BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0009.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D603.1 B1D603_9BACL Beta-galactosidase EC=3.2.1.23                  145   2e-33
B9JJS9.1 B9JJS9_AGRRK Beta-D-galactosidase protein                    114   4e-24
Q0B1V2.1 Q0B1V2_BURCM Beta-galactosidase EC=3.2.1.23                  112   8e-24
B1F8U4.1 B1F8U4_9BURK Beta-galactosidase EC=3.2.1.23                  112   1e-23
C3QIJ4.1 C3QIJ4_9BACE Glycoside hydrolase family 42                   111   2e-23

>B1D603.1 B1D603_9BACL Beta-galactosidase EC=3.2.1.23
          Length = 681

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 78/97 (80%)

Query: 1   MVETGFTIVRLAEFAWSIFEPEEGVFQFELFDKAIDLAHSHGLKVILGTPTATPPAWLTE 60
           M E   +++R+AEF+W++ EP+EGVF F  F + +DLAH +GL+VILGTPTATPPAWLT 
Sbjct: 33  MREMNISVIRMAEFSWAMLEPQEGVFDFTFFTRVMDLAHRYGLRVILGTPTATPPAWLTH 92

Query: 61  RYPEVLNVTNEGVTLQHGMRRHYNYSSPKYRELCAAI 97
           +YPEVLN T EG+ ++HGMRRHYNYSS KYREL   I
Sbjct: 93  KYPEVLNATKEGLLIKHGMRRHYNYSSAKYRELSQRI 129


>B9JJS9.1 B9JJS9_AGRRK Beta-D-galactosidase protein
          Length = 721

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 65/97 (67%)

Query: 1   MVETGFTIVRLAEFAWSIFEPEEGVFQFELFDKAIDLAHSHGLKVILGTPTATPPAWLTE 60
           M E GF +VRL EFAW IFEP+ G F F+LFD+AI +   HG+  I+ TPTATPP WLT 
Sbjct: 52  MAEAGFNVVRLGEFAWHIFEPKLGTFDFDLFDRAIAVLARHGISTIMCTPTATPPRWLTA 111

Query: 61  RYPEVLNVTNEGVTLQHGMRRHYNYSSPKYRELCAAI 97
            +PEVL V   G T+ HG R+H + +SP +RE    I
Sbjct: 112 AHPEVLRVDGNGRTMSHGSRQHADTASPVFREHSKRI 148


>Q0B1V2.1 Q0B1V2_BURCM Beta-galactosidase EC=3.2.1.23
          Length = 656

 Score =  112 bits (281), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 65/97 (67%)

Query: 1   MVETGFTIVRLAEFAWSIFEPEEGVFQFELFDKAIDLAHSHGLKVILGTPTATPPAWLTE 60
           M E G T VR+AEFAWS  EPE G + +   D+AID   S  LKVILGTPTA+PP WL +
Sbjct: 24  MAELGLTRVRIAEFAWSRMEPEPGRYDWAWLDEAIDTLASRQLKVILGTPTASPPKWLVD 83

Query: 61  RYPEVLNVTNEGVTLQHGMRRHYNYSSPKYRELCAAI 97
           R+PE+L +  +G   Q G RRHY+ +SP YRE C  I
Sbjct: 84  RHPEILPIGADGAVWQFGSRRHYDIASPVYREHCVRI 120


>B1F8U4.1 B1F8U4_9BURK Beta-galactosidase EC=3.2.1.23
          Length = 656

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 65/97 (67%)

Query: 1   MVETGFTIVRLAEFAWSIFEPEEGVFQFELFDKAIDLAHSHGLKVILGTPTATPPAWLTE 60
           M E G T VR+AEFAWS  EPE G + +   D+AID   S  LKV+LGTPTA+PP WL +
Sbjct: 24  MAELGLTRVRIAEFAWSRMEPEPGRYDWAWLDEAIDTLASRQLKVVLGTPTASPPKWLVD 83

Query: 61  RYPEVLNVTNEGVTLQHGMRRHYNYSSPKYRELCAAI 97
           R+PE+L +  +G   Q G RRHY+ +SP YRE C  I
Sbjct: 84  RHPEILPIGADGAVWQFGSRRHYDIASPVYREHCVRI 120


>C3QIJ4.1 C3QIJ4_9BACE Glycoside hydrolase family 42
          Length = 698

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 67/97 (69%)

Query: 1   MVETGFTIVRLAEFAWSIFEPEEGVFQFELFDKAIDLAHSHGLKVILGTPTATPPAWLTE 60
           M E G      AEFAW++ EPEEG + FE  D+A+ LA  +GLKVI+ TPT TPPAWL++
Sbjct: 50  MSEMGIKFTHFAEFAWAMMEPEEGKYDFEWLDRAVSLAEKYGLKVIMCTPTPTPPAWLSK 109

Query: 61  RYPEVLNVTNEGVTLQHGMRRHYNYSSPKYRELCAAI 97
           +YP++L   + GV++QHG R+H ++SS +YR     I
Sbjct: 110 KYPDILIQRDNGVSIQHGRRQHASWSSDRYRRYVENI 146


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 763,702,271
Number of extensions: 27829947
Number of successful extensions: 71755
Number of sequences better than 1.0e-05: 370
Number of HSP's gapped: 71748
Number of HSP's successfully gapped: 370
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)