BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0006.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K562.1 B3K562_9BACI ABC transporter related 336 1e-90 C0ZGI9.1 C0ZGI9_BREBN Probable ABC transporter ATP binding protein 220 8e-56 B9MLR1.1 B9MLR1_ANATD ABC transporter related 217 8e-55 B2A0S1.1 B2A0S1_NATTJ ABC transporter related 211 3e-53 B1RNA4.1 B1RNA4_CLOPE ABC transporter, ATP-binding protein 209 1e-52 >B3K562.1 B3K562_9BACI ABC transporter related Length = 255 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/245 (67%), Positives = 193/245 (78%), Gaps = 9/245 (3%) Query: 11 MLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTEG 70 MLR+EN+SH+FK+G+EV VLHNI FEV +G+M+ALLGSSGSGKST+LNLMAGLMKPTEG Sbjct: 1 MLRLENVSHSFKNGNEVLKVLHNIQFEVQKGEMIALLGSSGSGKSTLLNLMAGLMKPTEG 60 Query: 71 HIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRKK 130 HIYIADQDIVK GENKLAVFRRK+IGFIFQAYELI +LTVRENVELPLVFQSVSPS R+K Sbjct: 61 HIYIADQDIVKYGENKLAVFRRKHIGFIFQAYELIPTLTVRENVELPLVFQSVSPSKRRK 120 Query: 131 KSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXXX 190 K++ LLE GI DK+ ++PSQLSGGQQQRVSIARSLITEPS+IFADEPTGN Sbjct: 121 KAMELLEMTGIGDKASLYPSQLSGGQQQRVSIARSLITEPSVIFADEPTGNLDTKTEEEI 180 Query: 191 XXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMITE---------KRGTAESEP 241 N+ MKTTF++VTHE EVA M++ LRDG+++ +RG + P Sbjct: 181 IRIMMSLNESMKTTFVIVTHEMEVAAQMKKTIMLRDGYLVQPENYATSTGGQRGPSAPSP 240 Query: 242 AEGVP 246 GVP Sbjct: 241 LSGVP 245 >C0ZGI9.1 C0ZGI9_BREBN Probable ABC transporter ATP binding protein Length = 233 Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 150/222 (67%) Query: 12 LRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTEGH 71 L V ++H++ +G PVL++I+ ++QG+ VAL GSSGSGKST+LNL+AGL KP EG Sbjct: 8 LTVTGVNHSYGTGKIKVPVLYDINLHINQGEFVALCGSSGSGKSTLLNLLAGLTKPEEGS 67 Query: 72 IYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRKKK 131 + ++ +I EN+L +FRRK++GFIFQ+Y L+ +LT ENVELPL+F S R+ K Sbjct: 68 VMVSGAEISSYNENELCMFRRKSMGFIFQSYNLLPNLTALENVELPLIFAGESKKKRRAK 127 Query: 132 SLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXXXX 191 + +L VG+ + + P++LSGGQQQRVSIAR+L+ +P II ADEPTGN Sbjct: 128 ATEILHRVGLEGRIDHRPNELSGGQQQRVSIARALVNQPGIILADEPTGNLDSKTEQEIL 187 Query: 192 XXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMITEK 233 NK+ TTFI+VTHE EVAE R+ L+DG ++ ++ Sbjct: 188 LLMREMNKENGTTFIIVTHEQEVAEQSDRVIYLQDGRVVQKR 229 >B9MLR1.1 B9MLR1_ANATD ABC transporter related Length = 237 Score = 217 bits (552), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 102/220 (46%), Positives = 148/220 (67%) Query: 11 MLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTEG 70 +++VEN+ +FK G+ VL IS E++QG+ VA++G SGSGK+T+LN++ GL++P+EG Sbjct: 16 LIKVENVKKSFKIGTNSVEVLRGISLEIYQGEFVAIVGESGSGKTTLLNIIGGLLRPSEG 75 Query: 71 HIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRKK 130 + IA +DI M EN+LA+FRR+NIGF+FQ+Y LI T ENVE+PL+F+ +S R++ Sbjct: 76 SVVIASKDITAMSENQLAIFRRENIGFVFQSYNLIPHFTAVENVEIPLMFKGISKKKRRE 135 Query: 131 KSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXXX 190 + +LE VG+ D+ P++LSGGQQQRV+IAR+L+T P II ADEPTGN Sbjct: 136 MAAFMLEKVGLKDRLFHKPAELSGGQQQRVAIARALVTSPKIILADEPTGNLDSKNGQEI 195 Query: 191 XXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMI 230 NK T +VVTH V++ R+ + DG +I Sbjct: 196 LDLMLQLNKNENITLVVVTHSQVVSKTASRVIKIADGLII 235 >B2A0S1.1 B2A0S1_NATTJ ABC transporter related Length = 229 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 148/223 (66%), Gaps = 1/223 (0%) Query: 11 MLRVENISHTFKSGSEVT-PVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTE 69 M++V ++SHTF G+ VL+NI+FE+ QG + A++G SGSGKST+LNL++G +KP Sbjct: 1 MIQVSDLSHTFPVGNNTGFTVLNNINFEIEQGKIAAIMGKSGSGKSTLLNLLSGYLKPRT 60 Query: 70 GHIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRK 129 G I + D+D+ EN+ A FR N+GF+FQ+Y+LI+S+TV ENV++PL+ + +SP R Sbjct: 61 GRIVLNDKDVTGFNENEWAKFRLNNLGFVFQSYQLISSMTVFENVQMPLMVKGISPGRRT 120 Query: 130 KKSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXX 189 + +LE VG+ +E +P QLSGGQQQR S+AR+LI P I+ ADEPTG+ Sbjct: 121 ELVFEMLEKVGLYSHTEFYPDQLSGGQQQRTSVARALINNPEILLADEPTGSLDSYNEKL 180 Query: 190 XXXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMITE 232 N ++ T ++VTH+ EVAE I ++DGH+I + Sbjct: 181 LLELIYQLNDELGITVLLVTHDKEVAEKSHEIIRVKDGHIIEQ 223 >B1RNA4.1 B1RNA4_CLOPE ABC transporter, ATP-binding protein Length = 221 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 141/218 (64%) Query: 10 LMLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTE 69 ++++ ++I TFK G +L IS E+++G+ A++G SGSGKST LN++ G+M E Sbjct: 1 MIIQCKDIKKTFKVGDTSVEILKGISLEINKGEFTAIIGESGSGKSTFLNILGGIMPCDE 60 Query: 70 GHIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRK 129 G I I + I + EN+LA+FRRKN+GFIFQ+Y L+ LT ENVE+PL+F VS R Sbjct: 61 GEIVINEHHIEGLNENELALFRRKNMGFIFQSYNLMPQLTALENVEMPLIFSGVSKKERI 120 Query: 130 KKSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXX 189 +++ ++LE VG+ D+ PS+LSGGQQQRVSIAR+LI PS+I ADEPTGN Sbjct: 121 ERAKSMLEKVGLADRMNHKPSELSGGQQQRVSIARALINNPSVILADEPTGNLDSKTTIE 180 Query: 190 XXXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDG 227 NK TTF+VVTH V E+ R+ + DG Sbjct: 181 ILDLLKDLNKNFNTTFVVVTHSQVVYEYADRVIKMEDG 218 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,290,468,507 Number of extensions: 46946692 Number of successful extensions: 456236 Number of sequences better than 1.0e-05: 90414 Number of HSP's gapped: 346030 Number of HSP's successfully gapped: 96568 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)