BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0003.p (449 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIY8.1 B3KIY8_9BACI Glycoside hydrolase family 3 domain protein 389 e-106 Q892E4.1 Q892E4_CLOTE Putative anhydromuramoyl-peptide exo-beta-... 385 e-105 A3I7T1.1 A3I7T1_9BACI Beta-hexosaminidase 381 e-104 A8MJC3.1 A8MJC3_ALKOO Glycoside hydrolase family 3 domain protein 380 e-103 B1HX00.1 B1HX00_LYSSC Hypothetical lipoprotein ybbD 379 e-103 >B3KIY8.1 B3KIY8_9BACI Glycoside hydrolase family 3 domain protein Length = 439 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/362 (52%), Positives = 261/362 (72%) Query: 80 PSQEVDALTRKIAGMTLEEKIGQMLLVGIDGTTLEAEAKRVITDDKVGGIILYADNIKDL 139 P++ D + + MT+EEKIGQ++LVG++GT ++ +++++ D VGG IL+ DNI+ L Sbjct: 71 PNEIEDEIAELMNDMTVEEKIGQLVLVGLEGTAIDETSRKLVKDHHVGGFILFKDNIESL 130 Query: 140 KGMVNLINALKKSNTTNPVPLFMSVDQEGGKVSRMPKEYASIPSNGKVGNSSDSDAAGTM 199 + V L+N LK++N NPVPL++S+D+EGG+V+R P+EY +PS+GKVG+ D + Sbjct: 131 EQSVKLLNDLKEANAANPVPLWLSIDEEGGRVTRFPEEYVKLPSSGKVGSKGDLALTKRV 190 Query: 200 GKLLAREVRAGGFNMNFAPVLDINSNPDNPVIGDRSFGSTASIVSKLGIAEMKGIESEGV 259 G L+A++V G NM FAPVLDI+SNP+NPVIGDRSFG+TA V+K GIA MKGI+ +GV Sbjct: 191 GGLIAQKVAGLGLNMVFAPVLDIHSNPNNPVIGDRSFGTTAETVTKHGIASMKGIQEKGV 250 Query: 260 VPVVKHFPGHGDTSVDSHLELPVVNKTAPQLAKLEWLPFQAAFKEKADAVMVAHILFPHI 319 VPVVKHFPGHGDTSVDSHL LPVV +L ++E +PFQ A E AD VMVAH+L I Sbjct: 251 VPVVKHFPGHGDTSVDSHLGLPVVEHDLKRLHEMELVPFQQAINEGADVVMVAHLLMKSI 310 Query: 320 DPDYPASLSRIIIGDQLRGDMGYQGVVITDDLTMGAIMKHFDLGAAAVETVDAGSDILLI 379 DPD P+S S+ +I D LR +MG++GVVITDD+TMGAI D+G A+V++V AGS+++LI Sbjct: 311 DPDTPSSYSKPVINDLLREEMGFKGVVITDDMTMGAISGSTDVGEASVKSVVAGSNMVLI 370 Query: 380 AHGYENEQLARKALLQSVRGGTLDESRINESVYRILALKQKYRLTDKPVPVPDLAELNNE 439 H Y E+ +AL ++VR G + E +N+ V L LK KY L+D PV PD+ LN Sbjct: 371 GHEYALEEAVIQALTKAVRSGVIPEEMLNDRVRATLELKHKYELSDDPVKAPDIKPLNQH 430 Query: 440 IK 441 K Sbjct: 431 TK 432 >Q892E4.1 Q892E4_CLOTE Putative anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase EC=3.2.1.- Length = 405 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 174/357 (48%), Positives = 260/357 (72%) Query: 85 DALTRKIAGMTLEEKIGQMLLVGIDGTTLEAEAKRVITDDKVGGIILYADNIKDLKGMVN 144 +++ K+ M+L+EKIGQ+L+VG DG + +I + VGG+IL+ +NI+ + + Sbjct: 46 NSMQVKLNSMSLDEKIGQLLIVGFDGYEANKNIESLIKKNYVGGVILFGNNIRSAEQTMK 105 Query: 145 LINALKKSNTTNPVPLFMSVDQEGGKVSRMPKEYASIPSNGKVGNSSDSDAAGTMGKLLA 204 L N+LK N+ N +PLF+SVD+EGG+VSRMPKE +PSN +G ++S+ + +GK+++ Sbjct: 106 LTNSLKSINSKNKIPLFISVDEEGGRVSRMPKELEKLPSNKIIGEINNSNLSYNIGKIIS 165 Query: 205 REVRAGGFNMNFAPVLDINSNPDNPVIGDRSFGSTASIVSKLGIAEMKGIESEGVVPVVK 264 +E+ GFNMNFAP+LDINSN NPVIGDRSFG+ ++V++LGI M+G+ ++PV+K Sbjct: 166 KELTCLGFNMNFAPILDINSNLQNPVIGDRSFGNNPNLVTRLGIKTMEGLREGNIIPVIK 225 Query: 265 HFPGHGDTSVDSHLELPVVNKTAPQLAKLEWLPFQAAFKEKADAVMVAHILFPHIDPDYP 324 HFPGHGDTSVDSH+ LP++N +L + E +PF+ A AD VM++HIL P ID YP Sbjct: 226 HFPGHGDTSVDSHVGLPLINHDMKRLKEFELIPFKEAINNNADVVMISHILLPKIDSSYP 285 Query: 325 ASLSRIIIGDQLRGDMGYQGVVITDDLTMGAIMKHFDLGAAAVETVDAGSDILLIAHGYE 384 A++S+III D LR D+ + GVVITDD+TM AI K+FD+ AA+++++AG+DI+LI HGY+ Sbjct: 286 ATMSKIIIKDVLRNDLKFNGVVITDDMTMSAITKNFDISNAAIKSINAGTDIILICHGYD 345 Query: 385 NEQLARKALLQSVRGGTLDESRINESVYRILALKQKYRLTDKPVPVPDLAELNNEIK 441 NE ++ ++V + E +INESVYRIL LK+KY++++ V D+ ++N+EIK Sbjct: 346 NEIYVINSIKEAVENNIITEDKINESVYRILKLKEKYKISNDTVDNIDVDKINSEIK 402 >A3I7T1.1 A3I7T1_9BACI Beta-hexosaminidase Length = 566 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/359 (50%), Positives = 256/359 (71%) Query: 79 VPSQEVDALTRKIAGMTLEEKIGQMLLVGIDGTTLEAEAKRVITDDKVGGIILYADNIKD 138 V ++ D + I MTL+EK+GQM+ G+ GT+L+ E K +I D K+GG+ILYA+N++ Sbjct: 196 VYTEITDEIAETINQMTLDEKLGQMMFAGVSGTSLQQETKSLIRDYKIGGLILYANNLET 255 Query: 139 LKGMVNLINALKKSNTTNPVPLFMSVDQEGGKVSRMPKEYASIPSNGKVGNSSDSDAAGT 198 + V+L+N L +N TN +PLF+ DQEGGKV R+P + P+N K+G + + Sbjct: 256 PQQTVSLMNDLMTANGTNRLPLFLGTDQEGGKVVRLPGPLKNFPTNQKIGQINQPQFSYE 315 Query: 199 MGKLLAREVRAGGFNMNFAPVLDINSNPDNPVIGDRSFGSTASIVSKLGIAEMKGIESEG 258 +GKLL +++A GFN++FAPV+D+NSNP+NP+IGDRSF + IVS+LGI M+G+ES+ Sbjct: 316 IGKLLGEQLKAFGFNLDFAPVMDVNSNPNNPIIGDRSFSNKPDIVSQLGIQTMQGLESQQ 375 Query: 259 VVPVVKHFPGHGDTSVDSHLELPVVNKTAPQLAKLEWLPFQAAFKEKADAVMVAHILFPH 318 V+PV+KHFPGHGDTSVDSHLELP V+K+ L KLE +PF+AA + D VMV HIL P Sbjct: 376 VIPVIKHFPGHGDTSVDSHLELPKVSKSLDDLNKLELIPFKAAIDKGVDVVMVGHILLPK 435 Query: 319 IDPDYPASLSRIIIGDQLRGDMGYQGVVITDDLTMGAIMKHFDLGAAAVETVDAGSDILL 378 ID +P+S+S+ II LR +G+ GVV+TDD+TM AI HF +G AAV++V AG+DI+L Sbjct: 436 IDQQFPSSMSKEIITGLLRNQLGFDGVVMTDDMTMKAITNHFSIGQAAVDSVKAGNDIIL 495 Query: 379 IAHGYENEQLARKALLQSVRGGTLDESRINESVYRILALKQKYRLTDKPVPVPDLAELN 437 IAH + N A AL +V+ G + E +IN+SV RI+ LK+KY+L + PV DL +LN Sbjct: 496 IAHEFANVTTAIDALKAAVKNGKISEQQINDSVRRIIQLKEKYQLVNHPVSAVDLKKLN 554 >A8MJC3.1 A8MJC3_ALKOO Glycoside hydrolase family 3 domain protein Length = 418 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/362 (51%), Positives = 256/362 (70%) Query: 79 VPSQEVDALTRKIAGMTLEEKIGQMLLVGIDGTTLEAEAKRVITDDKVGGIILYADNIKD 138 V + VD + KI M+LEEKIGQ+LLVGIDG + +I + +VGG+ILY N+K Sbjct: 49 VEEKPVDEIQLKINKMSLEEKIGQLLLVGIDGYDMNDPTADLIQNYRVGGVILYGRNVKG 108 Query: 139 LKGMVNLINALKKSNTTNPVPLFMSVDQEGGKVSRMPKEYASIPSNGKVGNSSDSDAAGT 198 K +++L NALK SNT N +PLF+SVD+EGG VSR PKE +P+ +G + D D A Sbjct: 109 TKQLLDLTNALKTSNTANNIPLFISVDEEGGAVSRSPKEVKKLPTARAIGKTEDVDLAYE 168 Query: 199 MGKLLAREVRAGGFNMNFAPVLDINSNPDNPVIGDRSFGSTASIVSKLGIAEMKGIESEG 258 +G LL V++ G+NMNFAPVLDI+SNP NPVI RSFG T IVSK+GIAEMKG+ SEG Sbjct: 169 VGNLLGAMVKSFGYNMNFAPVLDIDSNPANPVIEKRSFGKTPDIVSKMGIAEMKGMASEG 228 Query: 259 VVPVVKHFPGHGDTSVDSHLELPVVNKTAPQLAKLEWLPFQAAFKEKADAVMVAHILFPH 318 V+PVVKHFPGHGDTSVDSH+ LP+++ ++ E PF++A +E A+ VMVAHIL Sbjct: 229 VIPVVKHFPGHGDTSVDSHIGLPIIHHELERIMDFEAAPFKSAIEEGAEVVMVAHILLKK 288 Query: 319 IDPDYPASLSRIIIGDQLRGDMGYQGVVITDDLTMGAIMKHFDLGAAAVETVDAGSDILL 378 ID + PAS+S++II D LR ++G+ GVVITDD+TMGAI K++D+ AA V ++AG+DI+L Sbjct: 289 IDAEKPASMSKVIITDILRENLGFGGVVITDDMTMGAISKNYDMAAAVVSAINAGADIIL 348 Query: 379 IAHGYENEQLARKALLQSVRGGTLDESRINESVYRILALKQKYRLTDKPVPVPDLAELNN 438 + H YEN A + + + G + R++ESV+RIL+LK KY + + V D+ ++N+ Sbjct: 349 VGHQYENAIAAFNGIKKGIEEGRIKMDRLDESVHRILSLKNKYNIKNTLVESMDVQKIND 408 Query: 439 EI 440 I Sbjct: 409 RI 410 >B1HX00.1 B1HX00_LYSSC Hypothetical lipoprotein ybbD Length = 566 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/353 (51%), Positives = 255/353 (72%) Query: 85 DALTRKIAGMTLEEKIGQMLLVGIDGTTLEAEAKRVITDDKVGGIILYADNIKDLKGMVN 144 D + I MTL+EK+GQM+ G+ GT+L+ E +I D KVGG+ILYA+N++ + V+ Sbjct: 202 DDIAETINQMTLDEKLGQMMFAGVSGTSLQQETTSLIRDYKVGGLILYANNLETPQQTVS 261 Query: 145 LINALKKSNTTNPVPLFMSVDQEGGKVSRMPKEYASIPSNGKVGNSSDSDAAGTMGKLLA 204 L+N L +N TN +PLF+ DQEGGKV R+P + P+N K+G + + + +G+LL Sbjct: 262 LMNDLMAANGTNRLPLFLGTDQEGGKVVRLPGPLKNFPTNQKIGQINQAQFSYEIGQLLG 321 Query: 205 REVRAGGFNMNFAPVLDINSNPDNPVIGDRSFGSTASIVSKLGIAEMKGIESEGVVPVVK 264 +++A GFN++FAPV+D+NSNP+NP+IGDRSF + IVS+LGI M+G+ES+ V+PV+K Sbjct: 322 EQLKAFGFNLDFAPVMDVNSNPNNPIIGDRSFSNKPDIVSQLGIQTMQGLESQQVIPVIK 381 Query: 265 HFPGHGDTSVDSHLELPVVNKTAPQLAKLEWLPFQAAFKEKADAVMVAHILFPHIDPDYP 324 HFPGHGDTSVDSHLELP V+K+ L KLE +PF+AA + D VMV HIL P ID YP Sbjct: 382 HFPGHGDTSVDSHLELPKVSKSLDDLTKLELIPFKAAIDKGVDVVMVGHILLPKIDQQYP 441 Query: 325 ASLSRIIIGDQLRGDMGYQGVVITDDLTMGAIMKHFDLGAAAVETVDAGSDILLIAHGYE 384 +S+S+ II LR +G+ GVV+TDD+TM AI HF++G AAV++V AG+DI+LIAH + Sbjct: 442 SSMSKEIITGILRNQLGFDGVVMTDDMTMKAITNHFNIGQAAVDSVKAGNDIILIAHEFA 501 Query: 385 NEQLARKALLQSVRGGTLDESRINESVYRILALKQKYRLTDKPVPVPDLAELN 437 N A AL +V+ G + E +IN+SV RI+ LK+KY+L ++PV DL +LN Sbjct: 502 NVTAAIDALKAAVKNGEITEQQINDSVRRIIQLKEKYQLVNQPVSAVDLNKLN 554 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,322,086,578 Number of extensions: 96947955 Number of successful extensions: 185246 Number of sequences better than 1.0e-05: 2024 Number of HSP's gapped: 180322 Number of HSP's successfully gapped: 2025 Length of query: 449 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 310 Effective length of database: 1,751,175,118 Effective search space: 542864286580 Effective search space used: 542864286580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)