BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0029.p
         (68 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBB9.1 B3KBB9_9BACI Putative uncharacterized protein                 81   3e-14
B1DBI6.1 B1DBI6_9BACL Putative uncharacterized protein                 80   4e-14
B0TIB0.1 B0TIB0_HELMI Conserved domain protein                         76   8e-13
B7DQ86.1 B7DQ86_9BACL Putative uncharacterized protein                 75   2e-12
A4J4J5.1 A4J4J5_DESRM Putative uncharacterized protein                 74   5e-12

>B3KBB9.1 B3KBB9_9BACI Putative uncharacterized protein
          Length = 68

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 49/68 (72%)

Query: 1  MTVASQVKTCVSSLKSAQASLEQFALETQNQEAKNLFTNXXXXXXXXXXXXESRVTELEK 60
          MTVAS VKTC+SSLKSAQASLEQFAL TQ+Q AK+LFT               RV +LE+
Sbjct: 1  MTVASDVKTCLSSLKSAQASLEQFALSTQDQNAKDLFTTAAQQTQQVVDQVAQRVQQLEQ 60

Query: 61 EEPQYKGF 68
          EEPQYKGF
Sbjct: 61 EEPQYKGF 68


>B1DBI6.1 B1DBI6_9BACL Putative uncharacterized protein
          Length = 68

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 46/68 (67%)

Query: 1  MTVASQVKTCVSSLKSAQASLEQFALETQNQEAKNLFTNXXXXXXXXXXXXESRVTELEK 60
          MTVAS VKTCV+SLKSAQASLEQFAL T+N+ AK +F               SRV ELE 
Sbjct: 1  MTVASDVKTCVASLKSAQASLEQFALSTENKSAKQMFEQAAQQTQTIVDQVASRVKELEN 60

Query: 61 EEPQYKGF 68
          EEPQY GF
Sbjct: 61 EEPQYLGF 68


>B0TIB0.1 B0TIB0_HELMI Conserved domain protein
          Length = 68

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 46/68 (67%)

Query: 1  MTVASQVKTCVSSLKSAQASLEQFALETQNQEAKNLFTNXXXXXXXXXXXXESRVTELEK 60
          MTV+ Q+K  ++ LKSA  SLEQFA++TQ+Q AKNL+T             E RV E+EK
Sbjct: 1  MTVSQQLKQTIAGLKSAVGSLEQFAIQTQDQNAKNLYTTASQQAQQIVNSLEPRVKEIEK 60

Query: 61 EEPQYKGF 68
          EEPQYKGF
Sbjct: 61 EEPQYKGF 68


>B7DQ86.1 B7DQ86_9BACL Putative uncharacterized protein
          Length = 68

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 1  MTVASQVKTCVSSLKSAQASLEQFALETQNQEAKNLFTNXXXXXXXXXXXXESRVTELEK 60
          MT+A QVKT +++LKSAQA+LE FAL T NQ+AK L+T             ++RV E+E+
Sbjct: 1  MTIAQQVKTTLANLKSAQANLESFALATDNQKAKQLYTQAAEQTQQVVQQLQARVAEIEQ 60

Query: 61 EEPQYKGF 68
          EEPQYKGF
Sbjct: 61 EEPQYKGF 68


>A4J4J5.1 A4J4J5_DESRM Putative uncharacterized protein
          Length = 68

 Score = 73.9 bits (180), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 47/68 (69%)

Query: 1  MTVASQVKTCVSSLKSAQASLEQFALETQNQEAKNLFTNXXXXXXXXXXXXESRVTELEK 60
          MTV+SQVK  ++SLKS QA+ E FAL TQNQ+AK+++T             E R+ ++E+
Sbjct: 1  MTVSSQVKQSLASLKSTQANFETFALNTQNQQAKDMYTQAAQQTQSIIDSLEPRIQQMEQ 60

Query: 61 EEPQYKGF 68
          EEPQYKGF
Sbjct: 61 EEPQYKGF 68


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.304    0.116    0.292 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 216,605,773
Number of extensions: 3922373
Number of successful extensions: 4170
Number of sequences better than 1.0e-05: 194
Number of HSP's gapped: 4171
Number of HSP's successfully gapped: 194
Length of query: 68
Length of database: 3,060,696,203
Length adjustment: 40
Effective length of query: 28
Effective length of database: 2,683,855,603
Effective search space: 75147956884
Effective search space used: 75147956884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 125 (52.8 bits)