BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0005.p (462 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K563.1 B3K563_9BACI Putative uncharacterized protein 335 5e-90 A6BKV2.1 A6BKV2_9FIRM Putative uncharacterized protein 138 1e-30 B0NFL0.1 B0NFL0_EUBSP Putative uncharacterized protein 130 2e-28 C0C098.1 C0C098_9CLOT Putative uncharacterized protein 128 2e-27 C2KVE9.1 C2KVE9_9FIRM ABC superfamily ATP binding cassette trans... 119 6e-25 >B3K563.1 B3K563_9BACI Putative uncharacterized protein Length = 431 Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 187/445 (42%), Positives = 262/445 (58%), Gaps = 15/445 (3%) Query: 19 VVTGLCMLGLSIGCSAIVVALSLGDSVQSYVSREVTAQFKMDEITVMPNEGVSQGGGPTA 78 +VT LCM G+SIGC+AI+VA+S+G+ QSY+ E+ K+DEITV P S GG Sbjct: 1 MVTALCMTGISIGCAAIIVAISIGNGAQSYLETEIIGGMKLDEITVTPQ---STGGPGEG 57 Query: 79 TKTGANSNVGKLTEQKLDIIRGLKHVTAAAPFQDAGYFELLTTDNKISS-FNLVVTDLSL 137 A G LT+ K+ +I+G HV + + GYF +++DN I N+V DLS Sbjct: 58 GGQSAGGERGLLTDDKVQVIQGFNHVKSVVATKQLGYFRTISSDNLIHEGINVVAVDLSK 117 Query: 138 LTKYDFSFQQGVPSKQIGSVVLNYGATIGLMDVETQKKLMESLSSNSYDPEVMRQYDELS 197 L + F++G P +QIG+VVLNYGAT G D ET ++L ++S+ +P++ ++ + Sbjct: 118 LKEQGNRFKEGGPLEQIGAVVLNYGATTGWKDAETSERLNNMMNSDPNNPQLWEEFQKYE 177 Query: 198 RMPSNLYRQQVQFRHSDYDNSTGGVKSYLSSQLQVAGILKKSDGMSADQAMYDKKIYVSQ 257 S + + VQ D D K LS QL V G+L G A A YD++ Y+S Sbjct: 178 STVSEMIGKNVQLEQMDND------KKLLSPQLYVGGVLDVPKGRDAQFAFYDRQAYISF 231 Query: 258 ETYDRLKDEFNIKPDKPETGQTYNQALIRVDNQDNLPQVETLIKKLTLNTSNNLYQLEQL 317 +T D L D N++ + Y+ ++V++ + +E LI KL LN S+NL +Q+ Sbjct: 232 DTADWLTDSLNLQKGPASKQRIYDNLTVKVEDLQYIKPLEDLISKLALNASDNLAMRDQV 291 Query: 318 KSQFAMFKMVALGVGGFXXXXXXXXXXVAMTMSTHQRRRQIGIMKVLGSNMRQIRTMFIM 377 SQ FK +ALGVG F VAMTMSTHQRRRQIGIMKVLG+NM QIR MFI+ Sbjct: 292 ASQLDTFKAIALGVGVFILLLASISIIVAMTMSTHQRRRQIGIMKVLGANMPQIRNMFIV 351 Query: 378 EAAXXXXXXXXXXXXXSYLIVEGINKLVSSSGQMTMGTGESLVVSIPLNSIPVGIVFAVL 437 EA+ +YLI++G+N + +S M+ L +++ ++P+GI FAV+ Sbjct: 352 EASLLGLLGGLLGIVFAYLIIKGLNSFIMASAGMS-----GLQIAVTAETLPIGIAFAVM 406 Query: 438 TGVLSGIYPAISAARTNALTAIKRD 462 TG+ SGIYPAISAARTNAL AIKRD Sbjct: 407 TGIFSGIYPAISAARTNALLAIKRD 431 >A6BKV2.1 A6BKV2_9FIRM Putative uncharacterized protein Length = 467 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 133/488 (27%), Positives = 219/488 (44%), Gaps = 65/488 (13%) Query: 14 IKRRKVVTGLCMLGLSIGCSAIVVALSLGDSVQSYVSREVTAQFKMDEITVMPNEGVSQG 73 ++RRK+ T L +LG+ IG ++IVV +SLG +Q + +EV + ITV G Sbjct: 6 LRRRKLRTFLTVLGVLIGTASIVVMISLGLGMQQSLYKEVEQSGGLTSITV---TGSDNS 62 Query: 74 GGPTATKTGANSNVGK-LTEQKLDIIRGLKHVTAAAPFQDA----------GYFELL-TT 121 G T G+ K + +Q ++ I + HV AAP + Y +L T Sbjct: 63 DGMTTESMGSGQETEKRIDDQLVEKISKMDHVKLAAPIYETSVILLKGSYMAYVQLQGMT 122 Query: 122 DNKISSFNLVVTDLSLLTKYDFSFQQGVPSKQIGSVVLNYGATIGLMDVETQKKLMESLS 181 + S N+ + D +L P G + L +G + E+ S Sbjct: 123 PEGLKSLNMDLGDGTL------------PKTGTGHLELIFGNGV-------ITDFYETGS 163 Query: 182 SNSYD-----PEVMRQYDELSRMP-SNLYRQQVQFRHSDYDNSTGGVKSYLSSQ------ 229 N Y P + D L + + Y D + T G S S Sbjct: 164 GNGYYDTGKVPNINLMKDSLFMITDTENYNSDSSTAFGDSTDGTAGAGSQSDSGTGQTKP 223 Query: 230 -----LQVAGILKKSDGMSADQAMYDKKIYVSQETYDRL-KDEF--NIKPDKPET----- 276 ++ +G++ + G+ YD ++ ET +L + E+ + P +P+T Sbjct: 224 VQKYVVRASGVI--NGGLDDYSNNYDS-VFCDLETLKQLLRKEYAGKVIPGQPKTKAGKA 280 Query: 277 --GQTYNQALIRVDNQDNLPQVETLIKKLTLNTSNNLYQLEQLKSQFAMFKMVALGVGGF 334 G Y ++ D+ D++ +V +I+ + N N L+ +KSQFA+ + V G+G Sbjct: 281 LKGFYYTSLKVKADDIDHVNEVADVIRNMGYNVETNAEYLDSMKSQFAIVQAVLGGIGAV 340 Query: 335 XXXXXXXXXXVAMTMSTHQRRRQIGIMKVLGSNMRQIRTMFIMEAAXXXXXXXXXXXXXS 394 M MS ++R ++IG+MKVLG ++R IR MF++EAA S Sbjct: 341 SLLVAAIGIANTMMMSIYERTKEIGVMKVLGCSLRNIREMFLLEAAFIGLLGGIAGNILS 400 Query: 395 YLIVEGINKLVSSSGQMTMGTGESLVVSIPLNSIPVGIVFAVLTGVLSGIYPAISAARTN 454 +++ IN +V SSG M+MGT +S + IP + + +VFAVL GVL+G +PA A + + Sbjct: 401 FVMSAAINIIVGSSGAMSMGT-DSTISYIPWWLVLMSMVFAVLVGVLAGYFPAKRAMKLS 459 Query: 455 ALTAIKRD 462 L AI+ + Sbjct: 460 PLAAIRNE 467 >B0NFL0.1 B0NFL0_EUBSP Putative uncharacterized protein Length = 470 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 133/492 (27%), Positives = 226/492 (45%), Gaps = 58/492 (11%) Query: 4 LDVTRLAWGQIKRRKVVTGLCMLGLSIGCSAIVVALSLGDSVQSYVSREVTAQFKMDEIT 63 +D+ R++ +KRRK+ T L +LG+ IG ++IVV +SLG +Q + REV + I Sbjct: 4 MDLLRMSTSNLKRRKLRTFLTVLGVVIGTASIVVMISLGLGMQQSLYREVEQSGGLTTIK 63 Query: 64 VMPNEGVSQGGGPTATKTGANS--NVGKLTEQKLDIIRGLKHVTAAAPFQD--------- 112 V G G + +G + + +Q L + L+HV A+P + Sbjct: 64 V---SGAQAGNSMMYSSSGKEEEQSTKYINDQLLARLSKLEHVALASPVYELPVVLLKGG 120 Query: 113 -AGYFELL-TTDNKISSFNLVVTDLSLLTKYDFSFQQGVPSKQIGSVVLNYGATIGLMDV 170 GY +LL TT + + N+ + + SL P G + L YG G++ + Sbjct: 121 YEGYGQLLATTPEAMEARNINLAEGSL------------PKPNSGHLDLVYGN--GVLTM 166 Query: 171 ETQKKLMESLSSNSYDPEVMRQYDELSRM--PSNLYRQQVQFRHSDYDNSTGGVKSYLSS 228 +K + P++ D + + Y Q Q + D ++G S Sbjct: 167 FNEKGSGKGYYETGRLPDIDLAKDSVFLILDQEGYYNQSSQ----NGDEASGNSDSGDGK 222 Query: 229 QLQVAGILK---KSDGMSAD-----QAMYDKKIYVSQETYDR-LKDEFNIK--PDKPET- 276 Q Q I K K+ G+ A A Y I+ +T + LK EFN + P +P T Sbjct: 223 QAQPKAIAKHVAKASGIVAGGPDEYNANY-YNIFCDLDTLKQILKKEFNARVIPGQPTTK 281 Query: 277 -GQTYNQ-----ALIRVDNQDNLPQVETLIKKLTLNTSNNLYQLEQLKSQFAMFKMVALG 330 G+ Y + A ++VD+ DN+ V ++++++ N N L+ +K QFA+ + V G Sbjct: 282 SGKPYKEFCYSYAQLKVDDIDNVDSVASIVREMGYNVETNAEYLDSMKGQFAIVQAVLGG 341 Query: 331 VGGFXXXXXXXXXXVAMTMSTHQRRRQIGIMKVLGSNMRQIRTMFIMEAAXXXXXXXXXX 390 +G M MS ++R ++IG++KVLG +++ I+ MF++EAA Sbjct: 342 IGAVSLLVAAIGIANTMMMSIYERTKEIGVIKVLGCSLKNIKQMFLVEAAFIGLIGGIIG 401 Query: 391 XXXSYLIVEGINKLVSSSGQMTMGTGESLVVSIPLNSIPVGIVFAVLTGVLSGIYPAISA 450 S+LI IN L + M + + + IP + + + FA+L GV +G +PA+ A Sbjct: 402 NILSFLISFVINFLTGNGAAMGI---DGNISYIPWWLVILSMGFAMLVGVAAGYFPALRA 458 Query: 451 ARTNALTAIKRD 462 R + L AI+ + Sbjct: 459 MRLSPLAAIRSE 470 >C0C098.1 C0C098_9CLOT Putative uncharacterized protein Length = 469 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 125/478 (26%), Positives = 222/478 (46%), Gaps = 28/478 (5%) Query: 4 LDVTRLAWGQIKRRKVVTGLCMLGLSIGCSAIVVALSLGDSVQSYVSREVTAQFKMDEIT 63 +D+ R++ +KRRK+ T L +LG+ IG ++IVV +SLG +Q + +EV + IT Sbjct: 1 MDLLRMSGSNLKRRKLRTFLTVLGVVIGTASIVVMISLGLGMQQSLYKEVEQSGGLTTIT 60 Query: 64 VMPNEGVSQGGGPTATKTGANSNVGKLTEQKLDIIRGLKHVTAAAPFQDAGYFELLTTDN 123 V + Q + + ++ + +T++ + + L HVT AAP + ++ Sbjct: 61 VTGKD-AGQSMMAYSGQENSDESTQYVTDRTIKQLSELGHVTTAAPVYE---MSVIMLKG 116 Query: 124 KISSF-NLVVTDLSLLTKYDFSFQQGVPSKQIGSVV-LNYGATIGLMDVETQKKLMESLS 181 K ++ LV L + +G KQ GS + + YG T+ + +++ S Sbjct: 117 KYEAYIQLVGMTPEGLKAKNIELGEGSLPKQGGSQLDILYGNTV--ITNFSERNSQSSYW 174 Query: 182 SNSYDPEVMRQYDELSRM--PSNLYRQQVQ-FRHSDYD-NSTGGVKSYLSSQLQVAGILK 237 PE+ D + + +R Q Q F +SD N +GG SQ + Sbjct: 175 DTGELPEIDLMKDSVFLILDQDGYFRSQEQSFGNSDSGGNESGGPGESQPSQPVKKHAVT 234 Query: 238 KSDGMSADQAMYDKKIY---VSQETYDR-LKDEFN---------IKPDKPETGQTYNQAL 284 S ++ Y+ Y ET + LK +F+ K KP Y A Sbjct: 235 ASGIVAGGPDDYNANAYSAFCDLETLKKVLKKDFSGRTVPGQPTTKSGKPYKEFCYTSAQ 294 Query: 285 IRVDNQDNLPQVETLIKKLTLNTSNNLYQLEQLKSQFAMFKMVALGVGGFXXXXXXXXXX 344 ++VD+ D + +V ++I+++ NT N L+ +KSQFA+ + V G+G Sbjct: 295 VKVDDIDKVEEVSSIIREMGYNTQTNAEYLDSMKSQFAIVQAVLGGIGAVSLLVAAIGIA 354 Query: 345 VAMTMSTHQRRRQIGIMKVLGSNMRQIRTMFIMEAAXXXXXXXXXXXXXSYLIVEGINKL 404 M MS ++R ++IG++KVLG +++ I+ MF++EAA S+++ IN L Sbjct: 355 NTMMMSIYERTKEIGVIKVLGCSLKNIKQMFLLEAAFIGLIGGLVGNILSFIMSGIINFL 414 Query: 405 VSSSGQMTMGTGESLVVSIPLNSIPVGIVFAVLTGVLSGIYPAISAARTNALTAIKRD 462 + M + + + IP + + + FAV GV +G +P++ A R + L AI+ + Sbjct: 415 TGNGSAMGI---DGNISYIPWWLVLLSMGFAVFVGVAAGYFPSLRAMRLSPLAAIRSE 469 >C2KVE9.1 C2KVE9_9FIRM ABC superfamily ATP binding cassette transporter protein Length = 453 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 126/479 (26%), Positives = 208/479 (43%), Gaps = 43/479 (8%) Query: 1 VRILDVTRLAWGQIKRRKVVTGLCMLGLSIGCSAIVVALSLGDSVQSYVSREVTAQFKMD 60 ++++D+ LA +KRRK T L +LG+ IG S+IVV +SLG + + + + Sbjct: 1 MKVVDLFLLAINNLKRRKFRTVLTVLGVVIGTSSIVVMVSLGLGMSESLLQSFKNSGSLT 60 Query: 61 EITVMPNEGVSQGGGPTATKTGANSNVGKLTEQKLDIIRGLKHVTAAAPFQDAGYFELLT 120 +I + S GG A TG + V +LT+ L + + HVT +P + +T Sbjct: 61 KINI------SNYGG-MADNTGKKAAV-QLTDDSLKQLETIPHVTGVSPSLEVP----IT 108 Query: 121 TDNKISSFNLVVTDLSLLTKYDFSFQQGV-PSKQIGSVVLNYGATIGLMDVETQKKLMES 179 N + +S ++G P + L YG T+G K +S Sbjct: 109 AKFGAYEANYSIRGVSQAYFSQMKLKEGTTPPAGDSELTLVYGNTVG-SSFHKVKNWQDS 167 Query: 180 LSSNSYDPEVMRQYDELS-RMPSNLYRQQVQFRHSDYDNSTGGVKSYLSSQLQVAGILKK 238 +N + + E P+ + + Q + ++ K Y+ L+ AGI++ Sbjct: 168 YVANPMKDTIFYIFPEKQVSNPNGVSKDQPETANNKPQ------KKYI---LKTAGIMEG 218 Query: 239 SDGMSADQAMYD-----------KKIYVSQETYDRLKDEFNIKPDKPETGQTYNQALIRV 287 + ++++MY KKIY D + D K KP Y++A + V Sbjct: 219 TAEDYSEESMYAYADIDTLKAFLKKIYKK----DLVPDPKTGKNGKPLRYYVYDEAYVFV 274 Query: 288 DNQDNLPQVETLIKKLTLNTSNNLYQLEQLKSQFAMFKMVALGVGGFXXXXXXXXXXVAM 347 D+ N+ +V+ I + + +NL L+Q + M +MV G+G M Sbjct: 275 DDMKNVSEVQKTITDMGYSAYSNLEWLKQSQDSINMVQMVLGGIGAVSLLVAAIGIMNTM 334 Query: 348 TMSTHQRRRQIGIMKVLGSNMRQIRTMFIMEAAXXXXXXXXXXXXXSYLIVEGINKLVSS 407 MS +R ++IG+MKVLG +M IR MF+ E+A SY I IN L Sbjct: 335 MMSIFERTKEIGVMKVLGCDMGDIRNMFLTESALIGFFGGLIGIALSYGISAIINSLTGG 394 Query: 408 SGQMTM----GTGESLVVSIPLNSIPVGIVFAVLTGVLSGIYPAISAARTNALTAIKRD 462 G + GE + IP I FA+L G+LSG +P++ A + + L AI+ + Sbjct: 395 GGSDVLSGFTNGGEGQLSLIPAWLALFAIGFAMLVGMLSGYFPSVRAMKLSPLAAIRNE 453 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,326,666,519 Number of extensions: 88684141 Number of successful extensions: 276433 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 276997 Number of HSP's successfully gapped: 140 Length of query: 462 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 323 Effective length of database: 1,751,175,118 Effective search space: 565629563114 Effective search space used: 565629563114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)