BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0016.p (590 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I622.1 B8I622_CLOCE Extracellular solute-binding protein family 1 380 e-103 C2AXH9.1 C2AXH9_9MICO Carbohydrate ABC transporter substrate-bin... 372 e-101 B1S933.1 B1S933_9BIFI Putative uncharacterized protein 352 5e-95 A9KQL0.1 A9KQL0_CLOPH Putative uncharacterized protein 331 1e-88 B1S957.1 B1S957_9BIFI Putative uncharacterized protein 323 3e-86 >B8I622.1 B8I622_CLOCE Extracellular solute-binding protein family 1 Length = 588 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/532 (40%), Positives = 310/532 (58%), Gaps = 15/532 (2%) Query: 49 NTDKKEITIDVFSMLANYAGEQPGWFAKLVKDKFNIKLNIIASNLAG-GQQKVATMMASG 107 N K +T+DV++M N+ GEQ GWF K++KDKFN+KLNII++ G Q T ASG Sbjct: 45 NPYKDTVTLDVYTMTGNFQGEQIGWFGKVIKDKFNLKLNIISAQTDGNADQSFQTRSASG 104 Query: 108 DLGDLVVFGTNGKDYQDAIKAGLLLDFTKDDMLNKYGQGLLANAPEAIEANKKQFGGGTA 167 DLGD+VV+G + D++KAGLL+ + +D+L K+G ++ N AI+ ++G Sbjct: 105 DLGDIVVYGAIDTKFTDSLKAGLLMKLSDNDLLAKHGDNIVKNFSGAIKRISAKYGD--- 161 Query: 168 VYGVGFDVGTGE--GPSEGATMNYGPNLRWDLYQKLGSPEIKTLNDYLPLLKKMQELEPK 225 Y + +V PSE + + +G R+D YQ++GSP++ + +D P+LK M + P Sbjct: 162 -YAIPNNVSNESPITPSEDSDLTFGVYTRYDYYQEIGSPKLNSFDDVYPMLKAMAKKHPT 220 Query: 226 SENGRPTYGISLWSDWDGTYMTLAKVIAQFHGYNEGDGLNPAGLTLTHQNKDEWQGVLDE 285 + NG+ Y SL+ DWDG M K+IA+ +GY E G LT+ E+Q ++D Sbjct: 221 NSNGQKQYAFSLFKDWDGCMMMFGKMIAELYGYEEAPF---GGFLLTNNMATEYQSIIDP 277 Query: 286 DGYYLQGLKFYYDANQMGLLDPDSLTQKFSDVSNKIKDGQVLFSHFPWVD-NVYNTPERT 344 DGYY++ LK Y A + GLLDPDS+ Q + D++ K +GQVL+S F W+ N +N + Sbjct: 278 DGYYVKALKVYNQAYRDGLLDPDSINQTWDDITKKYANGQVLYSQFSWLGPNNFNNADNI 337 Query: 345 AEGKGFALVPFADEKVTSYGQSPYGGNRVWAIGSKAKEPERIMEFLSWLYSPEGVMEANY 404 ++G GFALVP ADEK+ S G +P G + A+G K PER M+FL+W YS EG M Sbjct: 338 SKGVGFALVPIADEKIWSNGFTPNGSTYLVALGKSCKNPERAMDFLNWYYSSEGEMIIKN 397 Query: 405 GPKGLAWDIDESGKPFVTDFGWKALPANAEPVPAEYGGGTFKDGXXXXXXXXXXXXXXXP 464 GP+GLAW I E+GKP +TDFG K +P+ A V +E+GG ++ G P Sbjct: 398 GPEGLAWRI-ENGKPTLTDFGRKCMPSIAVEVSSEFGGSDWQTGECKVGFDGLAANSINP 456 Query: 465 DTGETYDYNLWPSTLNHDPDPVTKSWREAT-GVMTAKDYFVKNNMIEVSKXXXXXXXXXX 523 +T E Y Y LW STL+ + + K+W A ++ KD+ +KNN + VS Sbjct: 457 NTKEPYYYKLWSSTLSSNTSTLQKNWSAAMDDALSTKDWLMKNNHVSVSP--GTDYVGPT 514 Query: 524 XXAQLQQXXXXXXXXXXEYSWKMVFAKNDAEYNKLKEEMITKSKGLGYDEAV 575 + +Q +YSWKMV+AKND+E+N L ++M K KG GYD V Sbjct: 515 LPSDIQSTQDVVKMDIRDYSWKMVYAKNDSEFNSLLKQMTEKVKGEGYDTVV 566 >C2AXH9.1 C2AXH9_9MICO Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 587 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 222/557 (39%), Positives = 313/557 (56%), Gaps = 35/557 (6%) Query: 41 PVASDNNDNTDKKEITIDVFSMLANYAGEQPGWFAKLVKDKFNIKLNIIASNLAGGQQKV 100 PVA D + +T ITIDVF LANY G Q GWF KLVKDKFN++LNIIA N+AGG + Sbjct: 37 PVALDQDWST-SDPITIDVFDGLANYQGIQSGWFGKLVKDKFNMELNIIAPNVAGGGDTL 95 Query: 101 -ATMMASGDLGDLVVFGTNGKDYQDAIKAGLLLDFTKDDMLNKYGQGLLANAPEAIEANK 159 T +A GDLGDL++ G+ + I GLLLD +K YG + + + A + Sbjct: 96 YNTRVAGGDLGDLIIT-DKGEKMDELIAGGLLLDVSK-----YYGS--MESVSQYDAAVQ 147 Query: 160 KQFGGGTAVYGVGFDVGT--GEGPSEGATMNYGPNLRWDLYQKLGSPEIKTLNDYLPLLK 217 + G +YG+ V T PSEG +G LRWD Y G PEI TL D LP+LK Sbjct: 148 RLNDGKDGIYGLPTQVSTLPPTAPSEGIDPTFGAYLRWDYYADAGYPEIGTLEDLLPILK 207 Query: 218 KMQELEPKSENGRPTYGISLWSDWDGTYMTLAKVIAQFHGYNEGDGLNPAGLTLTHQNKD 277 +MQ+ P ++NG PTYG+SL+ DWDG M + K A +G++E G L + Sbjct: 208 EMQDAHPTADNGGPTYGLSLFKDWDGNMMVMGKQPACLYGFDE------MGFVLAKADGS 261 Query: 278 EWQGVLDEDGYYLQGLKFYYDANQMGLLDPDSLTQKFSDVSNKIKDGQVLFSHFPWV-DN 336 E+Q ++D D Y++ L+ Y+DANQ+G+LDP+S TQ + + K ++GQVL S +PW+ + Sbjct: 262 EYQSIIDSDSAYVRSLQLYFDANQLGILDPESTTQNYDTMFAKYQNGQVLLSWWPWLGQS 321 Query: 337 VYNTPERTAEGKGFALVPFADEKVTSYGQSPYGGNRVWAIGSKAKEPERIMEFLSWLYSP 396 YNT GKGF +VP AD+++ SYG YGG +V AIGS A++P+RI F+ WLYS Sbjct: 322 AYNTTANLEAGKGFEMVPLADQEIFSYGAEVYGGKQVLAIGSHAEDPDRIAAFVDWLYSR 381 Query: 397 EGVMEAN------YGPKGLAWDIDESGKPFVTDFGWKALPANAEPVPAEYGGGTFKDGXX 450 EGV+ + GP+GL W++ +P +TDFG A+ VPAE+GGG + DG Sbjct: 382 EGVLASGNQTMGAAGPEGLTWEL-VGDQPELTDFGKAAILGGDGDVPAEWGGGKYADGVS 440 Query: 451 XXXXXXXXXXXXXPDTGETYDYNLWPSTLNHDPDPVTKSWR----EATGVMTAKDYFVKN 506 P TG Y+Y WPS +T W +AT M DY VKN Sbjct: 441 ALNVTTVLPIDTDPKTGYEYNYKYWPSVQEITGTALTDDWSAHMDDATSTM---DYLVKN 497 Query: 507 NMIEVSKXXXXXXXXXXXXAQLQQXXXXXXXXXXEYSWKMVFAKNDAEYNKLKEEMITKS 566 + + V+ ++++ EYSWKMV+AK+ AE++ L ++ + + Sbjct: 498 DQVLVAP--GSGFTTPADSSEIETIRNQVKASVVEYSWKMVYAKDQAEFDSLLAQLQSTA 555 Query: 567 KGLGYDEAVAFEVGNAE 583 +GLGY + + ++ NAE Sbjct: 556 EGLGYAKVLEVDMANAE 572 >B1S933.1 B1S933_9BIFI Putative uncharacterized protein Length = 595 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 207/556 (37%), Positives = 313/556 (56%), Gaps = 32/556 (5%) Query: 42 VASDNNDNTDKKEITIDVFSMLANYAGEQPGWFAKLVKDKFNIKLNIIASNLAGGQQKV- 100 A++ +DN+ +T++VF LANY GEQ GWFAK++KDKFNIKLNI+A N+AGG + Sbjct: 31 TAAEKDDNS---LMTVEVFDGLANYQGEQKGWFAKIIKDKFNIKLNIVAPNVAGGGSTLF 87 Query: 101 ATMMASGDLGDLVVFGTNGKDYQDAIKAGLLLDFTKDDMLNKYGQGL--LANAPEAIEAN 158 T A+G+LGD+V++G + +K+GL+ D T Y +G+ + +A + Sbjct: 88 DTRAAAGNLGDIVIYGYDTGKGAKLVKSGLIEDMTP------YLKGMKYINKYKDATDYV 141 Query: 159 KKQFGGGTAVYGVG---FDVGTGEGPSEGATMNYGPNLRWDLYQKLGSPEIKTLNDYLPL 215 +Q G + V+GV D T + PSEG +GP LRWDLY+++G PEI TL D +P+ Sbjct: 142 NEQIGQKSGVWGVPASVVDTLTPDQPSEGLEPTFGPYLRWDLYKEIGYPEIDTLEDLIPV 201 Query: 216 LKKMQELEPKSENGRPTYGISLWSDWDGTYMTLAKVIAQFHGYNEGDGLNPAGLTLTHQN 275 LK+MQ+ + Y +SL+ DWDG M AK F+G++E G L + Sbjct: 202 LKQMQDKAREESGSDDIYAMSLFKDWDGNMMNNAKQPTCFYGFDE------VGFVLAKGD 255 Query: 276 KDEWQGVLDEDGYYLQGLKFYYDANQMGLLDPDSLTQKFSDVSNKIKDGQVLFSHFPWVD 335 +++ + E G Y + +KF+ AN+ G++DP+S TQ + +++K K+G+VLFS +PW+ Sbjct: 256 GSDFESITKEGGIYERVIKFFNAANRAGIVDPESTTQNYDTMNSKYKNGKVLFSFWPWLG 315 Query: 336 N-VYNTPERTAEGKGFALVPFADEKVTSYGQSPYGGNRVWAIGSKAKEPERIMEFLSWLY 394 +NT AEGKGF L P D K+ SYG +P G + A+GSKAK +R+++F++WLY Sbjct: 316 QAAHNTNANKAEGKGFMLAPLKDMKIFSYGAAPRGDKTMIALGSKAKNKQRLVKFINWLY 375 Query: 395 SPEGVMEA------NYGPKGLAWDIDESGKPFVTDFGWKALPANAEPVPAEYGGGTFKDG 448 SPEGV + + GPKGL W+I + GKP +T+FG L ++ VP E+GGG++ DG Sbjct: 376 SPEGVYASSNQTGGSAGPKGLNWEIKD-GKPVLTEFGSAVLSGESKNVPEEWGGGSYSDG 434 Query: 449 XXXXXXXXXXXXXXXPDTGETYDYNLWPSTLNH-DPDPVTKSWREATGVMTAKDYFVKNN 507 PDTG TY+ +WPS + + +P+ K W+E G T +Y N+ Sbjct: 435 ISALNFTTVTVNDIDPDTGYTYNPVMWPSEIEKANQNPLNKDWQEHMGASTTMEYLENND 494 Query: 508 MIEVSKXXXXXXXXXXXXAQLQQXXXXXXXXXXEYSWKMVFAKNDAEYNKLKEEMITKSK 567 M+ V +Q+ SWK FA +++E K+ EMI Sbjct: 495 MLLVG--AGSSYVQPEENSQISTLRGSIKTEIVNSSWKASFASSESECEKIFSEMIKTVN 552 Query: 568 GLGYDEAVAFEVGNAE 583 GL D + ++ NA+ Sbjct: 553 GLDIDSVLKVDMKNAK 568 >A9KQL0.1 A9KQL0_CLOPH Putative uncharacterized protein Length = 595 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 203/546 (37%), Positives = 285/546 (52%), Gaps = 26/546 (4%) Query: 43 ASDNNDNTDKKEITIDVFSMLANYAGEQPGWFAKLVKDKFNIKLNIIASNLAGGQQKVAT 102 A+D +D K +T++V+S LANY G Q GWFA ++ +KFN+KLNII G T Sbjct: 61 AADLSDIIPKDTLTLNVYSQLANYEGIQIGWFADVILEKFNVKLNIINE----GDGVFPT 116 Query: 103 MMASGDLGDLVVFGTNGKDYQDAIKAGLLLDFTKDDMLNKYGQGLLANAPEAIEANKKQF 162 M SGDLGDLVVFG +G Y+ A+ G+L D+ +D++ YG + N A+E NKK Sbjct: 117 RMESGDLGDLVVFGNDGDQYKQAVDKGMLFDWEDEDLVKNYGPSIYKNMSAALEKNKKVS 176 Query: 163 GGGTAVYGVGFDVGTGEGPSEGATMNYGPNLRWDLYQKLGSPEIKTLNDYLPLLKKMQEL 222 GG T YG G++V G +Y P+LRWDLYQ++GSP I TL DY+ +LKKM+E+ Sbjct: 177 GGNT--YGFGYNVALSGG--NFGDFDYHPDLRWDLYQQIGSPAINTLEDYVDVLKKMKEV 232 Query: 223 EPKSENGRPTYGISLWSDWDGTYMTLAKVIA-QFHGYNEGDGLNPAGLTLTHQNKDE--W 279 P S++G+ TYG SL+ DWDG K A F G +E N D+ + Sbjct: 233 CPTSDSGKETYGASLFKDWDGNMAMFVKATATNFFGVDE--------FHFGFYNADDGSF 284 Query: 280 QGVLDEDGYYLQGLKFYYDANQMGLLDPDSLTQKFSDVSNKIKDGQVLFSHFPWVDN-VY 338 Q L ++GYYL+ LKFY Q GLLDPDS+TQ +S +DG F F W+ + Sbjct: 285 QDCLADNGYYLRCLKFYNTLFQNGLLDPDSMTQGYSGCMEDYQDGGAFFCIFGWMAAPQF 344 Query: 339 NTPERTAEGKGFALVPFADEKVTSYGQSPYGGNRVWAIGSKAKEPERIMEFLSWLYSPEG 398 NT E AEGK V D+ YG + GGNR+W+IG+ K PE M L+WL +PEG Sbjct: 345 NTDEHIAEGKKMLPVAAKDQDTLVYGLNTNGGNRIWSIGANTKYPELCMAILNWLCTPEG 404 Query: 399 VMEANYGPKGLAWDIDESGKPFVTDFGWKALPANAEPVPAEYGGGTFKDGXXXXXXXX-- 456 + + YGPK + W+ G +T+FG + +PA Y G ++DG Sbjct: 405 FITSEYGPKDICWEYLPDGSVDLTEFGLQCRINQKTTMPAPY-TGYWEDGCQQINNLTWD 463 Query: 457 XXXXXXXPDTGETYDYNLWPSTLNHDPDPVTKSWREATGVMTAKDYFVKNNMIEVSKXXX 516 G+TY+Y WP LN V +SWR+AT + ++Y K N S Sbjct: 464 RNTEILGGVNGQTYNYLYWPRYLNLPVSDVDQSWRDATKSDSIREYLSKFNY---SVAKA 520 Query: 517 XXXXXXXXXAQLQQXXXXXXXXXXEYSWKMVFAKNDAEYNKLKEEMITKSKGLGYDEAVA 576 +L SWK ++AK DAE++++ +M T++ G+ + Sbjct: 521 HTYSDSVRSDELDTIWNQVKECIKNGSWKAIYAKTDAEFDEIVNQMKTEAYNYGFQQCAD 580 Query: 577 FEVGNA 582 + A Sbjct: 581 WSANEA 586 >B1S957.1 B1S957_9BIFI Putative uncharacterized protein Length = 567 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 195/555 (35%), Positives = 292/555 (52%), Gaps = 26/555 (4%) Query: 42 VASDNNDNTDKKEITIDVFSMLANYAGEQPGWFAKLVKDKFNIKLNIIASNLAGGQQKV- 100 ASD +DN+ +T++VF LANY GEQ GWFAK++KDKFNIKLNI+A N+AGG + Sbjct: 12 TASDADDNS---LMTVEVFDQLANYQGEQKGWFAKVIKDKFNIKLNIVAPNVAGGGNTLF 68 Query: 101 ATMMASGDLGDLVVFGTNGKDYQDAIKAGLLLDFTKDDMLNKYGQGLLANAPEAIEANKK 160 T A+G+LGD+V+ G+ + +K+ L+ D + KY L AI+ K Sbjct: 69 DTRAAAGNLGDIVIIGSGSGQAEKVVKSKLVTDLSSYIKNTKY----LKTYQGAIDQLTK 124 Query: 161 QFGGGTAVYGVGFDVGT--GEGPSEGATMNYGPNLRWDLYQKLGSPEIKTLNDYLPLLKK 218 + ++G+ V + SEG +GP +RWD Y+++G P++ TL D LP+LK+ Sbjct: 125 DANQESGMWGIPTSVSSLSPTESSEGVEPTFGPFVRWDYYKEIGYPKVATLEDLLPVLKQ 184 Query: 219 MQELEPKSENGRPTYGISLWSDWDGTYMTLAKVIAQFHGYNEGDGLNPAGLTLTHQNKDE 278 MQ+ + Y +SL+ DWD M + F+GY EG G +++ + + Sbjct: 185 MQDKAREETGSDDVYALSLFKDWDDQAMQNGFQLPAFYGYAEG-----TGYVMSNADGTD 239 Query: 279 WQGVLDEDGYYLQGLKFYYDANQMGLLDPDSLTQKFSDVSNKIKDGQVLFSHFPWVDN-V 337 Q ++DE+G Y++ LKFY A QMGL+DP+S TQ + + +K K+G++LFS +PW+ Sbjct: 240 AQSLIDENGVYVRALKFYNKAEQMGLVDPESTTQNYDTMYSKYKEGKILFSFWPWLGQAA 299 Query: 338 YNTPERTAEGKGFALVPFADEKVTSYGQSPYGGNRVWAIGSKAKEPERIMEFLSWLYSPE 397 YNT +GKGF ++ D K+ S G P G +G KAK ER+++F+ WLYSPE Sbjct: 300 YNTDAHKKDGKGFMMLSIDDMKIASKGAQPNGTTTFIGVGEKAKNKERLVKFIDWLYSPE 359 Query: 398 GVMEANY------GPKGLAWDIDESGKPFVTDFGWKALPANAEPVPAEYGGGTFKDGXXX 451 G+ A G KGL WDI + GKP +TDFG KA+ + VP EYGGG + DG Sbjct: 360 GIQAAGSQTNGAAGLKGLTWDIKD-GKPVLTDFGVKAMGGESVNVPEEYGGGGYSDGASQ 418 Query: 452 XXXXXXXXXXXXPDTGETYDYNLWPSTLNHDPDPVTKSWREAT-GVMTAKDYFVKNNMIE 510 P T Y+Y +W S L + K W+E G T +Y ++ + Sbjct: 419 LNVSTVLNKDIDPRTNAPYNYQMWDSELAKRDTALDKDWQEHMGGARTTMEYLEQSGKLA 478 Query: 511 VSKXXXXXXXXXXXXAQLQQXXXXXXXXXXEYSWKMVFAKNDAEYNKLKEEMITKSKGLG 570 V + + W+ VF+K+D E+N + +M + GLG Sbjct: 479 V--IPGASYTTPDEDSVISTTRGQLKTAVVNACWQAVFSKSDDEFNSIWSKMQKEVDGLG 536 Query: 571 YDEAVAFEVGNAEKM 585 Y + ++ N + M Sbjct: 537 YKKVYDVDMKNTKDM 551 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,701,223,884 Number of extensions: 169313960 Number of successful extensions: 271234 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 271163 Number of HSP's successfully gapped: 39 Length of query: 590 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 448 Effective length of database: 1,722,912,073 Effective search space: 771864608704 Effective search space used: 771864608704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)