BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0591.0003.p
         (186 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1C455.1 B1C455_9FIRM Putative uncharacterized protein                 67   5e-10
B5CP50.1 B5CP50_9FIRM Putative uncharacterized protein                 65   2e-09
A6VKF9.1 A6VKF9_ACTSZ Transcriptional regulator, TetR family           54   8e-06

>B1C455.1 B1C455_9FIRM Putative uncharacterized protein
          Length = 168

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 83  SQISISQITAKAQVSRNSFYRNYVDKEDILLKHIKNLISKWDADYQLINNDSNA--ELYG 140
           ++ISI +IT +AQV R SFYRNY  KEDIL +++  +I +W       N DS +  +L  
Sbjct: 28  NEISIREITTRAQVGRVSFYRNYKRKEDILEQYLFFIIKEWGES----NTDSLSMDKLLK 83

Query: 141 SLFKHLKEYSDFYLLLKKRNLFYLF 165
            LF+HL  Y DFY LL  + L YLF
Sbjct: 84  KLFEHLVSYRDFYTLLYTKGLLYLF 108


>B5CP50.1 B5CP50_9FIRM Putative uncharacterized protein
          Length = 188

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 82  LSQISISQITAKAQVSRNSFYRNYVDKEDILLKHIKNLISKWDADYQLINNDSNAELYGS 141
           L++ISIS+I   A V R SFYRNY  KED++ K +  LI +W+ DY+  N+ +      S
Sbjct: 45  LNEISISEICETAGVGRMSFYRNYESKEDVIKKQLLQLIQEWEKDYEGKNDPTY--FSES 102

Query: 142 LFKHLKEYSDFYLLLKKRNLFYLFL 166
           L +H  ++ DFYLLL  + L  + L
Sbjct: 103 LLRHYYKHKDFYLLLYNQGLSNMIL 127


>A6VKF9.1 A6VKF9_ACTSZ Transcriptional regulator, TetR family
          Length = 168

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 79  KYELSQISISQITAKAQVSRNSFYRNYVDKEDILLKHIKNLISKWDADYQLINNDSNAEL 138
           K     ISI++ITA A VSR SFYRN+  KED+L+KH   L  +    +  ++ D+  E 
Sbjct: 23  KKSFDNISITEITALAGVSRISFYRNFESKEDVLIKH---LYERAMTSFTALHADTVRER 79

Query: 139 YGSLFKHLKEYSDFYLLLKKRNLFYLFL 166
              LF    E  D   LL  + L +LFL
Sbjct: 80  LLGLFSVTDELGDVLDLLYSQGLSHLFL 107


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 719,186,490
Number of extensions: 37126916
Number of successful extensions: 64512
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 64604
Number of HSP's successfully gapped: 4
Length of query: 186
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 58
Effective length of database: 1,854,806,283
Effective search space: 107578764414
Effective search space used: 107578764414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)