BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0028.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7IK87.1 B7IK87_BACC2 Transcriptional regulator, GntR family 152 3e-35 C2XQA0.1 C2XQA0_BACCE GntR domain protein 151 5e-35 C2V882.1 C2V882_BACCE GntR domain protein 151 6e-35 C2TTY0.1 C2TTY0_BACCE GntR domain protein 151 6e-35 C2SGB0.1 C2SGB0_BACCE GntR domain protein 150 9e-35 >B7IK87.1 B7IK87_BACC2 Transcriptional regulator, GntR family Length = 226 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 120/222 (54%) Query: 36 ISNQTGLKAVQRRKLVDEVLDQLMGLIQSGQYXXXXXXXXXXXXXXXXSVGRSTVREAVK 95 ++ + V RRKLVDEVL++L I SG+Y VGRST+RE++K Sbjct: 3 MNEKKSFSKVSRRKLVDEVLERLQEKIFSGKYEVGDRLPTEPQLMEELGVGRSTLRESIK 62 Query: 96 ILVHAGFLEVRQGDGTYVKMPSIGFQSVQATLIPQNFEQVLEVRRMLEIEXXXXXXXXXX 155 ILVHAG LEVRQG GT + +I S + L N V E R ML+ E Sbjct: 63 ILVHAGILEVRQGQGTRIVSLNITQDSFEKRLQAANINHVYEARNMLDKEVAMLAAQRRS 122 Query: 156 XXXIGIMRSRLDLRNEYLDKGRYAEYVAADISFHMAVVEACHNDVFSAMYKVIADGLREM 215 + ++ L+ R L +G Y Y+ ADI FH+A+ +A N+V +Y+ LR + Sbjct: 123 DEDLLYLKGHLNKRKNALQEGNYVAYIDADIQFHLAIAKASKNEVLLDLYQSFVPALRHI 182 Query: 216 LSQLILDTRGYEDNTIYHEAIYMAIKAGDSDGAKRYTAQNLD 257 LSQ IL+T YEDN+ HE ++ AI +++ A++Y QNL+ Sbjct: 183 LSQFILNTANYEDNSDIHEKLFQAILKQNTEEARKYAVQNLE 224 >C2XQA0.1 C2XQA0_BACCE GntR domain protein Length = 226 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 119/222 (53%) Query: 36 ISNQTGLKAVQRRKLVDEVLDQLMGLIQSGQYXXXXXXXXXXXXXXXXSVGRSTVREAVK 95 I+ + V RRKLVDEVL++L I SG+Y VGRST+RE++K Sbjct: 3 INEKKSFSKVSRRKLVDEVLERLQEKIFSGEYEVGDRLPTEPQLMEELGVGRSTLRESIK 62 Query: 96 ILVHAGFLEVRQGDGTYVKMPSIGFQSVQATLIPQNFEQVLEVRRMLEIEXXXXXXXXXX 155 ILVHAG LEVRQG GT + + S + L N V E R ML+ E Sbjct: 63 ILVHAGILEVRQGQGTRIVSLNTTQDSFEKRLQAANINHVYEARNMLDKEVAMLAAQRRS 122 Query: 156 XXXIGIMRSRLDLRNEYLDKGRYAEYVAADISFHMAVVEACHNDVFSAMYKVIADGLREM 215 + ++ L+ R L +G Y Y+ ADI FH+A+ +A N+V +Y+ LR + Sbjct: 123 EEDLLYLKGHLNKRKNALQEGNYVAYIDADIQFHLAIAKASKNEVLLDLYQSFVPALRHI 182 Query: 216 LSQLILDTRGYEDNTIYHEAIYMAIKAGDSDGAKRYTAQNLD 257 LSQLIL+T YEDN+ HE ++ AI +++ A+ Y QNL+ Sbjct: 183 LSQLILNTTDYEDNSEIHEKLFQAILKQNAEEARTYAVQNLE 224 >C2V882.1 C2V882_BACCE GntR domain protein Length = 239 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 118/222 (53%) Query: 36 ISNQTGLKAVQRRKLVDEVLDQLMGLIQSGQYXXXXXXXXXXXXXXXXSVGRSTVREAVK 95 I+ + V RRKLVDEVL++L I SG+Y VGRST+RE++K Sbjct: 16 INEKKSFSKVSRRKLVDEVLERLQEKIFSGEYEVGDRLPTEPQLMEELGVGRSTLRESIK 75 Query: 96 ILVHAGFLEVRQGDGTYVKMPSIGFQSVQATLIPQNFEQVLEVRRMLEIEXXXXXXXXXX 155 ILVHAG LEVRQG GT + + S + L N V E R ML+ E Sbjct: 76 ILVHAGILEVRQGQGTRIVSLNTTQDSFEKRLQAANINHVYEARNMLDKEVAMLAAQRRS 135 Query: 156 XXXIGIMRSRLDLRNEYLDKGRYAEYVAADISFHMAVVEACHNDVFSAMYKVIADGLREM 215 + ++ LD R L +G Y Y+ ADI FH+A+ A N+V +Y+ LR + Sbjct: 136 EEDLLYLKGHLDKRRNALREGNYVAYIDADIQFHLAIATASKNEVLLDLYQSFVPALRHI 195 Query: 216 LSQLILDTRGYEDNTIYHEAIYMAIKAGDSDGAKRYTAQNLD 257 LSQLIL+T YEDN+ HE ++ AI +++ A+ Y QNL+ Sbjct: 196 LSQLILNTADYEDNSEIHEKLFQAILKQNAEEARTYVVQNLE 237 >C2TTY0.1 C2TTY0_BACCE GntR domain protein Length = 239 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 118/222 (53%) Query: 36 ISNQTGLKAVQRRKLVDEVLDQLMGLIQSGQYXXXXXXXXXXXXXXXXSVGRSTVREAVK 95 I+ + V RRKLVDEVL++L I SG+Y VGRST+RE++K Sbjct: 16 INEKKSFSKVSRRKLVDEVLERLQEKIFSGEYEVGDRLPTEPQLMEELGVGRSTLRESIK 75 Query: 96 ILVHAGFLEVRQGDGTYVKMPSIGFQSVQATLIPQNFEQVLEVRRMLEIEXXXXXXXXXX 155 ILVHAG LEVRQG GT + + S + L N V E R ML+ E Sbjct: 76 ILVHAGILEVRQGQGTRIVSLNTTQDSFEKRLQAANINHVYEARNMLDKEVAMLAAQRRS 135 Query: 156 XXXIGIMRSRLDLRNEYLDKGRYAEYVAADISFHMAVVEACHNDVFSAMYKVIADGLREM 215 + ++ LD R L +G Y Y+ ADI FH+A+ A N+V +Y+ LR + Sbjct: 136 EEDLLYLKGNLDKRRNALREGNYVAYIDADIQFHLAIATASKNEVLLDLYQSFVPALRHI 195 Query: 216 LSQLILDTRGYEDNTIYHEAIYMAIKAGDSDGAKRYTAQNLD 257 LSQLIL+T YEDN+ HE ++ AI +++ A+ Y QNL+ Sbjct: 196 LSQLILNTADYEDNSEIHEKLFQAILKQNAEEARTYVVQNLE 237 >C2SGB0.1 C2SGB0_BACCE GntR domain protein Length = 239 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 119/222 (53%) Query: 36 ISNQTGLKAVQRRKLVDEVLDQLMGLIQSGQYXXXXXXXXXXXXXXXXSVGRSTVREAVK 95 I+ + V RRKLVDEVL++L I SG+Y VGRST+RE++K Sbjct: 16 INEKKSFSKVSRRKLVDEVLERLQEKIFSGEYEVGDRLPTEPQLMEELGVGRSTLRESIK 75 Query: 96 ILVHAGFLEVRQGDGTYVKMPSIGFQSVQATLIPQNFEQVLEVRRMLEIEXXXXXXXXXX 155 ILVHAG LEVRQG GT + + S + L N V E R ML+ E Sbjct: 76 ILVHAGILEVRQGQGTRIVSLNTTQDSFEKRLQTANINHVYEARNMLDKEVAMLAAQRRS 135 Query: 156 XXXIGIMRSRLDLRNEYLDKGRYAEYVAADISFHMAVVEACHNDVFSAMYKVIADGLREM 215 + ++ L+ R L +G Y Y+ ADI FH+A+ +A N+V +Y+ LR + Sbjct: 136 EEDLLYLKGHLNKRKNALQEGNYVAYIDADIQFHLAIAKASKNEVLLDLYQSFVPALRHI 195 Query: 216 LSQLILDTRGYEDNTIYHEAIYMAIKAGDSDGAKRYTAQNLD 257 LSQLIL+T YEDN+ HE ++ AI +++ A+ Y QNL+ Sbjct: 196 LSQLILNTVNYEDNSDIHEKLFQAIFKQNAEEARTYAVQNLE 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,321,422,679 Number of extensions: 45146911 Number of successful extensions: 112454 Number of sequences better than 1.0e-05: 714 Number of HSP's gapped: 113005 Number of HSP's successfully gapped: 714 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)