BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0035.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6C7.1 B3K6C7_9BACI ABC transporter related 201 8e-50 A4XGX0.1 A4XGX0_CALS8 ABC transporter related 184 7e-45 B9MPQ1.1 B9MPQ1_ANATD ABC transporter related 182 4e-44 B5YCV1.1 B5YCV1_DICT6 ABC transporter, ATP-binding protein 181 6e-44 B8DZJ3.1 B8DZJ3_DICTD ABC transporter related 178 5e-43 >B3K6C7.1 B3K6C7_9BACI ABC transporter related Length = 551 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 104/226 (46%), Positives = 139/226 (61%) Query: 28 MDLLQPRLMESIVNDGVAAGNLGHITQTXXXXXXXXXXXXXXXVCCTIFSTIASQNFAGD 87 MDLLQP LM SI++ GV + HI T + CTI+S+IASQ F D Sbjct: 1 MDLLQPMLMASIIDRGVMQNDTTHILSTGLLMLGAAAIGLLGGLGCTIYSSIASQRFGAD 60 Query: 88 LRQAMFEKVQSFSIRNMERFESGSIVTRLTGDVVQLQNMVLMSLRMFPRQIFQFTGSLIM 147 LR+ +F KVQS S RN++ +GS++TRLT D+VQLQ MV M LR+F R F GS+IM Sbjct: 61 LRRDLFRKVQSLSFRNLDDISTGSLITRLTSDIVQLQTMVQMLLRIFVRSPFLAIGSMIM 120 Query: 148 AVLISPQXXXXXXXXXXXXXXXXXXFTRKSIPLYGDVQHKLDRLNLAMQENLSGILVVKA 207 AV+ISP+ R ++PL+ VQ KLD+LN ++EN +GI V KA Sbjct: 121 AVIISPKLAIILAIAVPLLFIVMFFLIRATLPLFATVQKKLDKLNTVLKENFAGIRVSKA 180 Query: 208 FVRSEYEELRFEGSNSRFLQASLKAARLMALNTPLVSMILNFSVVA 253 FVR+ YE+ RF +N F Q S+K R++ALN P+++MILN S+VA Sbjct: 181 FVRAGYEKDRFHDANQDFTQVSVKTQRIVALNMPILTMILNVSIVA 226 >A4XGX0.1 A4XGX0_CALS8 ABC transporter related Length = 578 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 147/253 (58%) Query: 1 VLKLIRFLKPYRXXXXXXXXXXXXEVTMDLLQPRLMESIVNDGVAAGNLGHITQTXXXXX 60 + KL R+L+PY EV MDL+QPR +E I++ G+ G++ +I +T Sbjct: 1 MFKLFRYLRPYTWAVVLAPLFMLLEVVMDLMQPRFLERIIDVGLKNGDMAYIFRTGLLMI 60 Query: 61 XXXXXXXXXXVCCTIFSTIASQNFAGDLRQAMFEKVQSFSIRNMERFESGSIVTRLTGDV 120 C +FS+IASQNFA DLR +F+K+ +FS +N++RF+ +++TRLT DV Sbjct: 61 LAALIGMVGGGGCVVFSSIASQNFAFDLRNDLFKKIMAFSFKNIDRFKPETLITRLTNDV 120 Query: 121 VQLQNMVLMSLRMFPRQIFQFTGSLIMAVLISPQXXXXXXXXXXXXXXXXXXFTRKSIPL 180 +Q+QN+V+MSLR+ R F G L+MAV+I+P+ +KS PL Sbjct: 121 MQMQNVVMMSLRIVVRAPLLFIGGLVMAVMINPKLSIILFIAIPFVILIFYFMVKKSFPL 180 Query: 181 YGDVQHKLDRLNLAMQENLSGILVVKAFVRSEYEELRFEGSNSRFLQASLKAARLMALNT 240 + +Q K+DR+N M+ENL G +VKAFVR E+E+ RF +N L S +A L+ + Sbjct: 181 FSTLQKKIDRVNAVMRENLLGARLVKAFVRHEHEKSRFLKANQDLLNISFQAFGLIVITM 240 Query: 241 PLVSMILNFSVVA 253 PL ++N S+V Sbjct: 241 PLFVFVMNMSMVG 253 >B9MPQ1.1 B9MPQ1_ANATD ABC transporter related Length = 578 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 148/253 (58%) Query: 1 VLKLIRFLKPYRXXXXXXXXXXXXEVTMDLLQPRLMESIVNDGVAAGNLGHITQTXXXXX 60 ++KL R+LKPY EV MDL+QPR +E I++ G+ G++ +I +T Sbjct: 1 MIKLFRYLKPYTWAVVLAPLFMLLEVVMDLMQPRFLERIIDVGLKNGDMAYIFKTGLLMI 60 Query: 61 XXXXXXXXXXVCCTIFSTIASQNFAGDLRQAMFEKVQSFSIRNMERFESGSIVTRLTGDV 120 C +FS+IASQNFA DLR +F KV +FS +N++RF +++TRLT DV Sbjct: 61 LAALIGMVGGGGCVVFSSIASQNFAYDLRCDLFRKVMAFSFKNVDRFRPETLITRLTNDV 120 Query: 121 VQLQNMVLMSLRMFPRQIFQFTGSLIMAVLISPQXXXXXXXXXXXXXXXXXXFTRKSIPL 180 +Q+QN+V+M LR+ R F G L+MA+ I+ + +KS P+ Sbjct: 121 MQIQNVVMMMLRIVVRAPLLFIGGLVMALTINVKLSLVLFTAIPFVILIFYFMIKKSFPM 180 Query: 181 YGDVQHKLDRLNLAMQENLSGILVVKAFVRSEYEELRFEGSNSRFLQASLKAARLMALNT 240 + ++Q K+DR+N M+ENL G VVKAFVR E+E+ RF +N + LQ SLKA + ++ Sbjct: 181 FSELQKKIDRVNAVMRENLLGSRVVKAFVRHEHEKNRFFDANQQLLQTSLKAFGFVVISM 240 Query: 241 PLVSMILNFSVVA 253 PL +++N ++V Sbjct: 241 PLFGLVMNMAMVG 253 >B5YCV1.1 B5YCV1_DICT6 ABC transporter, ATP-binding protein Length = 577 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 141/252 (55%) Query: 3 KLIRFLKPYRXXXXXXXXXXXXEVTMDLLQPRLMESIVNDGVAAGNLGHITQTXXXXXXX 62 KL++FLKPY EV DL QP L+ IV+ G+ N I T Sbjct: 3 KLLKFLKPYTYAVVLAPLLMLVEVVCDLYQPTLLARIVDQGILKNNFQVIWNTGLIMIGI 62 Query: 63 XXXXXXXXVCCTIFSTIASQNFAGDLRQAMFEKVQSFSIRNMERFESGSIVTRLTGDVVQ 122 + CT+F++IASQNF DLR +F+KVQ FS N+++F++ S++TRLT DVVQ Sbjct: 63 ALIGMVGGIGCTVFASIASQNFGRDLRNELFKKVQKFSFHNIDKFKTSSLITRLTNDVVQ 122 Query: 123 LQNMVLMSLRMFPRQIFQFTGSLIMAVLISPQXXXXXXXXXXXXXXXXXXFTRKSIPLYG 182 LQ +V+MSLR+ R F G +IMA+ ++ +KS PL+ Sbjct: 123 LQTLVMMSLRIMVRAPLLFIGGIIMAISLNKNLSFIFLLSIPILILLFLFIMKKSFPLFS 182 Query: 183 DVQHKLDRLNLAMQENLSGILVVKAFVRSEYEELRFEGSNSRFLQASLKAARLMALNTPL 242 +VQ ++D +N ++ENL GI VV+AF R +YE+ RF +NS + A +KA LM + PL Sbjct: 183 EVQKRIDYVNNVVRENLVGIRVVRAFRREDYEKERFRYANSALMNAVIKAIMLMIIAMPL 242 Query: 243 VSMILNFSVVAA 254 +++N S++A Sbjct: 243 FMLVMNLSILAV 254 >B8DZJ3.1 B8DZJ3_DICTD ABC transporter related Length = 577 Score = 178 bits (451), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 140/252 (55%) Query: 3 KLIRFLKPYRXXXXXXXXXXXXEVTMDLLQPRLMESIVNDGVAAGNLGHITQTXXXXXXX 62 KL++FLKPY EV DL QP L+ IV+ G+ N I T Sbjct: 3 KLLKFLKPYTYAVILAPLLMLVEVICDLYQPNLLAKIVDQGILKNNFQVILNTGLIMLGI 62 Query: 63 XXXXXXXXVCCTIFSTIASQNFAGDLRQAMFEKVQSFSIRNMERFESGSIVTRLTGDVVQ 122 V CTIFS+IASQNF DLR +F+KVQ S ++++F+S S++TRLT DV Q Sbjct: 63 AMIGMIGGVGCTIFSSIASQNFGKDLRNELFKKVQKLSFHSIDKFKSSSLITRLTNDVTQ 122 Query: 123 LQNMVLMSLRMFPRQIFQFTGSLIMAVLISPQXXXXXXXXXXXXXXXXXXFTRKSIPLYG 182 LQ +V+M+LR+ R F G +IMA+ ++ ++S PL+ Sbjct: 123 LQTLVMMALRIMVRAPLLFIGGIIMAISLNKNLSFIFLLSIPVLIALFLFIMKRSFPLFS 182 Query: 183 DVQHKLDRLNLAMQENLSGILVVKAFVRSEYEELRFEGSNSRFLQASLKAARLMALNTPL 242 +VQ ++D +N ++ENL GI +V+AF R +YE RF+ +N+ + A +KA LM + PL Sbjct: 183 EVQKRIDYVNSVVRENLVGIRLVRAFRREDYERERFKYANTALMNAIIKALMLMIIAMPL 242 Query: 243 VSMILNFSVVAA 254 +I+NFS++A Sbjct: 243 FMLIMNFSILAV 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,176,270,172 Number of extensions: 33738340 Number of successful extensions: 86233 Number of sequences better than 1.0e-05: 1568 Number of HSP's gapped: 86129 Number of HSP's successfully gapped: 1568 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)