BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0007.p
         (886 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K561.1 B3K561_9BACI Putative uncharacterized protein                586   e-165
B1DEC8.1 B1DEC8_9BACL Putative uncharacterized protein                119   1e-24

>B3K561.1 B3K561_9BACI Putative uncharacterized protein
          Length = 855

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 304/829 (36%), Positives = 479/829 (57%), Gaps = 34/829 (4%)

Query: 55  SIPLEAGVKATLEDVSIWSQSGGNILTYTLNYSNSGGSNANLSHYFSRVVTSGGSVIPGN 114
           S+ L + V A L+   +W Q+G +   +TL Y N G S A L  YF +VV  GGSV   N
Sbjct: 49  SVKLGSNVTAKLDHADVWQQNGSHAAVFTLTYKNGGKSAARLVSYFPKVVLPGGSVSAAN 108

Query: 115 PVTADAAKNKVVSKQTERVIYYVNLGKINSLKGLKVSVYVWDPKSKGYLRHAGAISLPAN 174
           P++ D AK KV   Q+  V YY      +SL G+K+ + VW+P+ KGYL+  G   +PAN
Sbjct: 109 PISKDLAKKKVEPGQSVSVTYYAKTDS-SSLAGMKLVMDVWNPQVKGYLQRVGTYRMPAN 167

Query: 175 YSSSAVSGQRQNVTMNNIPVSAASESLQIYKYGGKVFAKVGINFSNEGNKVLTDPGYTAY 234
           YS++  +G    + +   PV+  +ESL+I KY GKV AKVG+  +N G KV  D G+  +
Sbjct: 168 YSAAVPTGSSTKLKLGGTPVTVQAESLEIIKYDGKVIAKVGMYMTNHGGKVWNDRGFEPH 227

Query: 235 LMSASGTAFELALDNSLAGYKIQPQEKKTIYYVTEIPPYLKTDNMKVQYVQRDETLKFEL 294
           L++ASG +F L  +    G  +QP+EKK +YY+TE+P YLKT  ++  + + D+TLK  L
Sbjct: 228 LVTASGNSFPLRHEAEAEGVPVQPKEKKLVYYITEVPSYLKTAGLRFLWTENDDTLKLSL 287

Query: 295 PKFSYKLPAAVTPDLNVGKGAIKKIGINSNTIELQLTGANVYGEDAAGIWTFQFRLKNAG 354
           P  S+KLPAA  P  +V  G  KK+ I    ++ ++  +++      GIWT +   KN G
Sbjct: 288 PVASFKLPAATAPKWDVKAGEAKKLTIRGIPVDARIRQSSLRASGGQGIWTIEMAFKNKG 347

Query: 355 KQAVVLPTYDLSVRTAKGTTFPISSNGVSGASLKPMEEKVVQLTAQIPLEVEQNTLKLQM 414
           K++V +P Y+ +++ ++G+  P + +G +G +L+P EEK + +   +PL+++Q+ LKLQM
Sbjct: 348 KKSVEVPAYEFAIKASEGSFHPYTPDGKTGLTLRPGEEKTMVMEITLPLDLKQDRLKLQM 407

Query: 415 IESVSGNSSGNTPSAPAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSPSATAK--LS 472
           I +     +   P+ P +                                P++  +  L+
Sbjct: 408 IGASGTAGASKPPANPGESGS----------------------------EPTSEVQEPLT 439

Query: 473 IPVAYFAVPYTLRADTQKAMNYRITNQYGTFDYSLMSLQRFPWKNDDILIAKLNITNTQ- 531
           +P+AYFA+PY     +   + Y   +  G F Y+L S+QR PW++ D+++AKL + NTQ 
Sbjct: 440 LPIAYFAIPYQTERKSSIGVEYGAQSAKG-FAYTLESIQRLPWQDQDLIVAKLRLRNTQE 498

Query: 532 SVNLTLPDLKGALKLDNNDLSASTDLFMEKEASSIAPGKSAEVYVFSKIPYTTDFKSTRV 591
           S +L LP+LK  +  D     A  ++  E++ S IAPG S EVYV ++IPYT D +S R 
Sbjct: 499 SKSLPLPELKANVTADEKTGLAGPEVIAEEQGSLIAPGASTEVYVMARIPYTKDIRSLRF 558

Query: 592 NLYSVVKEENVPFLSLNTSSVTDAVYKVDRGGSYTIVGKGKNAKVQENKTVIYQGINSNI 651
            L++  +     FL++ TS +  ++  +++G  YT+   GK A+ QE +TVIY+G +S+I
Sbjct: 559 ELFTQQEAVKTSFLTMTTSGMMQSIGVLEKGKPYTVTAAGKRAEAQERRTVIYEGADSDI 618

Query: 652 VYTEMFLSSEEKRQSKMARLQAYFKTADGQLYETTPVQPDMAATPGGKQLVTFWAKLPKS 711
           VY+E  L+S E+R+ + A L+ YF++ DG++YE   +QP+ A  PG +Q + FWA++PK 
Sbjct: 619 VYSEFVLTSNEQRRVQAAVLKGYFQSTDGRIYEAETIQPEAALQPGSRQSIVFWARVPKG 678

Query: 712 VDASDVTLYLGPGINGNKFTEAGQESTGFINVSALELSPQYITPVNNLSKVTLYPYTLSV 771
             AS++ L LG  ++G K  E G+++TG + V  L L+P      + L+++  YPY++SV
Sbjct: 679 A-ASELGLALGTAMSGGKLAETGKDATGVLGVKKLMLNPARPAASSGLTQLDWYPYSVSV 737

Query: 772 LNSEGRNARGSDTINITMNYSLLRDISYDIGSFDHKLVLKMTDPYGQSQEKSLTLGTDLI 831
             + G    GS TI++     + R  S        KL+L + D  GQ+QE++LT GTD+ 
Sbjct: 738 TKAAGHLQEGSSTISLNATLDVKRSESIAAADSGRKLILIIKDSLGQTQERTLTPGTDIQ 797

Query: 832 EGDNNRYSMSFSSETYKKLAGGIYSIRLYDEFQGERIELANQAYTLKIE 880
                  SM  + E YKKL GG +++ L DEFQ ERI L +Q+Y L  +
Sbjct: 798 VPGTRSISMELTDEQYKKLRGGWFNLTLVDEFQNERITLGSQSYNLTFQ 846


>B1DEC8.1 B1DEC8_9BACL Putative uncharacterized protein
          Length = 698

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/544 (22%), Positives = 226/544 (41%), Gaps = 54/544 (9%)

Query: 231 YTAYLMSASGTAFELALDNSLAGYKIQPQEKKTIYYVTEIPPYLKTDNMKVQYVQRDETL 290
           Y A L + SGT + L L +      + P+   T+ + + +   +  D + + +V+ D ++
Sbjct: 85  YWARLKTKSGTKYTLTLLDKANKKTVSPKSSTTLTFYSAVGSKVTMDQLILNFVKFDFSV 144

Query: 291 K-FELPKFSYKLPAAVTPDLNVGKGAIKKIGINSNTIELQLTGANVYGEDAAGIWTFQFR 349
             +E     +  PA  T D+  G     K+G +S  + +  T      ++ +   T+  R
Sbjct: 145 SGYEKTIGQFTFPAGYTNDVKAGGYRAVKVGGSSVNMRVNKTTVGKTVDNYSVNLTYVAR 204

Query: 350 LKNAGKQAVVLPTYDLSVRTAKGT-TFPISSNGVSGASLKPMEEKVVQLTAQIPLEVEQN 408
             N  +  V LP Y+  ++T+ G     +         L P     ++LT  IP  V  +
Sbjct: 205 --NTSQFGVNLPEYNYYIKTSVGLYKLTLKDTADQNLLLAPSVLNTIELTGSIPNTVSTS 262

Query: 409 TLKLQMIESVSGNSSGNTPSAPAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSPSAT 468
             K  + + ++  ++ NT                                          
Sbjct: 263 GWKFIVTQKIT--AADNT------------------------------------------ 278

Query: 469 AKLSIPVAYFAVPYTLRADTQKAMNYRITNQYGTFDYSLMSLQRFPWKNDDILIAKLNIT 528
            ++ +PV  F  P ++   +        T+  GT++  L S+QR PW N+D ++AKL + 
Sbjct: 279 -QVELPVVSFVTPVSVGNTSTGTAKQTFTDANGTYNVELQSVQRMPWNNEDNVVAKLAVK 337

Query: 529 NTQSVNLTLPDLKGALKLDNNDLSASTDLFMEKEASSIAPGKSAEVYVFSKIPYTTDFKS 588
           N+ +  L LPDL G + LD++ ++ ++         SIAPG +  +    K+    ++K 
Sbjct: 338 NSGTTYLPLPDLTGTMLLDDS-ITLTSQTVKNAGDISIAPGATTTMTFIGKLQTGYNWKK 396

Query: 589 TRVNLYSVVKEENVPFLSLNTSSVTDAVYKVDRGGSYTIVGKGKNAKVQENKTVIYQGIN 648
            ++ L      + V    +  S VT  +Y V  G  YT    G    V+      Y G  
Sbjct: 397 FKLQLNEKSGNDTVDVAEVTKSDVT-PIYSVSSGSVYTQKSIGSEMSVKVTDVRTYSGDT 455

Query: 649 SNIVYTEMFLSSEEKRQSKMARLQAYFKTADGQLYETTPVQPDMAATPGGKQLVTFWAKL 708
           +++    + +++ + R   M +   YFK+A+G  Y+ T V+     +PG K+ V  + +L
Sbjct: 456 NDLYAVYLDVTNNQSRSKTMPQWSGYFKSANGNYYDVTFVKTAATISPGYKEQVIAYTQL 515

Query: 709 PKSVDASDVTLYLGPGINGNKFTE-AGQESTGFINVSALELSPQYITPVNNLSKVTLYPY 767
           P +V    + L +G  I+ N   + A    TG+I      L  +  T  N+   + + PY
Sbjct: 516 PSNVSREGLQLLMGEAIDTNGLLKGATGNPTGYIRGVLFGLPAE--TATNSNKGIKIGPY 573

Query: 768 TLSV 771
           T+ +
Sbjct: 574 TVDL 577


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 4,737,082,706
Number of extensions: 190887635
Number of successful extensions: 371458
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 371447
Number of HSP's successfully gapped: 4
Length of query: 886
Length of database: 3,060,696,203
Length adjustment: 145
Effective length of query: 741
Effective length of database: 1,694,649,028
Effective search space: 1255734929748
Effective search space used: 1255734929748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 136 (57.0 bits)