BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0014.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I620.1 B8I620_CLOCE Binding-protein-dependent transport system... 375 e-102 B1S931.1 B1S931_9BIFI Putative uncharacterized protein 344 7e-93 A9KQK8.1 A9KQK8_CLOPH Binding-protein-dependent transport system... 318 4e-85 C2AXD0.1 C2AXD0_9MICO Carbohydrate ABC transporter membrane prot... 298 5e-79 B3KDQ7.1 B3KDQ7_9BACI Binding-protein-dependent transport system... 219 2e-55 >B8I620.1 B8I620_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/313 (58%), Positives = 231/313 (73%), Gaps = 3/313 (0%) Query: 9 SLVNASTPKHLRNN---DKYRLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSAS 65 S N++T L+ N D+++LF MALPFL+L F+FSYLPLYGWIY+ +DYRP L Sbjct: 3 SPANSTTCVKLKKNKHRDRFKLFFMALPFLILCFIFSYLPLYGWIYSLFDYRPPFKLYQC 62 Query: 66 EFMGLDWFTSMISNEIQRQEVLRVLRNTFAISSLNIATSVLPVIFAVFLVELRSTRFKKI 125 +F+GL W TS+I+N R + VLRNTFAIS LN+ TSVLP+ FAVFL E++ FK+ Sbjct: 63 DFVGLKWITSIITNPAYRNAIGDVLRNTFAISGLNLLTSVLPLAFAVFLNEVKRGWFKRS 122 Query: 126 VQTLTTLPNFISWVLVYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTL 185 VQ LTTLPNFISWVLVYS AF+ FS IS+P+N LASD+HTW+AMTL Sbjct: 123 VQILTTLPNFISWVLVYSVAFVFFSTGDGVVNKILINMDIISSPINFLASDDHTWLAMTL 182 Query: 186 WSIWKGLGWGAIMYIAAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSI 245 WS+WK LGW AIMY+AAI GIDQE+YEAA+VDGAGRFR+MW++T+P ++PTFFVLL+LS+ Sbjct: 183 WSLWKTLGWSAIMYLAAIAGIDQELYEAAKVDGAGRFRMMWNITIPSLLPTFFVLLMLSV 242 Query: 246 GNFINNGMEQFYVFQNAMNTNHIEVLDLYVYNIGMTNSNFGFATAXXXXXXXXXXXXXXX 305 NF+NNG++Q+YVFQNAMN HI+VLDLYVYNIG+ + NF ATA Sbjct: 243 ANFLNNGLDQYYVFQNAMNKAHIQVLDLYVYNIGVGSMNFPLATAVSMLKSIVSIVLLFT 302 Query: 306 ANTMSKVIRGDSI 318 N +SK++RG++I Sbjct: 303 VNGVSKLLRGETI 315 >B1S931.1 B1S931_9BIFI Putative uncharacterized protein Length = 345 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 168/313 (53%), Positives = 217/313 (69%), Gaps = 1/313 (0%) Query: 6 ASKSLVNASTPKHLRNNDKYRLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSAS 65 A + S + R ++LFL+ PFL+L+ LFSYLPL+GW+YAFYDY+P IPLS S Sbjct: 33 AVRKAEKLSQQQSDRKRHGFKLFLLISPFLILSVLFSYLPLFGWVYAFYDYQPPIPLSQS 92 Query: 66 EFMGLDWFTSMISNEIQRQEVLRVLRNTFAISSLNIATSVLPVIFAVFLVELRSTRFKKI 125 EF+GL WF M+ N Q Q + +VL NTFA+S LNI TS P+ FA+ L E+R+ F+ + Sbjct: 93 EFVGLQWFKMMVQNPAQLQTIGQVLINTFAMSGLNILTSFFPLFFAIALNEIRAKWFRNL 152 Query: 126 VQTLTTLPNFISWVLVYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTL 185 +QTLTTLPNFISWVLVY+ AF +FS IS P+ L SD+HTW+ M L Sbjct: 153 IQTLTTLPNFISWVLVYAVAFAMFSTTGMLNEMLQNLHI-ISEPIKFLDSDSHTWLKMLL 211 Query: 186 WSIWKGLGWGAIMYIAAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSI 245 W +WKGLGWG+IMY+A I GID E+YEAA+VDGA RF+ + HVT+P ++PT+FVLL+LSI Sbjct: 212 WGLWKGLGWGSIMYLAGIAGIDPELYEAAQVDGANRFQQIVHVTIPQLLPTYFVLLMLSI 271 Query: 246 GNFINNGMEQFYVFQNAMNTNHIEVLDLYVYNIGMTNSNFGFATAXXXXXXXXXXXXXXX 305 NF+NNGM+Q++VFQNA NT HI+VLDLYVYN+GM N++ +ATA Sbjct: 272 SNFLNNGMDQYFVFQNAFNTKHIQVLDLYVYNVGMGNNSLSYATAISMLKSLVSVGLLIV 331 Query: 306 ANTMSKVIRGDSI 318 N +SK RG SI Sbjct: 332 VNWLSKRTRGVSI 344 >A9KQK8.1 A9KQK8_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 478 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 152/308 (49%), Positives = 208/308 (67%), Gaps = 6/308 (1%) Query: 16 PKHLRNND-----KYRLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSASEFMGL 70 PK +N KY+LFL+ +PFL+L F+FSYLPL+GW YAF+DY+ G LS F+G Sbjct: 171 PKPDKNEKYEMETKYKLFLLIMPFLILCFVFSYLPLFGWRYAFFDYKAGDSLSLDNFVGF 230 Query: 71 DWFTSMISNEIQRQEVLRVLRNTFAISSLNIATSVLPVIFAVFLVELRSTRFKKIVQTLT 130 WFT + N+ R +++RVLRNT A+S L +ATS + FA+FL E++S R ++ +QT+T Sbjct: 231 KWFTYLFQNKSTRGDIVRVLRNTLAMSGLGLATSWCAMAFAIFLCEIKSLRLRRFIQTIT 290 Query: 131 TLPNFISWVLVYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTLWSIWK 190 T+PNFISWVLV++ AF +FS I +N L S+NH W+ M W +WK Sbjct: 291 TIPNFISWVLVFAVAFSIFSTDGFLSSILIKYGV-IDNGVNYLMSNNHMWLKMLAWGMWK 349 Query: 191 GLGWGAIMYIAAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSIGNFIN 250 GLGW AI+YIAAI+GIDQ+++EAA VDGAGRF+ MWH+TVP ++PTF VLL+++I ++ Sbjct: 350 GLGWSAIIYIAAISGIDQQLFEAATVDGAGRFQRMWHITVPSLLPTFLVLLVMAIAGILS 409 Query: 251 NGMEQFYVFQNAMNTNHIEVLDLYVYNIGMTNSNFGFATAXXXXXXXXXXXXXXXANTMS 310 NGM+Q+ VFQNA NT+ + VLDLYVY +G+ N AT AN +S Sbjct: 410 NGMDQYLVFQNAYNTDTVTVLDLYVYKLGINNGKIPLATVVGMAKSIVSIILLFGANKVS 469 Query: 311 KVIRGDSI 318 K+IRG+SI Sbjct: 470 KIIRGNSI 477 >C2AXD0.1 C2AXD0_9MICO Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 292 Score = 298 bits (762), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 145/278 (52%), Positives = 189/278 (67%), Gaps = 1/278 (0%) Query: 41 FSYLPLYGWIYAFYDYRPGIPLSASEFMGLDWFTSMISNEIQRQEVLRVLRNTFAISSLN 100 FSYLPL GW A +DY+P + + SEF+GL WF ++S+ Q +++ +V+ NT A+S L Sbjct: 15 FSYLPLAGWATALFDYKPALGIGGSEFVGLQWFRMLVSSRTQLEQIGQVMANTLAMSFLG 74 Query: 101 IATSVLPVIFAVFLVELRSTRFKKIVQTLTTLPNFISWVLVYSFAFMLFSVXXXXXXXXX 160 IATS+LP+ FA+ L E+R+ F+ VQTLTTLPNFISWVLVY+ AF LFS Sbjct: 75 IATSLLPLFFAMLLNEVRAKWFRNAVQTLTTLPNFISWVLVYAIAFSLFSTSGLVNSTLA 134 Query: 161 XXXXWISTPMNILASDNHTWMAMTLWSIWKGLGWGAIMYIAAITGIDQEIYEAARVDGAG 220 I+ P+ L S H W+ M LWS+WKGLGWGAIMY+AAI GID +YE+AR+DGA Sbjct: 135 DWGL-ITMPIKFLDSGEHVWLTMLLWSLWKGLGWGAIMYLAAIAGIDPTLYESARIDGAN 193 Query: 221 RFRLMWHVTVPGIMPTFFVLLLLSIGNFINNGMEQFYVFQNAMNTNHIEVLDLYVYNIGM 280 RF+LM ++T P +MPT+ VLL+LSI N +NNGMEQ+YVFQNA N HI+VLDLYVYNIG+ Sbjct: 194 RFQLMRYITFPQLMPTYIVLLMLSIANILNNGMEQYYVFQNAFNKQHIQVLDLYVYNIGL 253 Query: 281 TNSNFGFATAXXXXXXXXXXXXXXXANTMSKVIRGDSI 318 T ++ A AN ++K +RG SI Sbjct: 254 TGNSLSMAAVLSMLKSIVSVLLLLAANGIAKRVRGTSI 291 >B3KDQ7.1 B3KDQ7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/270 (41%), Positives = 170/270 (62%), Gaps = 5/270 (1%) Query: 22 NDKYRLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSASEFMGLDWFTSMISNEI 81 ++ L+ M+LPF+V+ F+FSYLP++GW+ AF +Y+PG + +++GLD F ++ +++ Sbjct: 26 KEQKVLYGMSLPFIVIVFIFSYLPVWGWLMAFQNYKPGKGIFEQKWVGLDHFAALFADD- 84 Query: 82 QRQEVLRVLRNTFAISSLNIATS-VLPVIFAVFLVELRSTRFKKIVQTLTTLPNFISWVL 140 + VLRNT A+S + + +P++FAV L ELR + FK+ VQT++ LP+F+SWV+ Sbjct: 85 ---KFYLVLRNTLAMSFMGLIVGFTIPILFAVLLNELRGSVFKRTVQTISYLPHFVSWVV 141 Query: 141 VYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTLWSIWKGLGWGAIMYI 200 V + S I P+ +A N W +T IWK +GW AI+Y+ Sbjct: 142 VAGIVTKMLSTDGGAVNQLLMWLGLIDQPIQFMAQGNLFWYIVTGSDIWKEMGWSAIIYL 201 Query: 201 AAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSIGNFINNGMEQFYVFQ 260 AAITGIDQE +EAA+VDGA R R +WH+T+P I PT +LL++SIG+ I+ G E+ ++ Sbjct: 202 AAITGIDQEQFEAAKVDGASRIRQIWHITLPSIAPTIAILLIMSIGHLISIGFEKQFLLG 261 Query: 261 NAMNTNHIEVLDLYVYNIGMTNSNFGFATA 290 N + ++ EVLDLY N G+ F F TA Sbjct: 262 NPLVVDYSEVLDLYALNYGLGMGRFSFGTA 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,651,463,873 Number of extensions: 63036794 Number of successful extensions: 221476 Number of sequences better than 1.0e-05: 3236 Number of HSP's gapped: 220038 Number of HSP's successfully gapped: 3244 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)