_GEOKA Transcriptional regulator Length = 337 Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 191/329 (58%), Gaps = 7/329 (2%) Query: 31 SIKDVALRANVSTATVSHVINGTRFVSNETKQKVHFAMNELNFRINSVARSLRSRRSYII 90 SIKDVA RANVSTATVS V+ V+ ET+Q+V A+ LN++ N + R LR + + Sbjct: 3 SIKDVAKRANVSTATVSRVLRNAGNVTEETRQRVLEAIEALNYQPNVLGRYLRRMETETV 62 Query: 91 AFLAPILASETSNFYFMSVAAGVQSVLKQRGYHLILSDSSDNVEAENKEISMFDSQMIDG 150 + P + +N +F V G+++V + GY ++L D+ ++V E + +++ + +DG Sbjct: 63 LVVVP----DITNPFFSKVLRGIEAVALEHGYQVLLGDTQNDVRLEEQYLNLLPQRQVDG 118 Query: 151 LIVAPAS-RDSDYEQLFGDYPVVYIDRVPNHCERDSVLIDNKTVTKEATQRILDKGHRKI 209 +I A R E++ +P+V + +V IDN + ++AT+ ++ GHR+I Sbjct: 119 MIFLTARIRKELVEEMARQFPIVLACEYLEGADIPTVSIDNISSARKATEHLIRLGHRRI 178 Query: 210 AFLSGPLSVTTTIERYEGYSETLKNAGLELDDSLICFEEVSFENGYNKMGDLL--EKKPT 267 A LSGP+++ + +R GY + L LE D +L+ + ++E+GYN LL EK PT Sbjct: 179 AHLSGPMNIILSRDRLRGYQQALAQHELEADAALVQEGDFTYESGYNLTLKLLALEKPPT 238 Query: 268 AIFVTDNVMAMGAMTYLQDHSIRIPDQLAVVGFDDVQWTRVTHPPLTVIQQPSFQLGVKT 327 AIF ++ MA+GA+ ++ R+PD +AVVGFDD+Q + P LT I QP F++G K Sbjct: 239 AIFAANDEMAIGAIKAVRHRGGRVPDDVAVVGFDDIQMASIFEPSLTTIAQPMFEIGQKA 298 Query: 328 AEVILQRIEDGTSGKEEHRLKANFLVRQS 356 E++L IE ++ + + L ++R S Sbjct: 299 MELLLALIEGTSARRRQLVLPDRLVIRDS 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,948,638,632 Number of extensions: 75522111 Number of successful extensions: 224422 Number of sequences better than 1.0e-05: 9222 Number of HSP's gapped: 204875 Number of HSP's successfully gapped: 9229 Length of query: 357 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 220 Effective length of database: 1,770,017,148 Effective search space: 389403772560 Effective search space used: 389403772560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)