BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0020.p
         (135 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9LFH2.1 B9LFH2_CHLSY Transcriptional regulator, MerR family           85   2e-15
C0D9H5.1 C0D9H5_9CLOT Putative uncharacterized protein                 85   3e-15
B8I4N6.1 B8I4N6_CLOCE Transcriptional regulator, MerR family           83   7e-15
Q2BL30.1 Q2BL30_9GAMM Putative transcriptional regulator               82   1e-14
A8MGU2.1 A8MGU2_ALKOO Transcriptional regulator, MerR family           82   2e-14

>B9LFH2.1 B9LFH2_CHLSY Transcriptional regulator, MerR family
          Length = 133

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 71/107 (66%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           GELA++  V+++T+R+YE+ G+LP P R  + YR Y+ + + R+ FI +A++ G +LREI
Sbjct: 5   GELARQTGVSVKTIRFYEQIGVLPPPPRMENNYRFYSPDMVDRLRFITHARSLGLSLREI 64

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLKR 113
              L  S+ G+    + + +++R++ A+D  IA  ++ R  L+DL++
Sbjct: 65  AAILALSDRGEPPCGEMLASLDRQIAAIDQRIADLQELRTALIDLRQ 111


>C0D9H5.1 C0D9H5_9CLOT Putative uncharacterized protein
          Length = 143

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 7/131 (5%)

Query: 4   YLRGELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTL 63
           YLRG+LAK A++N ETLRYYE +GL+P  QR ++GYR Y  ETL  + FI  AK  GFTL
Sbjct: 4   YLRGQLAKAARLNKETLRYYENNGLIPPAQRDSNGYRSYPAETLVLLEFISVAKAAGFTL 63

Query: 64  REITK---ALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLKRNLESAER 120
           +EI +   AL   E  K  +   I+   +K+  +D         R  L+D++ +L+S   
Sbjct: 64  KEIKELFSALHGEEFQKEQLESIIV---KKLADIDETQKALNLARERLLDMRAHLDSPLE 120

Query: 121 HPGVQETLQIL 131
            P V E  QIL
Sbjct: 121 CP-VFEACQIL 130


>B8I4N6.1 B8I4N6_CLOCE Transcriptional regulator, MerR family
          Length = 134

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 4  YLRGELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTL 63
          YLRGE+AK A +N+ETLRYYEK+ L+P P RT+ GYR+Y+E+ L  + FI++AK+ GFTL
Sbjct: 4  YLRGEIAKIAGINVETLRYYEKNKLIPIPNRTSKGYRLYSEDILIILSFIKSAKSAGFTL 63

Query: 64 REI 66
           +I
Sbjct: 64 EQI 66


>Q2BL30.1 Q2BL30_9GAMM Putative transcriptional regulator
          Length = 132

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 61/97 (62%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           G++AK++ +++ET+RYYEK GL+P PQR  SGYRVY +  L R+ FIQ  K+ GF+L+EI
Sbjct: 7   GQVAKQSDISVETVRYYEKRGLIPAPQRLDSGYRVYPQSILQRLHFIQRCKDLGFSLQEI 66

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREK 103
            + L    D   S       +E K+  V  +I + +K
Sbjct: 67  GELLNLQTDPATSSALVKEQVENKIQLVKQKIGELQK 103


>A8MGU2.1 A8MGU2_ALKOO Transcriptional regulator, MerR family
          Length = 143

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 7/109 (6%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           GE+AK++ VNIET+RYYE+ GL+ +P RT SGYR++  ET+ RI FI+ ++  GF+L EI
Sbjct: 7   GEVAKKSNVNIETIRYYERRGLISEPPRTESGYRIFPLETVERIKFIKRSQELGFSLDEI 66

Query: 67  TKALKKSED----GKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDL 111
            K L  +ED        I DF     +K+  ++L+I   +K +  L DL
Sbjct: 67  EKLLAITEDEEHFDSKEILDFAT---QKIREIELKIHDLQKIKTTLEDL 112


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 679,960,743
Number of extensions: 22675327
Number of successful extensions: 83228
Number of sequences better than 1.0e-05: 1649
Number of HSP's gapped: 84156
Number of HSP's successfully gapped: 1649
Length of query: 135
Length of database: 3,060,696,203
Length adjustment: 99
Effective length of query: 36
Effective length of database: 2,128,015,718
Effective search space: 76608565848
Effective search space used: 76608565848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)