BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0032.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6C8.1 B3K6C8_9BACI ABC transporter related                         124   3e-27
Q2B0E7.1 Q2B0E7_9BACI Putative uncharacterized protein (Fragment)     109   1e-22
C2C115.1 C2C115_LISGR ABC superfamily ATP binding cassette trans...   108   1e-22
C0CPC0.1 C0CPC0_9FIRM Putative uncharacterized protein                107   4e-22
Q8ERR9.1 Q8ERR9_OCEIH ABC transporter ATP-binding protein             103   7e-21

>B3K6C8.1 B3K6C8_9BACI ABC transporter related
          Length = 615

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 80/106 (75%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           MSRTTNDI+N+  +LNQS+ Q+ISS++ L GSL +ML LN WLTL+++VT PL+  F   
Sbjct: 156 MSRTTNDIENVSGTLNQSVTQLISSVLSLIGSLAIMLYLNMWLTLLSMVTIPLVMLFTKT 215

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           VASRT   F  QQ  LG+LNGFI+ETVSG +VV ++ +E+  A++F
Sbjct: 216 VASRTRKHFSKQQSLLGELNGFIDETVSGQKVVQVYRRERHAAAQF 261


>Q2B0E7.1 Q2B0E7_9BACI Putative uncharacterized protein (Fragment)
          Length = 509

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 77/107 (71%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           MSR TNDI+N+ ++LN S++Q+ SS++ L G++ +ML L+  LTLI ++  P++ +    
Sbjct: 49  MSRVTNDIENVSSTLNSSVIQVFSSVLTLVGTVGVMLWLSPLLTLITMIIVPVMFYGMKW 108

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEFI 107
           + +RTG  FK QQ+ LG+LNGF++ET+SG R+V  F QE R+  EFI
Sbjct: 109 ITNRTGRLFKEQQRNLGELNGFVQETISGQRIVKTFSQEDRVIEEFI 155


>C2C115.1 C2C115_LISGR ABC superfamily ATP binding cassette transporter,
           ABC/membrane protein
          Length = 612

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 72/106 (67%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           MSR TNDIDN+  SLN S+++I+SS++   G L  ML L+  LTLI++V  P++ +    
Sbjct: 150 MSRMTNDIDNVGRSLNDSIIEILSSLLTFVGILCFMLYLSPILTLISLVVIPIMYFGMRW 209

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           +  RT   FK QQ+ELGKLNGF+EETVSG   V  FH+E++   EF
Sbjct: 210 ITKRTSVYFKEQQRELGKLNGFMEETVSGQLTVKTFHREEQTLKEF 255


>C0CPC0.1 C0CPC0_9FIRM Putative uncharacterized protein
          Length = 611

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 72/106 (67%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           +SR TNDID +  SLNQS+ Q+I+SI ML G   MML +N W+TLIAV+  P+  +    
Sbjct: 150 LSRVTNDIDTLQVSLNQSITQLITSITMLIGVFVMMLSINVWMTLIAVLILPISGFIIGK 209

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           V  R+   F+AQQ+ LG++NG IEET  GH VV +F+QE+ +  EF
Sbjct: 210 VMKRSQKYFQAQQKYLGEVNGQIEETYGGHNVVRVFNQEEAVLEEF 255


>Q8ERR9.1 Q8ERR9_OCEIH ABC transporter ATP-binding protein
          Length = 601

 Score =  103 bits (256), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 74/106 (69%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           MSR TNDIDNI N+LNQS++QI SS++ L G+L +ML L+  LT++A+   P++      
Sbjct: 147 MSRLTNDIDNINNTLNQSVIQIFSSVLTLVGTLVVMLYLSPILTVVAMSIIPVMYVAMRW 206

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           +  RTG  +K QQ+ LG++NG++EE VSG  VV  + QE+ + ++F
Sbjct: 207 ITQRTGPLYKLQQRHLGEVNGYVEEIVSGQHVVKTYSQEKYVTNQF 252


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 507,258,803
Number of extensions: 15526393
Number of successful extensions: 123197
Number of sequences better than 1.0e-05: 1305
Number of HSP's gapped: 123731
Number of HSP's successfully gapped: 1308
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)