BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0034.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6C7.1 B3K6C7_9BACI ABC transporter related 251 5e-65 C0V100.1 C0V100_9BACT ABC-type multidrug transport system, ATPas... 250 9e-65 A9U7Y2.1 A9U7Y2_PHYPA ATP-binding cassette transporter, subfamil... 244 5e-63 B9MPQ1.1 B9MPQ1_ANATD ABC transporter related 239 2e-61 A5MZ88.1 A5MZ88_CLOK5 Predicted transport protein 236 2e-60 >B3K6C7.1 B3K6C7_9BACI ABC transporter related Length = 551 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 124/254 (48%), Positives = 169/254 (66%), Gaps = 1/254 (0%) Query: 4 NTQQDAQDNFC-GRLAFEHVSLSYDGNLDHAVLHDIDFIAEPGQTVGMIGVNGAGKSTLA 62 N Q A D + G + F+ V+ SY+ + VL DI F PGQ V ++G G+GK++L Sbjct: 291 NEVQPATDAYKQGEIMFDRVTFSYNSEMQKPVLRDISFKVRPGQHVAIMGATGSGKTSLV 350 Query: 63 SLIPGFYKATGGRITIDYVNIDTLASEKLHQHVGMVLQQALLFSGTVLENIRYGNPXXXX 122 SL+P Y T G+I ID ++ + L + +G+VLQ+++LF+GT+ +NIRYG P Sbjct: 351 SLLPRLYDVTSGQIRIDGTDVRRMELSALRERIGIVLQESILFTGTIRDNIRYGKPDASD 410 Query: 123 XXXXXXXXXXXXHDFISKLPHGYGTVLGQRGVNLSGGQKQRISIAPTLLLKPGMIILDDC 182 HDFI+ +P GY TVLGQRGVNLSGGQKQRISIA LLL+P ++ILDD Sbjct: 411 EEVMASAKAAQAHDFITSMPDGYDTVLGQRGVNLSGGQKQRISIARALLLQPAILILDDS 470 Query: 183 TSAVDLRTDYRIRSSLRQVMKRTTCLIIAQRIASIQHADLILVLDEGRITARGTHETLLA 242 TSA+D T+ R+R L ++MK TCL+IAQRI+S+ ADLILVLD+G + A+GTH LLA Sbjct: 471 TSAIDTGTESRLRKELARLMKDRTCLMIAQRISSVIDADLILVLDDGELIAKGTHHELLA 530 Query: 243 TSQLYRDIALSQQG 256 + ++Y+DI SQ G Sbjct: 531 SCEVYQDIYRSQFG 544 >C0V100.1 C0V100_9BACT ABC-type multidrug transport system, ATPase and permease component Length = 581 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 15 GRLAFEHVSLSYDGNLDHAVLHDIDFIAEPGQTVGMIGVNGAGKSTLASLIPGFYKATGG 74 GR+ F+HV+ SYD + VL DI F+AEPGQ +G+IG G+GKSTL SLIP FY T G Sbjct: 333 GRVEFQHVTFSYDHSGGDPVLRDISFVAEPGQMIGIIGPTGSGKSTLVSLIPRFYDPTCG 392 Query: 75 RITIDYVNIDTLASEKLHQHVGMVLQQALLFSGTVLENIRYGNPXXXXXXXXXXXXXXXX 134 R+ +D V++ + E L + VG+ LQ+A+LFSGT+ +NIR+G P Sbjct: 393 RVLLDGVDVREMDEELLRRSVGVALQEAVLFSGTIRDNIRFGRPEASDEEVEWAAKLAQA 452 Query: 135 HDFISKLPHGYGTVLGQRGVNLSGGQKQRISIAPTLLLKPGMIILDDCTSAVDLRTDYRI 194 HDFI P GY +V+GQRGVNLSGGQKQR++IA LL++P +++LDD TSAVD T+ RI Sbjct: 453 HDFIMSFPDGYDSVVGQRGVNLSGGQKQRLAIARALLVRPKVLVLDDSTSAVDAETESRI 512 Query: 195 RSSLRQVMKRTTCLIIAQRIASIQHADLILVLDEGRITARGTHETLLATSQLYRDIALSQ 254 +++LR++ R T ++AQRI+S+ AD ILVL++GRI A+GTH+ L+ TS YR+I SQ Sbjct: 513 QAALREL--RQTRFVVAQRISSVMPADKILVLEDGRIVAQGTHDELMQTSPAYREIYESQ 570 >A9U7Y2.1 A9U7Y2_PHYPA ATP-binding cassette transporter, subfamily B, member 17, group ATM-like protein PpABCB17 (Fragment) Length = 312 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 130/253 (51%), Positives = 172/253 (67%), Gaps = 3/253 (1%) Query: 5 TQQDAQDNFCGRLAFEHVSLSYDGNLDHA--VLHDIDFIAEPGQTVGMIGVNGAGKSTLA 62 T A++ + FE+VS Y G +A VL I F A+PGQT ++GV G+GKS+L Sbjct: 51 TGAQAKEPAAADVVFENVSFGY-GEHPYADPVLSGISFTAKPGQTTAILGVTGSGKSSLV 109 Query: 63 SLIPGFYKATGGRITIDYVNIDTLASEKLHQHVGMVLQQALLFSGTVLENIRYGNPXXXX 122 LIP Y ATGGR+ I ++ + + L VGM LQQ++LFSGTVL+NIRYG P Sbjct: 110 HLIPRLYDATGGRVLIGGTDVRDIPLDILRGMVGMTLQQSVLFSGTVLDNIRYGRPGAPL 169 Query: 123 XXXXXXXXXXXXHDFISKLPHGYGTVLGQRGVNLSGGQKQRISIAPTLLLKPGMIILDDC 182 HDFI ++P GY TV+GQ+GVNLSGGQKQR+SIA LL+KP ++ILDD Sbjct: 170 EEVTAAAKAAQAHDFIMEMPDGYETVIGQKGVNLSGGQKQRLSIARALLVKPRILILDDS 229 Query: 183 TSAVDLRTDYRIRSSLRQVMKRTTCLIIAQRIASIQHADLILVLDEGRITARGTHETLLA 242 TSAVD+ T+ RI+++L+++M R+T +IIAQRI+S+ AD ILVL+ G I ARGTHE LL Sbjct: 230 TSAVDVGTESRIQAALKELMNRSTNIIIAQRISSVMEADQILVLENGSIAARGTHEELLR 289 Query: 243 TSQLYRDIALSQQ 255 TS +Y+DI SQ+ Sbjct: 290 TSAIYQDIYRSQR 302 >B9MPQ1.1 B9MPQ1_ANATD ABC transporter related Length = 578 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 114/242 (47%), Positives = 160/242 (66%) Query: 15 GRLAFEHVSLSYDGNLDHAVLHDIDFIAEPGQTVGMIGVNGAGKSTLASLIPGFYKATGG 74 G++ F +V+ Y+ N + L +I F+A PG+ +G+IG GAGKSTL SLIP Y AT G Sbjct: 330 GKVEFRNVTFYYNENEESPALENISFVANPGEVIGIIGTTGAGKSTLVSLIPRLYDATYG 389 Query: 75 RITIDYVNIDTLASEKLHQHVGMVLQQALLFSGTVLENIRYGNPXXXXXXXXXXXXXXXX 134 + ID +N+ + L + + MVLQ+ +LF+G++ ENI +GN Sbjct: 390 EVLIDDINVKDYDVDVLRKSISMVLQETILFTGSLKENIAWGNEEASMEQIIEAAKAAQA 449 Query: 135 HDFISKLPHGYGTVLGQRGVNLSGGQKQRISIAPTLLLKPGMIILDDCTSAVDLRTDYRI 194 HDFI GY T + +RGVNLSGGQKQRISIA +L KP ++ILDDCTSAVD+ T+ +I Sbjct: 450 HDFIMSFEKGYDTDVSERGVNLSGGQKQRISIARAILKKPKILILDDCTSAVDMATEKKI 509 Query: 195 RSSLRQVMKRTTCLIIAQRIASIQHADLILVLDEGRITARGTHETLLATSQLYRDIALSQ 254 +++L++ + TT IIAQRI+SI+HAD ILV+D G++ A GTHE LL T +Y++I +Q Sbjct: 510 QAALKEYIDGTTTFIIAQRISSIKHADKILVMDAGKVVAMGTHEELLKTCPIYQEIYYTQ 569 Query: 255 QG 256 G Sbjct: 570 MG 571 >A5MZ88.1 A5MZ88_CLOK5 Predicted transport protein Length = 572 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 114/242 (47%), Positives = 157/242 (64%), Gaps = 2/242 (0%) Query: 15 GRLAFEHVSLSYDGNLDHAVLHDIDFIAEPGQTVGMIGVNGAGKSTLASLIPGFYKATGG 74 GR+ FE VS SY H V+H+I F PG+T+G+IG G+GKS+L +LIPGFY A G Sbjct: 329 GRVDFEDVSFSYANG--HEVIHNISFTCMPGETLGIIGATGSGKSSLVNLIPGFYDAASG 386 Query: 75 RITIDYVNIDTLASEKLHQHVGMVLQQALLFSGTVLENIRYGNPXXXXXXXXXXXXXXXX 134 R+ +D V++ + L + V +V Q+ +LF+G+VLENIR+G Sbjct: 387 RVKVDGVDVKDINKRILREKVALVPQKTMLFTGSVLENIRWGKENASLEEVKEAAETAEA 446 Query: 135 HDFISKLPHGYGTVLGQRGVNLSGGQKQRISIAPTLLLKPGMIILDDCTSAVDLRTDYRI 194 +FIS+ P Y T LGQ GVN SGGQKQR+SIA L+ KP ++ILDDCTSAVD T+ +I Sbjct: 447 DEFISRFPEQYNTKLGQGGVNFSGGQKQRVSIARALIKKPEILILDDCTSAVDAATEVKI 506 Query: 195 RSSLRQVMKRTTCLIIAQRIASIQHADLILVLDEGRITARGTHETLLATSQLYRDIALSQ 254 R L++ TC+IIAQ+I+S+ AD I+VLDEG++ G H+ L+ ++Y+DI LSQ Sbjct: 507 REKLKKYSNNLTCIIIAQKISSVISADKIIVLDEGKLVGMGNHDQLMKNCEVYKDIFLSQ 566 Query: 255 QG 256 G Sbjct: 567 VG 568 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,343,865,222 Number of extensions: 49425137 Number of successful extensions: 407656 Number of sequences better than 1.0e-05: 35886 Number of HSP's gapped: 388842 Number of HSP's successfully gapped: 38692 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)