BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0024.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I6A1.1 B8I6A1_CLOCE ATPase associated with various cellular ac... 374 e-102 Q67NI8.1 Q67NI8_SYMTH Methanol dehydrogenase regulatory protein 369 e-100 Q8RCQ1.1 Q8RCQ1_THETN MoxR-like ATPases 366 1e-99 B3KIV9.1 B3KIV9_9BACI ATPase associated with various cellular ac... 366 2e-99 B1DLY1.1 B1DLY1_9BACL ATPase associated with various cellular ac... 365 4e-99 >B8I6A1.1 B8I6A1_CLOCE ATPase associated with various cellular activities AAA_3 Length = 314 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/286 (60%), Positives = 225/286 (78%) Query: 9 MMLQEAAALIQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLAR 68 M L + ++ I+E+++KVIVGK + +DL L ++ GH+LLEDVPGTGKT+ A++LA Sbjct: 1 MELGDIGLIVHKIKESISKVIVGKEDIIDLSLICIITGGHMLLEDVPGTGKTVFARSLAA 60 Query: 69 SLDCSFKRIQFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSS 128 S+DCSF+RIQFTPDLLPSD++GINFYNQK F FRPGPVFS+I+LADEINRATPRTQSS Sbjct: 61 SVDCSFRRIQFTPDLLPSDVTGINFYNQKESNFTFRPGPVFSNIVLADEINRATPRTQSS 120 Query: 129 LLECMEERQITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFE 188 +LECMEE+Q+TIDG T L APF VIATQNPV+ QGTFPLPEAQLDRFL++ + GYP + Sbjct: 121 MLECMEEKQVTIDGETRRLAAPFFVIATQNPVEIQGTFPLPEAQLDRFLIKTSMGYPDTK 180 Query: 189 EGVHILQRFRENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSV 248 + IL+RF+ENNPL E AV S +I + ++ + V VS+D++ YII + EATR+ V Sbjct: 181 SSIGILKRFKENNPLTELKAVVSADEICKASEIYSKVKVSEDIMEYIINVAEATRKHSGV 240 Query: 249 KLGASPRAGFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLL 294 LG SPR +L++AAQ AL++ R +V PDDIKA+A+PVLAHR++ Sbjct: 241 HLGVSPRGTLSLMKAAQVHALLKGRTFVTPDDIKAMAVPVLAHRII 286 >Q67NI8.1 Q67NI8_SYMTH Methanol dehydrogenase regulatory protein Length = 319 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/298 (60%), Positives = 231/298 (77%), Gaps = 5/298 (1%) Query: 11 LQEAAALIQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSL 70 +++ AAL IR N+ KV+VGKA+ ++LLL AL A GHVL+EDVPGTGKTMLAK+LARSL Sbjct: 1 MEQMAALAARIRANMEKVMVGKADVIELLLVALAAGGHVLIEDVPGTGKTMLAKSLARSL 60 Query: 71 DCSFKRIQFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLL 130 D +F+RIQFTPDLLPSD++G++++NQKTGEF+FRPGPVF+ +LLADEINRATPRTQS+LL Sbjct: 61 DVTFRRIQFTPDLLPSDVTGLSYFNQKTGEFEFRPGPVFAQVLLADEINRATPRTQSALL 120 Query: 131 ECMEERQITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEG 190 ECMEERQ+T++GVT L PFLV+ATQNPV+ +GTFPLPEAQLDRFL+++ GYP+ +E Sbjct: 121 ECMEERQVTVEGVTRPLARPFLVLATQNPVEQEGTFPLPEAQLDRFLLKLPAGYPSADEE 180 Query: 191 VHILQRFRENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSVKL 250 + +L RFR +P E + VA+ +I LQQ V V+ + YI+ + ATR A ++L Sbjct: 181 MAMLDRFRSGDPYRELAPVATADEILALQQAVPQVHVARPVQQYIVDLARATRSAEGIEL 240 Query: 251 GASPRAGFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQ-----RGPGSRE 303 G SPR ALLRA+Q A +R RDYVLPDD++ +A PVLAHRL+ RG G+ E Sbjct: 241 GVSPRGTLALLRASQALAAVRGRDYVLPDDVQYLARPVLAHRLVTSTQLRLRGRGAAE 298 >Q8RCQ1.1 Q8RCQ1_THETN MoxR-like ATPases Length = 314 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 169/289 (58%), Positives = 223/289 (77%), Gaps = 1/289 (0%) Query: 13 EAAALIQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSLDC 72 E + +I+ IR+N+ KVI+GK+E +DL+L AL+A+GHVLLEDVPG GKT LAK LARS+DC Sbjct: 4 EQSEVIERIRKNIEKVIIGKSEVIDLMLTALIASGHVLLEDVPGVGKTSLAKALARSIDC 63 Query: 73 SFKRIQFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLLEC 132 FKR+QFTPDLLP DL+GIN +NQK G+F+F+ GP+F++ILLADEINRATPRTQSSLLEC Sbjct: 64 DFKRVQFTPDLLPGDLTGINVFNQKIGDFEFKKGPIFTNILLADEINRATPRTQSSLLEC 123 Query: 133 MEERQITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEGVH 192 MEERQ+T+DGVT++L+ PF VIATQNP++S GTFPLPEAQ+DRFLM++ GYP EE Sbjct: 124 MEERQVTVDGVTYKLDRPFFVIATQNPIESYGTFPLPEAQIDRFLMKVKMGYPKREEEKR 183 Query: 193 ILQRFRENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSVKLGA 252 I++ F + NPL E V + D+ ++Q+ V V D+ YI+ IVE TR ++LGA Sbjct: 184 IIEVFDKKNPLEELKPVCTKEDVLKMQEEYKEVYVDKDVSEYILDIVEKTRNMEEIELGA 243 Query: 253 SPRAGFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQRGPGS 301 SPRA L + +Q A ++ RD+V PDD++ +A VLAHR++L +G G Sbjct: 244 SPRATLFLYKTSQAYAYVKGRDFVTPDDVRYIAPFVLAHRIIL-KGSGK 291 >B3KIV9.1 B3KIV9_9BACI ATPase associated with various cellular activities AAA_3 Length = 326 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 173/304 (56%), Positives = 230/304 (75%) Query: 4 MVLFFMMLQEAAALIQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLA 63 MV + L IR N++KV+VGK + +D L A++ +GHVLLEDVPGTGKT+LA Sbjct: 1 MVTIITDYHDVRRLADDIRANVSKVMVGKEQLIDRLFIAMVTSGHVLLEDVPGTGKTLLA 60 Query: 64 KTLARSLDCSFKRIQFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATP 123 K+++RS+DC+FKR+QFTPDLLPSDLSGI FYNQ++ F+FRPGP+F++ILLADEINRATP Sbjct: 61 KSISRSIDCTFKRVQFTPDLLPSDLSGIYFYNQQSATFEFRPGPLFTNILLADEINRATP 120 Query: 124 RTQSSLLECMEERQITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTG 183 RTQSSLLECMEE QI+IDGVTH+L+ PFLVIATQNP++ QGTFPLPEAQLDRFL ++ G Sbjct: 121 RTQSSLLECMEEHQISIDGVTHQLKEPFLVIATQNPLEQQGTFPLPEAQLDRFLFKLNMG 180 Query: 184 YPTFEEGVHILQRFRENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATR 243 YPT EE V+IL+RF++ PL +A+A+ I + + + + V VSD++L YI+ + E +R Sbjct: 181 YPTSEESVNILKRFKDEQPLESLTAIAASDRIVQARHIVSKVHVSDEMLAYIVELSEHSR 240 Query: 244 QAPSVKLGASPRAGFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQRGPGSRE 303 + +V G SPR ALL+A Q A++ R++V PDD+K +A+P AHRL L+ +R Sbjct: 241 RDEAVASGVSPRGCQALLKAVQVQAVLNGREFVTPDDVKELAVPTWAHRLKLRGTLHNRG 300 Query: 304 GQAA 307 G A Sbjct: 301 GATA 304 >B1DLY1.1 B1DLY1_9BACL ATPase associated with various cellular activities AAA_3 Length = 319 Score = 365 bits (936), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 175/288 (60%), Positives = 220/288 (76%) Query: 9 MMLQEAAALIQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLAR 68 M Q L + ++ N+ +VIVGK +LL AL+ +GHVLLEDVPGTGKT+LAK+LA+ Sbjct: 1 MSFQSINQLAERLKSNIGQVIVGKESVTELLFIALITSGHVLLEDVPGTGKTLLAKSLAQ 60 Query: 69 SLDCSFKRIQFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSS 128 SL F+R+QFTPDLLPSDLSGI +YNQK G F+FRPGP+F+++LLADEINRATPRTQSS Sbjct: 61 SLKLQFRRVQFTPDLLPSDLSGIQYYNQKEGGFEFRPGPLFTNLLLADEINRATPRTQSS 120 Query: 129 LLECMEERQITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFE 188 LLECMEERQI++DG T L+ PF+VIATQNPV+ QGTFPLPEAQLDRFL +I GYPT E Sbjct: 121 LLECMEERQISVDGETKRLDKPFMVIATQNPVEHQGTFPLPEAQLDRFLFKIQMGYPTTE 180 Query: 189 EGVHILQRFRENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSV 248 E + IL+RF +PL AVA+ DI E Q+ A V + D++L Y++ ++E TR + Sbjct: 181 EALQILKRFNNADPLSHLDAVAAASDIAEAQRHYAEVRIEDEVLYYLLQLIERTRTRDDI 240 Query: 249 KLGASPRAGFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQ 296 +G SPR ALLRA+Q A++R RDYV PDD+KA+A PVLAHRL L+ Sbjct: 241 LVGVSPRGSQALLRASQVHAILRGRDYVTPDDVKAMAKPVLAHRLSLR 288 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,710,110,244 Number of extensions: 68089911 Number of successful extensions: 225280 Number of sequences better than 1.0e-05: 1824 Number of HSP's gapped: 223981 Number of HSP's successfully gapped: 1824 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)