BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0031.p
         (105 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6BGT3.1 A6BGT3_9FIRM Putative uncharacterized protein                120   3e-26
B2TL77.1 B2TL77_CLOBB Lipid A export ATP-binding/permease protei...   119   6e-26
Q8DYY5.1 Q8DYY5_STRA5 ABC transporter, ATP-binding/permease protein   117   3e-25
Q3K0H5.1 Q3K0H5_STRA1 ABC transporter, ATP-binding/permease protein   117   3e-25
Q3DJH8.1 Q3DJH8_STRAG ABC transporter, ATP-binding/permease protein   117   3e-25

>A6BGT3.1 A6BGT3_9FIRM Putative uncharacterized protein
          Length = 604

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 69/84 (82%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           ML+D  +LILDEATSSVDT  EIQIQKA+ Q++ GRTSFVIAHRLSTIR AD ILV++DG
Sbjct: 515 MLADPKILILDEATSSVDTRTEIQIQKAMDQLMKGRTSFVIAHRLSTIRDADVILVMKDG 574

Query: 61  RIAEQGNHEQLLQRKGLYYELQSS 84
            I EQGNHE+LL + G Y EL +S
Sbjct: 575 DIVEQGNHEELLAQNGFYAELYNS 598


>B2TL77.1 B2TL77_CLOBB Lipid A export ATP-binding/permease protein MsbA
           EC=3.6.3.-
          Length = 593

 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 70/84 (83%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           ++SD A+LILDEATSSVDT  E+ +QKA+K V+ GRTSFVIAHRLSTIR+AD ILVI DG
Sbjct: 502 IISDPAILILDEATSSVDTRIELMLQKAMKNVMKGRTSFVIAHRLSTIRNADLILVINDG 561

Query: 61  RIAEQGNHEQLLQRKGLYYELQSS 84
            I EQGNHE+L+++ G Y +L +S
Sbjct: 562 NIVEQGNHEELMEKYGFYEKLYNS 585


>Q8DYY5.1 Q8DYY5_STRA5 ABC transporter, ATP-binding/permease protein
          Length = 589

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 71/84 (84%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           +L+D  +LILDEATSSVDT  E+ IQKA+K+++ GRTSFVIAHRLSTI+ AD ILV++DG
Sbjct: 500 LLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDG 559

Query: 61  RIAEQGNHEQLLQRKGLYYELQSS 84
           +I EQGNH++LL  KG YYEL +S
Sbjct: 560 QIIEQGNHQKLLADKGFYYELYNS 583


>Q3K0H5.1 Q3K0H5_STRA1 ABC transporter, ATP-binding/permease protein
          Length = 589

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 71/84 (84%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           +L+D  +LILDEATSSVDT  E+ IQKA+K+++ GRTSFVIAHRLSTI+ AD ILV++DG
Sbjct: 500 LLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDG 559

Query: 61  RIAEQGNHEQLLQRKGLYYELQSS 84
           +I EQGNH++LL  KG YYEL +S
Sbjct: 560 QIIEQGNHQKLLADKGFYYELYNS 583


>Q3DJH8.1 Q3DJH8_STRAG ABC transporter, ATP-binding/permease protein
          Length = 589

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 71/84 (84%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           +L+D  +LILDEATSSVDT  E+ IQKA+K+++ GRTSFVIAHRLSTI+ AD ILV++DG
Sbjct: 500 LLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDG 559

Query: 61  RIAEQGNHEQLLQRKGLYYELQSS 84
           +I EQGNH++LL  KG YYEL +S
Sbjct: 560 QIIEQGNHQKLLADKGFYYELYNS 583


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.130    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 504,476,596
Number of extensions: 16357498
Number of successful extensions: 96355
Number of sequences better than 1.0e-05: 12642
Number of HSP's gapped: 97130
Number of HSP's successfully gapped: 13356
Length of query: 105
Length of database: 3,060,696,203
Length adjustment: 73
Effective length of query: 32
Effective length of database: 2,372,962,108
Effective search space: 75934787456
Effective search space used: 75934787456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)