BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0015.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I621.1 B8I621_CLOCE Binding-protein-dependent transport system... 357 9e-97 B1S932.1 B1S932_9BIFI Putative uncharacterized protein 333 9e-90 C2AXC9.1 C2AXC9_9MICO Carbohydrate ABC transporter membrane prot... 322 2e-86 A9KQK9.1 A9KQK9_CLOPH Binding-protein-dependent transport system... 288 3e-76 B5YAV3.1 B5YAV3_DICT6 Transmembrane lipoprotein 186 2e-45 >B8I621.1 B8I621_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 307 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 173/303 (57%), Positives = 227/303 (74%), Gaps = 8/303 (2%) Query: 1 MPAKEKFTL----FHFINYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVH 56 + K++++L F I Y VF ++T+ C++PFY+L INT++ ND+SS+ V+ P+ +H Sbjct: 5 LEKKQRYSLGDILFFIIIYVVFTVLTIACIYPFYFLIINTLTANDISSKAAVLLLPQKIH 64 Query: 57 FTNYMDVFKIPGLGQAALMSVGRTVIGTLLTVAASAFLGYLFTK-QMWGRKFWYRFLVIT 115 F NY+ + + GL A ++SV RT+IG LTV ASAFLGYLFTK +MWGRKFWYRF+++T Sbjct: 65 FDNYLKILNLNGLTDALIVSVARTIIGAALTVFASAFLGYLFTKKEMWGRKFWYRFVIVT 124 Query: 116 MYFNAGLIPWYLTMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGA 175 MYFNAGLIPWY+TMLNLGL NNF AY+LP IV PF IILVKT++E+TP ALQE+AQIDGA Sbjct: 125 MYFNAGLIPWYITMLNLGLRNNFLAYILPAIVAPFNIILVKTYIENTPQALQEAAQIDGA 184 Query: 176 GYFKVFTSXXXXXXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEAT 235 GYF +F F++V QWNSFTDTL L+TD L+TLQFILYRY+N+A+ Sbjct: 185 GYFTIFIKVVWPLCVPILATVTIFAAVGQWNSFTDTLLLMTDSHLYTLQFILYRYLNQAS 244 Query: 236 SIAQLMKQSTGAMDLDLANMA---TPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGA 292 S+A +M+ S + ++++A T S+R TVS+VV+LPIL VYPFFQRFFV GI+IGA Sbjct: 245 SLASIMRNSGAGIGQQVSSLAGSQTAQSVRMTVSVVVILPILFVYPFFQRFFVGGIIIGA 304 Query: 293 VKG 295 VKG Sbjct: 305 VKG 307 >B1S932.1 B1S932_9BIFI Putative uncharacterized protein Length = 310 Score = 333 bits (855), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 170/296 (57%), Positives = 221/296 (74%), Gaps = 6/296 (2%) Query: 3 AKEKFTLFHFINYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMD 62 +E + +F+ + + VFA I CV+PFYYL IN+IS+N+ S+ G V ++P+G+H+ NY Sbjct: 18 GEEVYNVFNILFFLVFAFI---CVYPFYYLIINSISSNNASAAGQVNWWPQGIHWENYKQ 74 Query: 63 VFKIPGLGQAALMSVGRTVIGTLLTVAASAFLGYLFTKQ-MWGRKFWYRFLVITMYFNAG 121 VF + GL +A +SV RTVIGT+LTV ASAFLG++FT++ MW RKFWYRF+VITMYFNAG Sbjct: 75 VFALSGLTTSAFISVARTVIGTVLTVIASAFLGFMFTQEKMWHRKFWYRFIVITMYFNAG 134 Query: 122 LIPWYLTMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVF 181 LIP ++TM NL LTNNF Y+LP IVQPF IILVKTFVES P +LQE+A++DGAG +F Sbjct: 135 LIPMFITMKNLHLTNNFWVYILPAIVQPFNIILVKTFVESIPASLQEAAEMDGAGTLTIF 194 Query: 182 TSXXXXXXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQLM 241 FS+V QWNSF DTL +TD KL++LQ++LY Y+N+A ++A + Sbjct: 195 WKIVLPMMAPILATVGIFSAVGQWNSFQDTLIYMTDSKLYSLQYVLYTYINQANALAASV 254 Query: 242 KQSTG-AMDL-DLANMATPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVKG 295 + S G AM++ LA TPTSIR TVS++VVLPIL VYPFFQRFFVKG+M+GAVKG Sbjct: 255 RASAGSAMNVAALATQQTPTSIRMTVSVIVVLPILFVYPFFQRFFVKGMMLGAVKG 310 >C2AXC9.1 C2AXC9_9MICO Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 305 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/285 (54%), Positives = 209/285 (73%), Gaps = 3/285 (1%) Query: 14 NYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMDVFKIPGLGQAA 73 NY FAL L+C +PF+YL +N++S NDLS+ G + +P+G+H +NY + ++ GL AA Sbjct: 21 NYLWFALFALLCAYPFWYLVVNSVSANDLSAAGDIRLWPRGLHLSNYSQILQLNGLSTAA 80 Query: 74 LMSVGRTVIGTLLTVAASAFLGYLFTKQ-MWGRKFWYRFLVITMYFNAGLIPWYLTMLNL 132 ++SV RTVIGT TV ASAFLG++FT++ MW R WYR +VITMYFNAGLIP Y+TM L Sbjct: 81 IVSVARTVIGTAATVLASAFLGFMFTQERMWKRSLWYRLVVITMYFNAGLIPVYVTMKTL 140 Query: 133 GLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVFTSXXXXXXXXX 192 GLTN+F Y+LP IVQPF +ILVKT++ES P +LQE+A++DGA ++F S Sbjct: 141 GLTNSFWVYILPAIVQPFNVILVKTYIESLPRSLQEAAEVDGASTLRIFFSIILPNTTPI 200 Query: 193 XXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQLMKQSTGAMDL-- 250 FS+V QWNSF DTL +TDQKL++LQ++LY ++N+A+S+AQ + + G + + Sbjct: 201 LATVAIFSAVAQWNSFQDTLLYITDQKLYSLQYLLYMFINQASSLAQAAQNAQGNLGIIA 260 Query: 251 DLANMATPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVKG 295 A TPTSIR TV+++VVLPI+ VYP FQR+FVKGIM+GAVKG Sbjct: 261 SAATSQTPTSIRMTVAVIVVLPIVFVYPLFQRYFVKGIMLGAVKG 305 >A9KQK9.1 A9KQK9_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 330 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/293 (49%), Positives = 194/293 (66%), Gaps = 3/293 (1%) Query: 6 KFTLFHFINYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMDVFK 65 K +F IN++ F + T C+FPFYY+FINT+S+NDL +G V F P+G H NY+ + Sbjct: 38 KDLIFEIINHSFFLIFTFACIFPFYYIFINTVSDNDLVRKGAVNFIPQGFHIKNYLALAN 97 Query: 66 IPGLGQAALMSVGRTVIGTLLTVAASAFLGYLFTK-QMWGRKFWYRFLVITMYFNAGLIP 124 + L + +++ RT+IGT+L V AS F+GYL TK +MWGRK WYRF+V+TMYFNAGLIP Sbjct: 98 VNDLITSLTVTLSRTIIGTILMVVASGFVGYLVTKNEMWGRKIWYRFIVVTMYFNAGLIP 157 Query: 125 WYLTMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVFTSX 184 WY+ M LGLT+NF AY++P IV P+ IILVKT++ES P L+ESAQIDGA Y VF Sbjct: 158 WYINMSMLGLTDNFLAYIIPGIVAPYNIILVKTYIESIPAELEESAQIDGASYMTVFRKI 217 Query: 185 XXXXXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQ-KLFTLQFILYRYMNEATSIA-QLMK 242 F +V WNSF D+L L+ + +L TLQ LY Y+N AT++ + Sbjct: 218 IWPLSKPILATIAIFGAVGNWNSFMDSLILMPNAPQLHTLQHKLYSYLNAATNLKGVMSS 277 Query: 243 QSTGAMDLDLANMATPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVKG 295 L N+ +I+ T+SMV ++PILLVYPF QR+F KGIM+GAVKG Sbjct: 278 GGGSVSGSALNNILNAKTIKYTISMVTIIPILLVYPFMQRYFEKGIMLGAVKG 330 >B5YAV3.1 B5YAV3_DICT6 Transmembrane lipoprotein Length = 296 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 168/288 (58%), Gaps = 3/288 (1%) Query: 9 LFHFINYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMDVFKIPG 68 +F INY++ L+ +I ++PF Y+ ++++ + +G + +P+ NY ++F P Sbjct: 9 IFDVINYSLMILLVVITLYPFLYVLAVSLNDPFDTIKGGITIFPRIFTLDNYKEIFNYPS 68 Query: 69 LGQAALMSVGRTVIGTLLTVAASAFLGYLFT-KQMWGRKFWYRFLVITMYFNAGLIPWYL 127 +G+AAL+S RTVIGT+ V ++A + Y+ + K + RK +ITMY GL+P YL Sbjct: 69 IGRAALISTLRTVIGTITGVFSTAIVAYVLSRKDFFARKLVTTLFIITMYVGGGLVPEYL 128 Query: 128 TMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVFTSXXXX 187 + LGL NNF Y+LP ++ PF +I+V+ ++E+ P LQESA IDGA F +F Sbjct: 129 LIRGLGLMNNFLVYILPGLINPFNLIVVRAYIETLPSELQESAMIDGANDFVIFLKVILP 188 Query: 188 XXXXXXXXXXXFSSVTQWNSFTDT-LFLVTDQKLFTLQFILYRYMNEATSIAQLMKQSTG 246 F +V WNS+ DT L+ ++ L TLQ+ L + + A + + + + Sbjct: 189 LCIPVLATIALFIAVGHWNSWFDTYLYCGGNKNLTTLQYELQKILANAAASSTTIDYYSN 248 Query: 247 AMDLDLANMATPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVK 294 +D TP S+R ++++ LPI+LVYPF Q++F+KG+ +GA+K Sbjct: 249 -LDPTRTMRVTPQSLRMAMTIITTLPIVLVYPFLQKYFIKGMTLGAIK 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,499,761,761 Number of extensions: 55078863 Number of successful extensions: 243483 Number of sequences better than 1.0e-05: 3845 Number of HSP's gapped: 238877 Number of HSP's successfully gapped: 3850 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)