BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0594.0005.p (351 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q24T34.1 Q24T34_DESHY Putative uncharacterized protein 238 8e-61 C2ED52.1 C2ED52_9LACO Putative uncharacterized protein 166 2e-39 Q18CY0.1 Q18CY0_CLOD6 Putative CDP-Glycerol:Poly(Glycerophosphat... 165 8e-39 C2ED61.1 C2ED61_9LACO Putative uncharacterized protein 135 9e-30 C2KU50.1 C2KU50_9FIRM Possible LPS biosynthesis protein 128 9e-28 >Q24T34.1 Q24T34_DESHY Putative uncharacterized protein Length = 803 Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 177/296 (59%), Gaps = 27/296 (9%) Query: 69 IHMGEFIENFEGEDTRTVELLTEYHTSLYNIAMEIETIHVSFIKQLKKELRMIENSIRNE 128 I +GEFIE+ EGE T+TV LL Y+ SLY IA EIETI +SF K+L+K+L IENSI++E Sbjct: 2 IKIGEFIESLEGEGTKTVALLERYYESLYPIAEEIETIDISFYKRLQKQLITIENSIKSE 61 Query: 129 LKPKKIEVVFFPYKASMWDSLESVWMAANEDAQCDAYVVPIPYYDRKPDGSFGEFHYEGG 188 KIEV F PY ASMWDSLES+W+AA +D QCDAY VPIPYY+ D + HYEG Sbjct: 62 FGAGKIEVAFLPYNASMWDSLESIWLAAKKDPQCDAYCVPIPYYELTRDRRLEKMHYEGA 121 Query: 189 DL-PDYVPVTHYESYDISIRRPDVIYIHNPYDIYNTVTSVDPRFYSHELKKYTDTLVYIP 247 D D+V +T++ YDI RRPDVI+IH YD ++ P FYS L++Y + LVY+P Sbjct: 122 DCYDDHVEITNWREYDIRTRRPDVIFIHYAYDDMAGNATIHPEFYSKILREYCECLVYVP 181 Query: 248 YYSTSGG-MSEGQKSCSAYYHADYIITQAEKYRGFFDSSFSK----------------KL 290 Y+ TS + E S +A+Y++ Q+E R + + K K Sbjct: 182 YFITSASTIEEYSASLPGVLYANYVMVQSEAIRQSYIRHYKKFNEEHSLNFCFGKAEEKF 241 Query: 291 LPLGSPKFDRVVRICNNPP--EPPAAWK---AKMTG--KKVYFYNTSINGLLSNTQ 339 + +GSPK D+ IC+N E P AW+ K G KKV FYNT + L N + Sbjct: 242 VAMGSPKLDKA--ICSNESDYELPLAWRQLICKENGEKKKVIFYNTHMFVWLKNGE 295 >C2ED52.1 C2ED52_9LACO Putative uncharacterized protein Length = 489 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 173/336 (51%), Gaps = 45/336 (13%) Query: 23 MRKHQQEQIQKLVTTLYEATDEINRQFSKNN-IPTVINLLRDCQDAAIHMGEFIENFEG- 80 MRK E++ K V + + E+ R F N+ I IN L C D +M +N + Sbjct: 1 MRKKTSEKLLKCVDDILSSL-EMFRNFKGNSYISAKINKL--CSD---NMAALEKNSDSI 54 Query: 81 EDTRTVELLTEYHTSLYNIAMEIETIHVSFIKQLKKELRMIENSIRNELKPKKI--EVVF 138 ++ +ELL ++ S+ I +E + +S K+LK EL K + +VVF Sbjct: 55 KNKEYLELLDKFKESVSKINLE-DAAEIS--KRLK------------ELISKSVIYKVVF 99 Query: 139 FPYKASMWDSLESVWMAANEDAQCDAYVVPIPYYDRKPDGSFGEFHYEGGDLPDYVPVTH 198 PYKASMWDSLES+WMAA++D +C+ VVPI YY+ + E P+YV + Sbjct: 100 MPYKASMWDSLESIWMAADKDERCETLVVPITYYELDSNQDKKNKINERDLFPEYVNTIN 159 Query: 199 YESYDISIRRPDVIYIHNPYDIYNTVTSVDPRFYSHELKKYTDTLVYIPYYSTSGGMSEG 258 E YD+ PD+IYIHNPYD N VT VD R+YS LKKY + LVY+PYY G+S Sbjct: 160 DEEYDLENDLPDIIYIHNPYDNTNLVTRVDSRYYSWNLKKYCEKLVYVPYYKWVDGVSSA 219 Query: 259 QKSCSAYYHADYIITQAE-----------KYRGFFD-------SSFSKKLLPLGSPKFDR 300 SA Y+ADY + ++ +Y + KKL+ LGSP+ D+ Sbjct: 220 SFK-SAMYYADYTVQSSDDAVKRCIEASPEYATILGLETIVVRKAMEKKLINLGSPEVDK 278 Query: 301 VVRICNNPPEPPAAWKAKMTGKKV-YFYNTSINGLL 335 V+ + + P WK K+ +V YNT+++ + Sbjct: 279 VLSLSKDNVPMPDDWKGKVIKSRVNVVYNTTLDEIF 314 >Q18CY0.1 Q18CY0_CLOD6 Putative CDP-Glycerol:Poly(Glycerophosphate) glycerophosphotransferase Length = 494 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 103/320 (32%), Positives = 168/320 (52%), Gaps = 19/320 (5%) Query: 21 SLMRKHQQEQIQKLVTTLYEATDEINRQFSKNNIPTVINLLRDCQDAAIHMGEFIENFEG 80 +LM +++ ++ L+ L E D I NN+ I + +A +M ++I N Sbjct: 2 NLMNYNKKNEVLNLIQILIEGIDYI----KNNNLSESI--VNSSLEAINYMKKYINNSGR 55 Query: 81 EDTRTVELLTEYHTSLYNIAMEIETIHVSFIKQLKKELRMIENSIRNELKPKKIEVVFFP 140 + + L+ E + + ++M + + + L + N I N L KK ++VF P Sbjct: 56 SNKNLLNLIDETYVKILRLSMYKNIRLIEDCELIISNLNYLSNIIENSLN-KKTKIVFMP 114 Query: 141 YKASMWDSLESVWMAANEDAQCDAYVVPIPYYD--RKPDGSFGEFHYEGGDLPDYVPVTH 198 Y A MW+SLES+W +A D QCD YVVPIPYY P+G + YEG D P+ VPV H Sbjct: 115 YNAKMWNSLESIWKSAVLDEQCDCYVVPIPYYKLIDTPNGITQIYTYEGNDFPEDVPVIH 174 Query: 199 YESYDISIRRPDVIYIHNPYDIYNTVTSVDPRFYSHELKKYTDTLVYIPY-----YSTSG 253 Y+ +D+S +PD+IY+HN YD N T VD ++S+ LK+YT+ LVY+ Y Y S Sbjct: 175 YDDFDLSKEKPDIIYVHNQYDDCNNATMVDSNYFSYNLKQYTNMLVYVAYGILGTYPVSF 234 Query: 254 GMSEGQKSCSAYYHADYIITQAEKYRGFFDSSFSKK--LLPLGSPKFDRVVRICNNPPEP 311 ++ + S + D +I Q+ + + S K +L +GSPKFD ++ Sbjct: 235 YLNFYELIASRNF--DKVIVQSPAFEIIAECSGINKNQILTMGSPKFDSLIYNL-KQKNI 291 Query: 312 PAAWKAKMTGKKVYFYNTSI 331 +++K+ GK ++ + T++ Sbjct: 292 NKNYESKLKGKIIFLWTTNL 311 >C2ED61.1 C2ED61_9LACO Putative uncharacterized protein Length = 498 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 22/226 (9%) Query: 114 LKKELRMIENSIRNELKPKKIEVVFFPYKASMWDSLESVWMAANEDAQCDAYVVPIPYYD 173 +KK L + I+ E + +I +F PYK SMWDS S++ AA ED C+AYV+PIPYYD Sbjct: 78 IKKALDVFFQQIQEENETYRI--LFLPYKYSMWDSFASIFEAAKEDENCEAYVMPIPYYD 135 Query: 174 RKPDGSFGEFHYEGGDLPDYVPVTHYESYDISIRRPDVIYIHNPYDIYNTVTSVDPRFYS 233 + +G+ E H E PD V + ++ + PDVI+IHNPYD N VTS+ P++Y+ Sbjct: 136 KDQEGNLTEMHDESESYPDDVGIISWQDNQVDEIDPDVIFIHNPYDGNNRVTSIHPKYYT 195 Query: 234 HELKKYTDTLVYIPYYSTSGGMSEGQKSC-SAYYHADYIITQAEKYRGFFDSSFS----- 287 ++L ++Y+PYY + E + A ++ADY+I Q+E Y+ F+ S Sbjct: 196 NKLVCKDRVVIYVPYYVSYTEDKEVMVTMGGAEFYADYVIMQSEWYKKQFEQILSDYKKS 255 Query: 288 --------------KKLLPLGSPKFDRVVRICNNPPEPPAAWKAKM 319 K + LG+PK+D++ + + W+ K+ Sbjct: 256 DDDLNDLIAFYDNGNKFVVLGNPKYDKIRSLAKSEYPLRDDWEEKL 301 >C2KU50.1 C2KU50_9FIRM Possible LPS biosynthesis protein Length = 663 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 44/305 (14%) Query: 25 KHQQE-----QIQKLVTTLYEATDEINRQFSKNNIPTVINLLRDCQDAAIHMGEFIENFE 79 KH++E I + + L + +I F + P + L+ Q+ AI G IE Sbjct: 313 KHEKEPNFRDMILETWSYLEQKNKKIFENFMAGDFPLCLQLIGQMQEEAIVFGNAIEAKY 372 Query: 80 GEDTRTVELLTEYHTSLY-------------NIAMEIETIHVSFIKQLKKELRMIENSIR 126 GE + TV L +Y +L+ A E + F L K+L +NSI+ Sbjct: 373 GEGSETVSYLEKYCEALFISHQALVQALPLQEKAKEKKGPAGDFPAALWKDL---QNSIQ 429 Query: 127 NE---LKPKKIE--------VVFFPYKASMWDSLESVWMAANEDAQCDAYVVPIPYYDRK 175 LK K+ V+F P + S ++++ A ++ + ++PIPYYDR Sbjct: 430 KPGSYLKKVKLSIEKEFKRVVLFLPSRLEQLKSFQALYEALSQMEDVECKIMPIPYYDRL 489 Query: 176 PDGSFGEFHYEGGDLPDYVPVTHYESYDISIRRPDVIYIHNPYDIYNTVTSVDPRFYSHE 235 G + HYEG + Y P+ Y++YD + RPD + +H PYD YN V SVDP FYS Sbjct: 490 GTGELSDMHYEGEEFKKYYPIIDYKNYDFAKERPDCVVLHTPYDEYNQVISVDPFFYSRN 549 Query: 236 LKKYTDTLVYIPYYST------------SGGMSEGQKSCSAYYHADYIITQAEKYRGFFD 283 +KKYT+ LVYIP + T + G E + +H+D+ I Q+E + + Sbjct: 550 IKKYTNKLVYIPSFVTDEIDPKNEEDGKAFGNMEFYVTVPGLFHSDFTIVQSESMKKAYL 609 Query: 284 SSFSK 288 + S+ Sbjct: 610 AKISQ 614 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,195,752,069 Number of extensions: 95371681 Number of successful extensions: 213408 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 213394 Number of HSP's successfully gapped: 17 Length of query: 351 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 215 Effective length of database: 1,779,438,163 Effective search space: 382579205045 Effective search space used: 382579205045 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)